Wall clock time and date at job start Mon Mar 30 2020 08:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47018 * 2 1 4 4 H 1.08999 * 109.46517 * 54.46974 * 3 2 1 5 5 C 1.50700 * 109.46950 * 174.46623 * 3 2 1 6 6 H 1.07997 * 119.99868 * 120.00082 * 5 3 2 7 7 C 1.37876 * 120.00155 * 299.99939 * 5 3 2 8 8 N 1.31511 * 120.00170 * 180.02562 * 7 5 3 9 9 Si 1.86805 * 119.99889 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46890 * 89.99904 * 9 7 5 11 11 H 1.48497 * 109.47076 * 209.99702 * 9 7 5 12 12 H 1.48497 * 109.47108 * 330.00140 * 9 7 5 13 13 S 1.81397 * 109.47056 * 294.46852 * 3 2 1 14 14 O 1.42096 * 110.54541 * 73.72026 * 13 3 2 15 15 O 1.42098 * 110.54387 * 296.96709 * 13 3 2 16 16 C 1.76205 * 104.44929 * 185.34761 * 13 3 2 17 17 C 1.38251 * 120.00178 * 110.91218 * 16 13 3 18 18 C 1.38216 * 119.99866 * 180.27821 * 17 16 13 19 19 C 1.38257 * 120.00105 * 359.74933 * 18 17 16 20 20 C 1.38217 * 119.99711 * 359.97438 * 19 18 17 21 21 C 1.38210 * 119.99572 * 290.66623 * 16 13 3 22 22 C 1.50702 * 120.00514 * 359.97438 * 21 16 13 23 23 H 1.09000 * 109.46727 * 185.54063 * 1 2 3 24 24 H 1.08997 * 109.47091 * 305.54461 * 1 2 3 25 25 H 1.09002 * 109.46692 * 65.53921 * 1 2 3 26 26 H 1.08999 * 109.47520 * 240.00407 * 2 1 3 27 27 H 1.08995 * 109.47419 * 119.99944 * 2 1 3 28 28 H 0.97005 * 120.00083 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.00254 * 0.04446 * 17 16 13 30 30 H 1.08001 * 119.99856 * 179.77023 * 18 17 16 31 31 H 1.07997 * 120.00271 * 180.02562 * 19 18 17 32 32 H 1.08004 * 119.99907 * 180.02562 * 20 19 18 33 33 H 1.08998 * 109.47378 * 264.35545 * 22 21 16 34 34 H 1.09003 * 109.47426 * 144.35226 * 22 21 16 35 35 H 1.09001 * 109.46741 * 24.35674 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5980 1.9841 0.8363 5 6 3.5408 1.4448 0.1370 6 1 4.1529 1.8869 -0.6351 7 6 4.1325 0.8823 1.2481 8 7 5.4421 0.8847 1.3679 9 14 3.0738 0.1169 2.5834 10 1 2.8557 -1.3201 2.2791 11 1 3.7596 0.2468 3.8941 12 1 1.7645 0.8155 2.6383 13 16 1.5737 2.2488 -1.5566 14 8 0.1837 2.5435 -1.5687 15 8 2.1950 1.6020 -2.6588 16 6 2.3522 3.8279 -1.4844 17 6 3.4047 4.1192 -2.3321 18 6 4.0191 5.3558 -2.2714 19 6 3.5776 6.3034 -1.3666 20 6 2.5216 6.0141 -0.5230 21 6 1.9072 4.7770 -0.5837 22 6 0.7558 4.4617 0.3362 23 1 -0.3633 -1.0229 0.0992 24 1 -0.3633 0.5974 0.8361 25 1 -0.3633 0.4255 -0.9355 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.8584 0.4886 2.1495 29 1 3.7494 3.3791 -3.0392 30 1 4.8437 5.5820 -2.9311 31 1 4.0573 7.2698 -1.3194 32 1 2.1765 6.7544 0.1836 33 1 -0.1708 4.8339 -0.1007 34 1 0.9203 4.9405 1.3015 35 1 0.6853 3.3827 0.4731 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084253321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:02 Heat of formation + Delta-G solvation = -69.897282 kcal Electronic energy + Delta-G solvation = -19405.854036 eV Core-core repulsion = 16495.320497 eV Total energy + Delta-G solvation = -2910.533539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20499 -38.09769 -37.13948 -36.83212 -34.14817 -33.82111 -32.14961 -29.98561 -27.92594 -25.07407 -24.23335 -23.03032 -22.57788 -19.87778 -19.22250 -18.66124 -17.55272 -16.96239 -16.62438 -16.39254 -15.63656 -15.53251 -15.27638 -14.77452 -14.56481 -14.29751 -14.16224 -13.99801 -13.56581 -13.26040 -13.11410 -13.06003 -12.97666 -12.75058 -12.70876 -12.47812 -12.13596 -11.97834 -11.73597 -11.52394 -11.43850 -10.96745 -10.71584 -10.17014 -9.68109 -8.37894 -6.50250 -0.65182 0.00483 0.39593 1.29716 1.34991 1.45314 2.06799 2.27353 2.54797 2.89493 3.04157 3.42349 3.79224 3.86668 3.94528 4.05527 4.08784 4.17325 4.30683 4.46451 4.49244 4.64277 4.75507 4.77954 4.82601 4.95483 4.97069 5.02555 5.17978 5.26132 5.28966 5.36607 5.41355 5.43737 5.95032 6.00930 6.53394 7.17027 8.76247 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.009865 C = 0.008273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.140575 B = 2837.621818 C = 3383.487938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.134 4.134 3 C -0.424 4.424 4 H 0.117 0.883 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.038 3.962 8 N -0.929 5.929 9 Si 0.930 3.070 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.229 1.229 13 S 2.492 3.508 14 O -0.965 6.965 15 O -0.989 6.989 16 C -0.654 4.654 17 C -0.048 4.048 18 C -0.155 4.155 19 C -0.066 4.066 20 C -0.147 4.147 21 C -0.004 4.004 22 C -0.147 4.147 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.272 0.728 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 8.373 0.045 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.172 4.172 3 C -0.538 4.538 4 H 0.134 0.866 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.163 4.163 8 N -0.567 5.567 9 Si 0.755 3.245 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.152 1.152 13 S 2.679 3.321 14 O -0.962 6.962 15 O -0.987 6.987 16 C -0.743 4.743 17 C -0.067 4.067 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.166 4.166 21 C -0.005 4.005 22 C -0.203 4.203 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.171 0.829 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.559 8.034 -0.577 11.753 hybrid contribution 0.920 -0.375 0.868 1.319 sum -7.639 7.658 0.291 10.821 Atomic orbital electron populations 1.22268 0.93588 1.04647 1.03425 1.21888 0.96781 0.94856 1.03712 1.27984 1.05090 1.04923 1.15761 0.86590 1.20249 0.86864 1.40954 1.07692 0.92562 1.25677 0.95814 0.94990 0.99850 1.69985 1.11039 1.45195 1.30458 0.86084 0.80641 0.80187 0.77573 1.18692 1.22105 1.15200 1.05349 0.73898 0.75034 0.77772 1.93466 1.30448 1.84436 1.87863 1.93394 1.78004 1.75831 1.51459 1.30120 1.13420 1.21731 1.09046 1.21073 0.92106 0.98020 0.95512 1.21572 1.01293 0.93273 1.01249 1.21853 0.94332 0.99943 0.92247 1.21547 0.97353 0.96420 1.01263 1.19899 0.94957 0.93495 0.92165 1.21412 0.96401 1.02772 0.99734 0.89103 0.90449 0.92258 0.91074 0.90952 0.91865 0.85796 0.82910 0.81447 0.81790 0.87829 0.87465 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.87 9.46 71.98 0.68 -5.19 16 2 C -0.13 -5.40 4.89 30.60 0.15 -5.25 16 3 C -0.42 -18.72 1.59 29.85 0.05 -18.67 16 4 H 0.12 4.65 5.17 -2.39 -0.01 4.63 16 5 C -0.52 -27.82 8.71 25.60 0.22 -27.59 16 6 H 0.06 3.35 7.68 -2.91 -0.02 3.33 16 7 C 0.04 2.08 5.45 84.65 0.46 2.54 16 8 N -0.93 -54.81 13.96 21.45 0.30 -54.51 16 9 Si 0.93 40.63 24.41 68.60 1.67 42.30 16 10 H -0.26 -10.88 6.83 99.48 0.68 -10.20 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.23 -8.78 6.53 99.48 0.65 -8.13 16 13 S 2.49 108.43 3.46 -56.49 -0.20 108.23 16 14 O -0.96 -40.17 14.24 -127.65 -1.82 -41.99 16 15 O -0.99 -49.11 16.74 -127.65 -2.14 -51.25 16 16 C -0.65 -26.62 4.86 22.27 0.11 -26.51 16 17 C -0.05 -1.89 9.50 22.27 0.21 -1.68 16 18 C -0.16 -4.79 10.05 22.27 0.22 -4.57 16 19 C -0.07 -1.71 10.05 22.27 0.22 -1.49 16 20 C -0.15 -4.05 9.72 22.27 0.22 -3.84 16 21 C 0.00 -0.14 5.86 -19.87 -0.12 -0.26 16 22 C -0.15 -4.28 8.79 71.24 0.63 -3.66 16 23 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.06 1.95 6.25 -2.39 -0.01 1.93 16 26 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.07 2.93 3.21 -2.39 -0.01 2.92 16 28 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 29 H 0.12 5.06 7.23 -2.91 -0.02 5.03 16 30 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.11 2.41 8.12 -2.39 -0.02 2.39 16 35 H 0.06 1.79 3.69 -2.39 -0.01 1.78 16 Total: -1.00 -69.85 288.61 1.89 -67.96 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.01 Total: 25.41 kcal Atomic # 6 Polarization: -99.22 SS G_CDS: 3.06 Total: -96.16 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.30 Total: -54.51 kcal Atomic # 8 Polarization: -89.28 SS G_CDS: -3.96 Total: -93.24 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.67 Total: 42.30 kcal Atomic # 16 Polarization: 108.43 SS G_CDS: -0.20 Total: 108.23 kcal Total: -69.85 1.89 -67.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.936 kcal (2) G-P(sol) polarization free energy of solvation -69.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds