Wall clock time and date at job start Mon Mar 30 2020 08:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47456 * 2 1 4 4 S 1.81405 * 109.46801 * 239.99843 * 2 1 3 5 5 O 1.42102 * 108.57401 * 59.49228 * 4 2 1 6 6 O 1.42094 * 108.57664 * 190.51332 * 4 2 1 7 7 C 1.81396 * 101.92173 * 305.00395 * 4 2 1 8 8 H 1.08995 * 109.47488 * 64.99761 * 7 4 2 9 9 C 1.50696 * 109.47271 * 304.99664 * 7 4 2 10 10 H 1.08004 * 120.00088 * 325.03953 * 9 7 4 11 11 C 1.37880 * 120.00304 * 145.03638 * 9 7 4 12 12 N 1.31518 * 119.99735 * 5.20462 * 11 9 7 13 13 Si 1.86803 * 120.00304 * 185.21018 * 11 9 7 14 14 H 1.48490 * 109.47344 * 89.99628 * 13 11 9 15 15 H 1.48500 * 109.46766 * 209.99758 * 13 11 9 16 16 H 1.48500 * 109.46616 * 329.99748 * 13 11 9 17 17 C 1.50705 * 109.47138 * 185.00005 * 7 4 2 18 18 C 1.38234 * 119.99573 * 63.21745 * 17 7 4 19 19 C 1.38236 * 119.99475 * 179.79253 * 18 17 7 20 20 C 1.38242 * 120.00276 * 0.43990 * 19 18 17 21 21 C 1.38233 * 119.99525 * 359.81687 * 20 19 18 22 22 C 1.38231 * 120.00383 * 359.97376 * 21 20 19 23 23 H 1.09000 * 109.47086 * 59.99253 * 1 2 3 24 24 H 1.08996 * 109.47519 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46780 * 299.99710 * 1 2 3 26 26 H 1.09000 * 109.47086 * 120.00747 * 2 1 3 27 27 H 1.09011 * 109.46889 * 60.00357 * 3 2 1 28 28 H 1.08997 * 109.47478 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47126 * 300.00166 * 3 2 1 30 30 H 0.96996 * 120.00180 * 180.02562 * 12 11 9 31 31 H 1.08000 * 120.00796 * 0.02562 * 18 17 7 32 32 H 1.08000 * 120.00266 * 180.27677 * 19 18 17 33 33 H 1.07991 * 120.00344 * 179.83414 * 20 19 18 34 34 H 1.08004 * 119.99682 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00340 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8552 -1.4812 5 8 1.6407 -0.1775 -2.6284 6 8 3.5340 -1.0608 -1.3457 7 6 1.2996 -2.4605 -1.3541 8 1 0.2229 -2.3185 -1.4470 9 6 1.6104 -3.0840 -0.0178 10 1 2.5816 -2.9403 0.4324 11 6 0.6550 -3.8379 0.6302 12 7 -0.4900 -4.0985 0.0379 13 14 0.9868 -4.4891 2.3493 14 1 0.5262 -3.4958 3.3524 15 1 0.2544 -5.7661 2.5448 16 1 2.4436 -4.7231 2.5173 17 6 1.7837 -3.3673 -2.4562 18 6 3.1118 -3.7475 -2.5050 19 6 3.5549 -4.5827 -3.5135 20 6 2.6719 -5.0302 -4.4784 21 6 1.3449 -4.6456 -4.4325 22 6 0.9008 -3.8140 -3.4216 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 -1.1623 -4.6286 0.4939 31 1 3.8025 -3.3952 -1.7531 32 1 4.5916 -4.8835 -3.5491 33 1 3.0186 -5.6805 -5.2677 34 1 0.6549 -4.9956 -5.1861 35 1 -0.1360 -3.5138 -3.3855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084253614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:33 Heat of formation + Delta-G solvation = -81.644729 kcal Electronic energy + Delta-G solvation = -19207.198800 eV Core-core repulsion = 16296.155854 eV Total energy + Delta-G solvation = -2911.042946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.98702 -37.72782 -36.75816 -36.15063 -35.40086 -33.07744 -31.63615 -29.34389 -28.03719 -25.55872 -23.38135 -23.32183 -22.09313 -19.57660 -18.64285 -17.95831 -17.63448 -17.00188 -16.47608 -16.29801 -15.91872 -15.34776 -15.24390 -14.37299 -14.22181 -14.08622 -13.95859 -13.73053 -13.51722 -13.27689 -13.12577 -12.92044 -12.79626 -12.76850 -12.40449 -12.30109 -12.11372 -12.01297 -11.85230 -11.60019 -11.29341 -10.90162 -10.56915 -9.68798 -9.33974 -8.33653 -6.43856 -0.59111 0.63555 0.69270 1.43345 1.46757 1.55227 2.14772 2.34564 2.88765 3.02071 3.14872 3.37158 3.83333 3.91487 4.15163 4.16220 4.30168 4.35740 4.43430 4.64229 4.69063 4.74125 4.82403 4.85976 4.91512 5.00518 5.12459 5.18237 5.30069 5.35643 5.53394 5.65201 5.70511 5.78586 5.95388 6.28038 6.62066 7.18617 8.74526 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.011561 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.591634 B = 2421.436551 C = 3678.026022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.547 4.547 3 C -0.146 4.146 4 S 2.349 3.651 5 O -1.007 7.007 6 O -0.992 6.992 7 C -0.345 4.345 8 H 0.115 0.885 9 C -0.509 4.509 10 H 0.077 0.923 11 C 0.048 3.952 12 N -0.879 5.879 13 Si 0.950 3.050 14 H -0.258 1.258 15 H -0.284 1.284 16 H -0.268 1.268 17 C -0.064 4.064 18 C -0.142 4.142 19 C -0.131 4.131 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.130 4.130 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.147 0.853 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.274 0.726 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 2.321 -0.641 2.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.659 4.659 3 C -0.204 4.204 4 S 2.546 3.454 5 O -1.004 7.004 6 O -0.989 6.989 7 C -0.457 4.457 8 H 0.133 0.867 9 C -0.550 4.550 10 H 0.095 0.905 11 C -0.159 4.159 12 N -0.514 5.514 13 Si 0.774 3.226 14 H -0.183 1.183 15 H -0.209 1.209 16 H -0.192 1.192 17 C -0.067 4.067 18 C -0.161 4.161 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.145 4.145 22 C -0.149 4.149 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.165 0.835 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.161 0.839 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.499 2.688 -1.332 3.354 hybrid contribution -0.504 -0.732 1.412 1.669 sum 0.995 1.957 0.081 2.197 Atomic orbital electron populations 1.21680 0.89680 1.04156 1.04295 1.29521 1.07351 1.08559 1.20490 1.21761 1.01565 0.91827 1.05233 1.10901 0.76645 0.80097 0.77717 1.93361 1.82381 1.75150 1.49460 1.93353 1.31872 1.86244 1.87459 1.26444 1.09188 1.10328 0.99762 0.86745 1.20687 1.00718 1.34402 0.99187 0.90532 1.25603 0.94336 0.94767 1.01172 1.70001 1.06884 1.36003 1.38553 0.85652 0.78870 0.78314 0.79774 1.18295 1.20917 1.19234 1.19901 0.94007 0.99210 0.93573 1.21387 0.95658 0.99413 0.99632 1.21428 1.00993 0.97668 0.94783 1.21434 0.93235 1.00932 0.99622 1.21430 0.96960 0.97782 0.98356 1.21240 0.99369 0.99316 0.94976 0.91638 0.91152 0.88682 0.83535 0.87593 0.91580 0.91510 0.91670 0.86411 0.83851 0.82768 0.83514 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.91 71.98 0.64 -3.94 16 2 C -0.55 -19.22 2.86 30.59 0.09 -19.13 16 3 C -0.15 -4.23 9.19 71.98 0.66 -3.57 16 4 S 2.35 104.52 3.73 -56.49 -0.21 104.31 16 5 O -1.01 -48.89 18.06 -127.37 -2.30 -51.19 16 6 O -0.99 -48.23 16.32 -127.37 -2.08 -50.31 16 7 C -0.34 -16.19 1.72 29.10 0.05 -16.14 16 8 H 0.11 5.52 6.05 -2.39 -0.01 5.50 16 9 C -0.51 -24.43 6.73 25.60 0.17 -24.26 16 10 H 0.08 3.66 7.82 -2.91 -0.02 3.64 16 11 C 0.05 2.31 5.45 84.65 0.46 2.77 16 12 N -0.88 -43.81 12.84 21.45 0.28 -43.53 16 13 Si 0.95 37.99 29.54 68.60 2.03 40.02 16 14 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 17 C -0.06 -3.00 4.77 -19.86 -0.09 -3.10 16 18 C -0.14 -6.36 8.52 22.27 0.19 -6.17 16 19 C -0.13 -4.79 10.05 22.27 0.22 -4.57 16 20 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 21 C -0.13 -4.49 10.05 22.27 0.22 -4.26 16 22 C -0.13 -5.58 9.67 22.27 0.22 -5.37 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 2.61 6.41 -2.39 -0.02 2.59 16 25 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 26 H 0.15 4.94 7.75 -2.39 -0.02 4.92 16 27 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 31 H 0.12 5.48 6.87 -2.91 -0.02 5.46 16 32 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.15 3.65 8.06 -2.92 -0.02 3.62 16 34 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 35 H 0.12 4.86 7.95 -2.91 -0.02 4.84 16 Total: -1.00 -62.54 305.83 1.84 -60.70 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 1.07 Total: 31.87 kcal Atomic # 6 Polarization: -94.92 SS G_CDS: 3.06 Total: -91.87 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.28 Total: -43.53 kcal Atomic # 8 Polarization: -97.12 SS G_CDS: -4.38 Total: -101.50 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 104.52 SS G_CDS: -0.21 Total: 104.31 kcal Total: -62.54 1.84 -60.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084253614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.941 kcal (2) G-P(sol) polarization free energy of solvation -62.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds