Wall clock time and date at job start Mon Mar 30 2020 07:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99755 * 2 1 4 4 C 1.38216 * 120.00037 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.96154 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00186 * 180.17630 * 2 1 3 8 8 C 1.50698 * 120.00333 * 0.03695 * 7 2 1 9 9 S 1.81402 * 109.47086 * 270.19369 * 8 7 2 10 10 O 1.42095 * 108.57879 * 294.48649 * 9 8 7 11 11 O 1.42102 * 108.57880 * 65.51215 * 9 8 7 12 12 C 1.81407 * 101.92019 * 179.97438 * 9 8 7 13 13 H 1.08990 * 109.47001 * 299.99830 * 12 9 8 14 14 C 1.52996 * 109.46982 * 60.00370 * 12 9 8 15 15 C 1.50704 * 109.46680 * 179.97438 * 12 9 8 16 16 H 1.07997 * 120.00468 * 0.02562 * 15 12 9 17 17 C 1.37879 * 119.99687 * 179.97438 * 15 12 9 18 18 N 1.31512 * 119.99801 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00165 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46897 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47126 * 120.00521 * 19 17 15 22 22 H 1.48502 * 109.46826 * 240.00749 * 19 17 15 23 23 H 1.09005 * 109.47388 * 90.00327 * 1 2 3 24 24 H 1.09003 * 109.47096 * 209.99502 * 1 2 3 25 25 H 1.08998 * 109.47316 * 329.99372 * 1 2 3 26 26 H 1.08002 * 120.00247 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47001 * 30.19228 * 8 7 2 31 31 H 1.08998 * 109.47342 * 150.19242 * 8 7 2 32 32 H 1.09000 * 109.47080 * 299.99929 * 14 12 9 33 33 H 1.09001 * 109.47294 * 59.99721 * 14 12 9 34 34 H 1.08995 * 109.47097 * 180.02562 * 14 12 9 35 35 H 0.97009 * 120.00053 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0003 6 6 3.5807 -1.1969 0.0011 7 6 2.1981 -1.1969 -0.0037 8 6 1.4447 -2.5020 -0.0085 9 16 1.1364 -3.0286 1.6998 10 8 2.3836 -3.3173 2.3166 11 8 0.2604 -2.0917 2.3113 12 6 0.2375 -4.5853 1.4556 13 1 -0.6775 -4.3925 0.8958 14 6 1.1164 -5.5646 0.6749 15 6 -0.1089 -5.1808 2.7960 16 1 0.1821 -4.6734 3.7038 17 6 -0.7984 -6.3729 2.8632 18 7 -1.1532 -6.9905 1.7577 19 14 -1.2285 -7.1108 4.5245 20 1 -0.7207 -6.2274 5.6048 21 1 -2.7032 -7.2387 4.6424 22 1 -0.6038 -8.4524 4.6469 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6582 2.1327 0.0004 27 1 4.1203 2.1328 -0.0010 28 1 5.3516 0.0002 -0.0011 29 1 4.1207 -2.1322 0.0018 30 1 0.4941 -2.3709 -0.5254 31 1 2.0356 -3.2608 -0.5216 32 1 1.3674 -5.1341 -0.2945 33 1 2.0315 -5.7574 1.2348 34 1 0.5761 -6.4997 0.5278 35 1 -1.6379 -7.8295 1.8049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084254484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:51 Heat of formation + Delta-G solvation = -60.937749 kcal Electronic energy + Delta-G solvation = -18641.171322 eV Core-core repulsion = 15731.026297 eV Total energy + Delta-G solvation = -2910.145024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.43090 -36.03117 -35.03002 -34.32155 -33.34830 -32.08857 -30.71544 -27.68101 -26.42768 -25.42036 -22.17894 -21.93621 -20.75634 -17.93341 -16.95247 -16.30357 -16.07111 -15.70714 -15.25397 -14.80990 -14.71080 -14.16293 -13.51924 -13.21565 -13.08005 -12.87240 -12.51740 -12.22083 -12.07434 -11.99521 -11.57754 -11.17727 -11.13377 -11.08228 -10.99292 -10.89129 -10.83128 -10.62074 -10.49044 -10.40191 -9.51758 -9.08652 -8.70793 -8.62976 -8.33037 -6.30545 -4.44279 0.80063 1.45329 1.54916 3.19269 3.26936 3.34565 3.79175 3.83752 4.20985 4.41819 4.64965 4.90931 4.94697 5.01575 5.03540 5.12224 5.39370 5.43904 5.63496 5.67857 5.77660 5.81172 5.98829 6.12177 6.28923 6.35116 6.37847 6.46133 6.51254 6.55173 6.70246 7.02858 7.06250 7.47371 7.51013 7.86830 8.55602 9.23353 10.75545 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.037927 B = 0.005394 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.077246 B = 5189.895308 C = 5305.895013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.103 4.103 7 C -0.077 4.077 8 C -0.592 4.592 9 S 2.386 3.614 10 O -0.951 6.951 11 O -0.953 6.953 12 C -0.369 4.369 13 H 0.091 0.909 14 C -0.143 4.143 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.078 3.922 18 N -0.878 5.878 19 Si 0.904 3.096 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 10.434 -7.005 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.122 4.122 7 C -0.078 4.078 8 C -0.714 4.714 9 S 2.573 3.427 10 O -0.949 6.949 11 O -0.950 6.950 12 C -0.484 4.484 13 H 0.108 0.892 14 C -0.202 4.202 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.127 4.127 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.566 10.756 -6.319 13.660 hybrid contribution -0.434 -0.787 -0.072 0.901 sum 5.133 9.969 -6.391 12.906 Atomic orbital electron populations 1.21041 0.90782 1.04768 1.02168 1.19872 0.96559 0.92411 0.98210 1.21008 0.94269 0.97290 1.01529 1.21147 0.94299 0.98007 1.00191 1.21091 0.99892 0.92299 1.01255 1.21164 0.93260 0.98940 0.98801 1.18969 0.93557 0.92280 1.02982 1.29642 1.09140 1.03485 1.29159 1.09507 0.76861 0.79633 0.76735 1.93447 1.43942 1.85376 1.72100 1.93445 1.66427 1.62646 1.72458 1.27333 1.06091 1.09718 1.05290 0.89153 1.21774 0.99213 1.03738 0.95513 1.20425 1.38764 1.07988 0.88726 0.91070 1.24873 0.94296 0.95999 0.97562 1.69849 1.37669 1.16984 1.26937 0.86313 0.78397 0.79180 0.83057 1.19035 1.20396 1.20380 0.91085 0.89712 0.91016 0.85827 0.86031 0.85825 0.85272 0.84678 0.84436 0.95671 0.92854 0.87518 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.19 36.00 0.33 -1.51 16 2 C -0.07 -1.07 5.88 -104.63 -0.62 -1.68 16 3 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 4 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 5 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 6 C -0.10 -1.56 9.70 -39.58 -0.38 -1.95 16 7 C -0.08 -1.26 5.14 -104.63 -0.54 -1.80 16 8 C -0.59 -9.62 4.77 36.00 0.17 -9.45 16 9 S 2.39 51.09 4.13 -107.50 -0.44 50.65 16 10 O -0.95 -22.81 17.91 -57.83 -1.04 -23.84 16 11 O -0.95 -22.40 16.28 -57.83 -0.94 -23.34 16 12 C -0.37 -8.62 2.69 -27.88 -0.08 -8.70 16 13 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 14 C -0.14 -3.09 8.72 37.16 0.32 -2.77 16 15 C -0.52 -14.04 8.58 -34.44 -0.30 -14.34 16 16 H 0.07 1.95 7.71 -52.49 -0.40 1.55 16 17 C 0.08 2.07 5.30 -17.82 -0.09 1.98 16 18 N -0.88 -23.40 11.32 55.43 0.63 -22.78 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.35 4.80 -51.93 -0.25 1.10 16 25 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 1.89 6.72 -51.92 -0.35 1.54 16 31 H 0.14 1.93 6.82 -51.93 -0.35 1.57 16 32 H 0.02 0.42 6.56 -51.93 -0.34 0.08 16 33 H 0.05 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.11 2.53 6.07 -51.93 -0.32 2.21 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -31.98 301.90 -9.14 -41.12 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.52 Total: 4.09 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: -2.35 Total: -46.12 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.63 Total: -22.78 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -1.98 Total: -47.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.44 Total: 50.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.98 -9.14 -41.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.817 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds