Wall clock time and date at job start Mon Mar 30 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46895 * 2 1 4 4 H 1.08994 * 109.47161 * 173.92544 * 3 2 1 5 5 C 1.50701 * 109.46976 * 53.92620 * 3 2 1 6 6 H 1.08001 * 119.99696 * 239.99762 * 5 3 2 7 7 C 1.37874 * 119.99952 * 59.72890 * 5 3 2 8 8 N 1.31514 * 119.99986 * 0.26433 * 7 5 3 9 9 Si 1.86805 * 119.99894 * 180.27685 * 7 5 3 10 10 H 1.48498 * 109.46933 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47184 * 119.99693 * 9 7 5 12 12 H 1.48502 * 109.46667 * 239.99686 * 9 7 5 13 13 S 1.81402 * 109.47130 * 293.92533 * 3 2 1 14 14 O 1.42106 * 108.57777 * 60.29207 * 13 3 2 15 15 O 1.42101 * 108.57574 * 191.31212 * 13 3 2 16 16 C 1.81398 * 101.92433 * 305.79884 * 13 3 2 17 17 C 1.50701 * 109.47076 * 175.57302 * 16 13 3 18 18 C 1.38236 * 120.00010 * 269.72462 * 17 16 13 19 19 C 1.38232 * 119.99691 * 179.76792 * 18 17 16 20 20 C 1.38234 * 120.00102 * 0.51023 * 19 18 17 21 21 C 1.38238 * 120.00038 * 359.74663 * 20 19 18 22 22 C 1.38232 * 119.99722 * 90.00685 * 17 16 13 23 23 H 1.09007 * 109.47014 * 186.25971 * 1 2 3 24 24 H 1.09003 * 109.46992 * 306.25504 * 1 2 3 25 25 H 1.08994 * 109.47683 * 66.25591 * 1 2 3 26 26 H 1.09001 * 109.47076 * 240.00479 * 2 1 3 27 27 H 1.08998 * 109.47300 * 120.00385 * 2 1 3 28 28 H 0.97003 * 120.00127 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47328 * 295.57761 * 16 13 3 30 30 H 1.09004 * 109.46806 * 55.57880 * 16 13 3 31 31 H 1.08001 * 119.99730 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.99752 * 180.23730 * 19 18 17 33 33 H 1.08001 * 119.99829 * 179.72809 * 20 19 18 34 34 H 1.07996 * 119.99666 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00235 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1245 1.4445 0.1087 5 6 1.4186 2.1950 1.1484 6 1 0.8122 3.0679 0.9569 7 6 1.6197 1.7657 2.4431 8 7 2.3580 0.7026 2.6762 9 14 0.8431 2.6939 3.8661 10 1 0.0660 3.8451 3.3408 11 1 -0.0622 1.7853 4.6145 12 1 1.9086 3.1893 4.7741 13 16 1.5876 2.2438 -1.5633 14 8 0.1715 2.2369 -1.6824 15 8 2.2857 3.4778 -1.6581 16 6 2.2761 1.0947 -2.7864 17 6 1.8976 1.5500 -4.1723 18 6 0.7285 1.0961 -4.7537 19 6 0.3790 1.5175 -6.0230 20 6 1.2037 2.3846 -6.7150 21 6 2.3755 2.8344 -6.1356 22 6 2.7224 2.4170 -4.8642 23 1 -0.3633 -1.0216 0.1121 24 1 -0.3633 0.6078 0.8287 25 1 -0.3634 0.4138 -0.9406 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.4992 0.4004 3.5871 29 1 3.3620 1.0741 -2.6947 30 1 1.8776 0.0955 -2.6108 31 1 0.0862 0.4155 -4.2146 32 1 -0.5363 1.1659 -6.4757 33 1 0.9327 2.7104 -7.7084 34 1 3.0200 3.5114 -6.6764 35 1 3.6378 2.7684 -4.4116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084241515.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:15 Heat of formation + Delta-G solvation = -56.855305 kcal Electronic energy + Delta-G solvation = -18737.991918 eV Core-core repulsion = 15828.023921 eV Total energy + Delta-G solvation = -2909.967996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.14783 -36.16006 -35.12959 -34.92333 -32.89486 -31.52078 -30.84318 -27.36756 -27.19690 -24.07650 -22.53341 -21.44257 -20.67043 -17.96751 -17.00440 -16.47810 -16.03297 -15.51606 -15.31463 -14.90459 -14.68235 -14.11343 -13.44000 -13.30506 -13.08698 -12.77574 -12.64694 -12.43017 -12.18843 -11.66612 -11.24904 -11.12908 -11.06210 -10.99857 -10.94072 -10.75010 -10.60081 -10.41663 -10.25359 -9.86856 -9.41733 -8.93116 -8.87268 -8.65000 -8.40365 -6.28698 -4.40394 0.80965 1.45325 1.53579 3.19324 3.27477 3.34667 3.80625 3.85295 4.21443 4.41812 4.66036 4.91314 4.97364 5.03815 5.07727 5.17106 5.47200 5.53913 5.66526 5.67964 6.02663 6.07868 6.09369 6.19682 6.29956 6.48271 6.53334 6.61789 6.83200 6.87722 6.92656 7.02590 7.44713 7.51011 7.58044 7.87434 8.57628 9.24955 10.77327 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038772 B = 0.005576 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.001367 B = 5020.095627 C = 5191.839268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C -0.365 4.365 4 H 0.091 0.909 5 C -0.514 4.514 6 H 0.071 0.929 7 C 0.080 3.920 8 N -0.876 5.876 9 Si 0.900 3.100 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.279 1.279 13 S 2.387 3.613 14 O -0.944 6.944 15 O -0.960 6.960 16 C -0.593 4.593 17 C -0.073 4.073 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.266 0.734 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.014 -2.091 -12.791 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.151 4.151 3 C -0.481 4.481 4 H 0.108 0.892 5 C -0.552 4.552 6 H 0.089 0.911 7 C -0.125 4.125 8 N -0.512 5.512 9 Si 0.727 3.273 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.205 1.205 13 S 2.573 3.427 14 O -0.941 6.941 15 O -0.957 6.957 16 C -0.716 4.716 17 C -0.074 4.074 18 C -0.123 4.123 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.130 4.130 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.127 0.873 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.385 -1.411 -12.865 12.948 hybrid contribution 0.233 -0.393 0.905 1.014 sum -0.152 -1.804 -11.960 12.096 Atomic orbital electron populations 1.22056 0.96073 0.99957 1.04075 1.21468 0.96122 0.95286 1.02231 1.27407 1.06352 1.03736 1.10597 0.89161 1.20331 1.33150 1.12432 0.89336 0.91094 1.24827 0.94353 0.94769 0.98573 1.69853 1.37162 1.23150 1.21060 0.86373 0.79312 0.80134 0.81504 1.19052 1.20426 1.20476 1.09497 0.76322 0.77532 0.79315 1.93439 1.27890 1.86704 1.86111 1.93451 1.75632 1.40157 1.86476 1.29682 1.13425 1.18835 1.09641 1.19113 0.95881 0.98495 0.93950 1.21181 0.95979 0.99835 0.95344 1.21134 0.99666 0.98173 0.94832 1.21177 0.94967 0.98047 0.99969 1.21124 0.97297 1.00106 0.95335 1.21199 0.99858 0.97110 0.94836 0.94871 0.90611 0.91835 0.95197 0.87307 0.92378 0.84847 0.84211 0.85235 0.85753 0.86025 0.85776 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.17 37.16 0.34 -3.08 16 2 C -0.11 -2.35 5.25 -26.73 -0.14 -2.49 16 3 C -0.37 -8.39 2.52 -27.88 -0.07 -8.46 16 4 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 5 C -0.51 -13.50 6.93 -34.44 -0.24 -13.74 16 6 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 7 C 0.08 2.09 5.23 -17.82 -0.09 2.00 16 8 N -0.88 -23.00 11.38 55.43 0.63 -22.37 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 S 2.39 50.58 4.10 -107.50 -0.44 50.14 16 14 O -0.94 -21.78 15.24 -57.83 -0.88 -22.66 16 15 O -0.96 -23.04 18.10 -57.83 -1.05 -24.09 16 16 C -0.59 -9.53 5.44 36.01 0.20 -9.34 16 17 C -0.07 -1.18 5.13 -104.62 -0.54 -1.72 16 18 C -0.10 -1.55 9.70 -39.58 -0.38 -1.94 16 19 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 20 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 21 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 22 C -0.11 -1.66 9.70 -39.58 -0.38 -2.05 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.75 6.75 -51.93 -0.35 1.40 16 25 H 0.06 1.28 5.62 -51.93 -0.29 0.98 16 26 H 0.03 0.51 5.93 -51.93 -0.31 0.20 16 27 H 0.11 2.53 6.25 -51.93 -0.32 2.20 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.13 1.83 8.09 -51.93 -0.42 1.41 16 30 H 0.14 1.96 6.31 -51.92 -0.33 1.63 16 31 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -31.21 300.44 -9.26 -40.47 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.52 Total: 5.05 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: -2.50 Total: -46.53 kcal Atomic # 7 Polarization: -23.00 SS G_CDS: 0.63 Total: -22.37 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.93 Total: -46.75 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.44 Total: 50.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.21 -9.26 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084241515.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.388 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds