Wall clock time and date at job start Mon Mar 30 2020 08:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47018 * 2 1 4 4 H 1.08999 * 109.46517 * 54.46974 * 3 2 1 5 5 C 1.50700 * 109.46950 * 174.46623 * 3 2 1 6 6 H 1.07997 * 119.99868 * 120.00082 * 5 3 2 7 7 C 1.37876 * 120.00155 * 299.99939 * 5 3 2 8 8 N 1.31511 * 120.00170 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99889 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46890 * 89.99904 * 9 7 5 11 11 H 1.48497 * 109.47076 * 209.99702 * 9 7 5 12 12 H 1.48497 * 109.47108 * 330.00140 * 9 7 5 13 13 S 1.81397 * 109.47056 * 294.46852 * 3 2 1 14 14 O 1.42096 * 110.54541 * 73.72026 * 13 3 2 15 15 O 1.42098 * 110.54387 * 296.96709 * 13 3 2 16 16 C 1.76205 * 104.44929 * 185.34761 * 13 3 2 17 17 C 1.38251 * 120.00178 * 110.91218 * 16 13 3 18 18 C 1.38216 * 119.99866 * 180.27821 * 17 16 13 19 19 C 1.38257 * 120.00105 * 359.74933 * 18 17 16 20 20 C 1.38217 * 119.99711 * 359.97438 * 19 18 17 21 21 C 1.38210 * 119.99572 * 290.66623 * 16 13 3 22 22 C 1.50702 * 120.00514 * 359.97438 * 21 16 13 23 23 H 1.09000 * 109.46727 * 185.54063 * 1 2 3 24 24 H 1.08997 * 109.47091 * 305.54461 * 1 2 3 25 25 H 1.09002 * 109.46692 * 65.53921 * 1 2 3 26 26 H 1.08999 * 109.47520 * 240.00407 * 2 1 3 27 27 H 1.08995 * 109.47419 * 119.99944 * 2 1 3 28 28 H 0.97005 * 120.00083 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.00254 * 0.04446 * 17 16 13 30 30 H 1.08001 * 119.99856 * 179.77023 * 18 17 16 31 31 H 1.07997 * 120.00271 * 180.02562 * 19 18 17 32 32 H 1.08004 * 119.99907 * 180.02562 * 20 19 18 33 33 H 1.08998 * 109.47378 * 264.35545 * 22 21 16 34 34 H 1.09003 * 109.47426 * 144.35226 * 22 21 16 35 35 H 1.09001 * 109.46741 * 24.35674 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9841 0.8363 5 6 3.5408 1.4448 0.1370 6 1 4.1529 1.8869 -0.6351 7 6 4.1325 0.8823 1.2481 8 7 5.4421 0.8847 1.3679 9 14 3.0738 0.1169 2.5834 10 1 2.8557 -1.3201 2.2791 11 1 3.7596 0.2468 3.8941 12 1 1.7645 0.8155 2.6383 13 16 1.5737 2.2488 -1.5566 14 8 0.1837 2.5435 -1.5687 15 8 2.1950 1.6020 -2.6588 16 6 2.3522 3.8279 -1.4844 17 6 3.4047 4.1192 -2.3321 18 6 4.0191 5.3558 -2.2714 19 6 3.5776 6.3034 -1.3666 20 6 2.5216 6.0141 -0.5230 21 6 1.9072 4.7770 -0.5837 22 6 0.7558 4.4617 0.3362 23 1 -0.3633 -1.0229 0.0992 24 1 -0.3633 0.5974 0.8361 25 1 -0.3633 0.4255 -0.9355 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.8584 0.4886 2.1495 29 1 3.7494 3.3791 -3.0392 30 1 4.8437 5.5820 -2.9311 31 1 4.0573 7.2698 -1.3194 32 1 2.1765 6.7544 0.1836 33 1 -0.1708 4.8339 -0.1007 34 1 0.9203 4.9405 1.3015 35 1 0.6853 3.3827 0.4731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084253321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:02 Heat of formation + Delta-G solvation = -48.979239 kcal Electronic energy + Delta-G solvation = -19404.946962 eV Core-core repulsion = 16495.320497 eV Total energy + Delta-G solvation = -2909.626464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.92882 -36.39071 -35.42132 -35.09075 -32.55676 -32.22252 -30.83138 -28.27804 -26.68997 -23.22021 -22.86958 -21.50007 -21.23489 -18.27500 -17.32318 -17.10990 -15.87810 -15.45931 -15.21503 -14.68627 -14.11714 -14.05259 -13.79189 -13.38446 -12.93440 -12.85521 -12.64049 -12.41377 -12.10695 -11.83486 -11.75826 -11.64929 -11.22123 -11.09515 -11.03413 -10.88627 -10.87178 -10.31494 -10.02068 -9.96463 -9.65035 -9.17190 -8.83635 -8.78854 -8.39956 -6.33998 -4.41900 0.97624 1.36868 1.68709 3.09680 3.20378 3.23135 3.68032 3.87117 4.17799 4.61043 4.90712 4.93878 5.10981 5.13923 5.29574 5.43528 5.54932 5.61891 5.69336 5.70258 5.86999 5.89228 5.99381 6.15164 6.19468 6.25861 6.39729 6.44020 6.53039 6.60835 6.66571 6.69258 6.82697 7.17805 7.24612 8.00902 8.60561 9.22428 10.76511 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.009865 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.140575 B = 2837.621818 C = 3383.487938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.125 4.125 3 C -0.417 4.417 4 H 0.097 0.903 5 C -0.520 4.520 6 H 0.094 0.906 7 C 0.092 3.908 8 N -0.878 5.878 9 Si 0.881 3.119 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.260 1.260 13 S 2.482 3.518 14 O -0.967 6.967 15 O -0.954 6.954 16 C -0.625 4.625 17 C -0.014 4.014 18 C -0.150 4.150 19 C -0.074 4.074 20 C -0.147 4.147 21 C 0.014 3.986 22 C -0.140 4.140 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.270 0.730 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 6.707 -1.469 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.164 4.164 3 C -0.531 4.531 4 H 0.114 0.886 5 C -0.558 4.558 6 H 0.111 0.889 7 C -0.115 4.115 8 N -0.513 5.513 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.219 1.219 12 H -0.185 1.185 13 S 2.667 3.333 14 O -0.964 6.964 15 O -0.951 6.951 16 C -0.711 4.711 17 C -0.033 4.033 18 C -0.169 4.169 19 C -0.092 4.092 20 C -0.166 4.166 21 C 0.014 3.986 22 C -0.197 4.197 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.756 6.397 -2.073 9.533 hybrid contribution 0.308 0.003 1.435 1.468 sum -6.449 6.401 -0.638 9.108 Atomic orbital electron populations 1.22241 0.96523 1.02255 1.02931 1.21850 0.94070 0.96358 1.04123 1.27954 1.07690 1.03201 1.14269 0.88557 1.20175 0.84795 1.41980 1.08817 0.88857 1.24854 0.94769 0.94415 0.97437 1.69850 1.08992 1.43174 1.29328 0.86903 0.81013 0.80204 0.80893 1.19852 1.21879 1.18458 1.05988 0.74009 0.74621 0.78676 1.93482 1.30583 1.84279 1.88023 1.93445 1.77287 1.74338 1.50065 1.30366 1.11924 1.22098 1.06716 1.20943 0.90993 0.96485 0.94835 1.21173 1.00970 0.94252 1.00458 1.21276 0.95147 0.98728 0.94068 1.21012 0.97899 0.96761 1.00923 1.19476 0.94044 0.92805 0.92320 1.21276 0.96475 1.03404 0.98510 0.92133 0.92000 0.91859 0.90249 0.90772 0.91946 0.84159 0.85656 0.85949 0.85750 0.89255 0.90437 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 9.46 37.16 0.35 -2.81 16 2 C -0.13 -2.59 4.89 -26.73 -0.13 -2.72 16 3 C -0.42 -9.24 1.59 -27.88 -0.04 -9.28 16 4 H 0.10 2.00 5.17 -51.92 -0.27 1.73 16 5 C -0.52 -13.52 8.71 -34.44 -0.30 -13.82 16 6 H 0.09 2.60 7.68 -52.49 -0.40 2.20 16 7 C 0.09 2.46 5.45 -17.82 -0.10 2.36 16 8 N -0.88 -25.09 13.96 55.43 0.77 -24.31 16 9 Si 0.88 20.21 24.41 -169.99 -4.15 16.06 16 10 H -0.27 -6.05 6.83 56.52 0.39 -5.66 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.26 -5.54 6.53 56.52 0.37 -5.17 16 13 S 2.48 53.04 3.46 -107.50 -0.37 52.67 16 14 O -0.97 -20.30 14.24 -57.54 -0.82 -21.12 16 15 O -0.95 -22.52 16.74 -57.54 -0.96 -23.48 16 16 C -0.62 -12.58 4.86 -39.59 -0.19 -12.77 16 17 C -0.01 -0.26 9.50 -39.58 -0.38 -0.64 16 18 C -0.15 -2.40 10.05 -39.58 -0.40 -2.79 16 19 C -0.07 -1.09 10.05 -39.58 -0.40 -1.48 16 20 C -0.15 -2.28 9.72 -39.58 -0.38 -2.66 16 21 C 0.01 0.26 5.86 -104.62 -0.61 -0.35 16 22 C -0.14 -2.23 8.79 36.01 0.32 -1.91 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 1.09 6.25 -51.93 -0.32 0.77 16 26 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.07 1.57 3.21 -51.93 -0.17 1.40 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.14 2.63 7.23 -52.48 -0.38 2.25 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.07 1.21 3.69 -51.93 -0.19 1.02 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -30.99 288.61 -7.75 -38.74 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.30 Total: 5.98 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: -2.27 Total: -48.88 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.77 Total: -24.31 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.78 Total: -44.60 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.15 Total: 16.06 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.37 Total: 52.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.99 -7.75 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.241 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds