Wall clock time and date at job start Mon Mar 30 2020 08:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46849 * 2 1 4 4 S 1.81401 * 109.47277 * 240.00330 * 2 1 3 5 5 O 1.42098 * 108.57439 * 294.47934 * 4 2 1 6 6 O 1.42098 * 108.58091 * 65.51172 * 4 2 1 7 7 C 1.81401 * 101.91955 * 179.97438 * 4 2 1 8 8 H 1.09003 * 109.47256 * 301.41604 * 7 4 2 9 9 C 1.50701 * 109.47231 * 61.41237 * 7 4 2 10 10 H 1.08003 * 120.00256 * 34.17483 * 9 7 4 11 11 C 1.37880 * 120.00185 * 214.17367 * 9 7 4 12 12 N 1.31511 * 120.00131 * 186.68636 * 11 9 7 13 13 Si 1.86803 * 119.99874 * 6.69319 * 11 9 7 14 14 H 1.48504 * 109.46834 * 84.84248 * 13 11 9 15 15 H 1.48498 * 109.46805 * 204.83826 * 13 11 9 16 16 H 1.48495 * 109.46932 * 324.84409 * 13 11 9 17 17 C 1.50697 * 109.47275 * 181.40936 * 7 4 2 18 18 C 1.38237 * 120.00061 * 297.78389 * 17 7 4 19 19 C 1.38236 * 119.99727 * 179.80717 * 18 17 7 20 20 C 1.38232 * 120.00193 * 0.39652 * 19 18 17 21 21 C 1.38240 * 119.99960 * 359.85771 * 20 19 18 22 22 C 1.38233 * 120.00134 * 359.95244 * 21 20 19 23 23 H 1.09002 * 109.47641 * 60.00263 * 1 2 3 24 24 H 1.09005 * 109.46670 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47556 * 299.99909 * 1 2 3 26 26 H 1.08990 * 109.47218 * 119.99782 * 2 1 3 27 27 H 1.09002 * 109.47480 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47155 * 299.99881 * 3 2 1 29 29 H 1.09001 * 109.46967 * 59.99730 * 3 2 1 30 30 H 0.96998 * 120.00591 * 180.02562 * 12 11 9 31 31 H 1.07997 * 120.00037 * 359.97438 * 18 17 7 32 32 H 1.08000 * 120.00248 * 180.23167 * 19 18 17 33 33 H 1.08002 * 120.00035 * 179.83832 * 20 19 18 34 34 H 1.08002 * 120.00093 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.99847 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1347 -0.8550 -1.4812 5 8 1.7594 -2.2231 -1.3990 6 8 1.7593 -0.0999 -2.6249 7 6 3.9330 -0.7351 -1.2751 8 1 4.2224 0.3139 -1.2125 9 6 4.3421 -1.4453 -0.0104 10 1 3.8101 -2.3294 0.3088 11 6 5.3956 -0.9665 0.7392 12 7 5.8375 -1.6561 1.7681 13 14 6.1952 0.6618 0.2933 14 1 5.4306 1.7745 0.9119 15 1 7.5922 0.6814 0.7965 16 1 6.1982 0.8239 -1.1828 17 6 4.6176 -1.3757 -2.4548 18 6 4.4384 -2.7224 -2.7105 19 6 5.0634 -3.3091 -3.7950 20 6 5.8740 -2.5510 -4.6191 21 6 6.0574 -1.2054 -4.3603 22 6 5.4294 -0.6178 -3.2781 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 0.8899 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 6.5784 -1.3191 2.2957 31 1 3.8081 -3.3155 -2.0646 32 1 4.9204 -4.3603 -3.9971 33 1 6.3643 -3.0099 -5.4649 34 1 6.6910 -0.6132 -5.0039 35 1 5.5723 0.4334 -3.0762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084253612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:30 Heat of formation + Delta-G solvation = -79.316939 kcal Electronic energy + Delta-G solvation = -19266.325752 eV Core-core repulsion = 16355.383746 eV Total energy + Delta-G solvation = -2910.942006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12500 -37.83674 -36.86449 -36.14130 -35.48500 -33.53592 -31.73877 -29.66560 -28.16854 -25.26240 -23.51583 -23.46588 -22.13095 -19.64194 -19.13935 -18.03812 -17.78079 -17.03819 -16.67419 -16.36184 -16.00825 -15.37065 -15.23183 -14.73543 -14.31560 -14.20643 -14.10895 -13.83743 -13.69900 -13.46505 -13.17628 -13.00929 -12.86313 -12.80708 -12.31598 -12.29345 -12.21809 -12.09859 -11.90362 -11.73257 -11.39179 -10.92800 -10.75723 -9.76941 -9.45933 -8.45567 -6.53992 -0.73407 0.54284 0.57611 1.30910 1.36442 1.43943 2.01908 2.26589 2.76378 2.89043 3.05317 3.25054 3.74250 3.78434 3.95787 4.00600 4.23060 4.30759 4.32976 4.36311 4.61660 4.65763 4.71054 4.73041 4.78464 4.97287 4.98866 5.09355 5.17733 5.22320 5.27561 5.60363 5.65240 5.75318 5.96089 6.18681 6.50545 7.09226 8.66520 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.011562 C = 0.008232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.440661 B = 2421.138528 C = 3400.673574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.555 4.555 3 C -0.147 4.147 4 S 2.372 3.628 5 O -0.988 6.988 6 O -0.990 6.990 7 C -0.383 4.383 8 H 0.117 0.883 9 C -0.499 4.499 10 H 0.061 0.939 11 C 0.052 3.948 12 N -0.910 5.910 13 Si 0.899 3.101 14 H -0.237 1.237 15 H -0.287 1.287 16 H -0.228 1.228 17 C -0.077 4.077 18 C -0.142 4.142 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.276 0.724 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 6.346 -6.583 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.668 4.668 3 C -0.204 4.204 4 S 2.566 3.434 5 O -0.985 6.985 6 O -0.986 6.986 7 C -0.494 4.494 8 H 0.134 0.866 9 C -0.539 4.539 10 H 0.079 0.921 11 C -0.153 4.153 12 N -0.546 5.546 13 Si 0.720 3.280 14 H -0.161 1.161 15 H -0.212 1.212 16 H -0.151 1.151 17 C -0.080 4.080 18 C -0.161 4.161 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.157 4.157 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.161 0.839 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.791 5.943 -7.155 9.711 hybrid contribution 0.939 0.366 1.115 1.503 sum -1.852 6.309 -6.040 8.928 Atomic orbital electron populations 1.21759 0.89300 1.03689 1.05606 1.29633 1.06807 1.09965 1.20348 1.21797 1.01679 0.91309 1.05660 1.10019 0.80168 0.75339 0.77857 1.93387 1.82871 1.34538 1.87677 1.93393 1.83078 1.73250 1.48919 1.26831 1.17868 1.05144 0.99604 0.86564 1.20216 1.18348 1.12864 1.02493 0.92053 1.25714 0.95619 1.00337 0.93648 1.69973 1.26260 1.39447 1.18918 0.86444 0.78723 0.80843 0.81974 1.16079 1.21249 1.15147 1.19851 0.99508 0.94722 0.93873 1.21357 1.01287 0.94844 0.98572 1.21442 0.97429 1.01087 0.94629 1.21505 0.98643 0.94167 1.00286 1.21496 0.99589 0.95871 0.96993 1.21401 0.98091 1.00434 0.95820 0.90821 0.91768 0.87417 0.83932 0.91902 0.90080 0.87953 0.91440 0.87134 0.83975 0.82434 0.82661 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.20 71.98 0.66 -3.40 16 2 C -0.56 -18.87 3.02 30.59 0.09 -18.78 16 3 C -0.15 -4.21 8.94 71.98 0.64 -3.57 16 4 S 2.37 101.79 3.60 -56.49 -0.20 101.59 16 5 O -0.99 -48.53 16.37 -127.37 -2.08 -50.61 16 6 O -0.99 -44.29 17.91 -127.37 -2.28 -46.57 16 7 C -0.38 -17.04 1.57 29.10 0.05 -16.99 16 8 H 0.12 4.65 3.67 -2.39 -0.01 4.65 16 9 C -0.50 -25.50 7.61 25.60 0.19 -25.31 16 10 H 0.06 3.54 7.93 -2.91 -0.02 3.51 16 11 C 0.05 2.66 5.47 84.66 0.46 3.13 16 12 N -0.91 -50.91 13.96 21.45 0.30 -50.61 16 13 Si 0.90 37.14 26.47 68.60 1.82 38.96 16 14 H -0.24 -8.74 7.11 99.48 0.71 -8.04 16 15 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.23 -8.62 4.98 99.48 0.50 -8.13 16 17 C -0.08 -3.39 4.77 -19.86 -0.09 -3.49 16 18 C -0.14 -6.25 8.67 22.27 0.19 -6.06 16 19 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 20 C -0.13 -3.82 10.05 22.27 0.22 -3.59 16 21 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 22 C -0.14 -5.25 9.11 22.27 0.20 -5.05 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.14 5.03 7.77 -2.40 -0.02 5.01 16 27 H 0.06 1.89 5.94 -2.39 -0.01 1.88 16 28 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 29 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.11 5.31 6.92 -2.91 -0.02 5.29 16 32 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.13 4.45 6.81 -2.91 -0.02 4.43 16 Total: -1.00 -67.58 298.12 1.49 -66.09 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.87 Total: 32.12 kcal Atomic # 6 Polarization: -94.03 SS G_CDS: 3.07 Total: -90.96 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.30 Total: -50.61 kcal Atomic # 8 Polarization: -92.82 SS G_CDS: -4.37 Total: -97.18 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.82 Total: 38.96 kcal Atomic # 16 Polarization: 101.79 SS G_CDS: -0.20 Total: 101.59 kcal Total: -67.58 1.49 -66.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.225 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds