Wall clock time and date at job start Mon Mar 30 2020 07:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.99755 * 2 1 4 4 C 1.38216 * 120.00037 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.96154 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00186 * 180.17630 * 2 1 3 8 8 C 1.50698 * 120.00333 * 0.03695 * 7 2 1 9 9 S 1.81402 * 109.47086 * 270.19369 * 8 7 2 10 10 O 1.42095 * 108.57879 * 294.48649 * 9 8 7 11 11 O 1.42102 * 108.57880 * 65.51215 * 9 8 7 12 12 C 1.81407 * 101.92019 * 179.97438 * 9 8 7 13 13 H 1.08990 * 109.47001 * 299.99830 * 12 9 8 14 14 C 1.52996 * 109.46982 * 60.00370 * 12 9 8 15 15 C 1.50704 * 109.46680 * 179.97438 * 12 9 8 16 16 H 1.07997 * 120.00468 * 0.02562 * 15 12 9 17 17 C 1.37879 * 119.99687 * 179.97438 * 15 12 9 18 18 N 1.31512 * 119.99801 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00165 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46897 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47126 * 120.00521 * 19 17 15 22 22 H 1.48502 * 109.46826 * 240.00749 * 19 17 15 23 23 H 1.09005 * 109.47388 * 90.00327 * 1 2 3 24 24 H 1.09003 * 109.47096 * 209.99502 * 1 2 3 25 25 H 1.08998 * 109.47316 * 329.99372 * 1 2 3 26 26 H 1.08002 * 120.00247 * 0.02562 * 3 2 1 27 27 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47001 * 30.19228 * 8 7 2 31 31 H 1.08998 * 109.47342 * 150.19242 * 8 7 2 32 32 H 1.09000 * 109.47080 * 299.99929 * 14 12 9 33 33 H 1.09001 * 109.47294 * 59.99721 * 14 12 9 34 34 H 1.08995 * 109.47097 * 180.02562 * 14 12 9 35 35 H 0.97009 * 120.00053 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0003 6 6 3.5807 -1.1969 0.0011 7 6 2.1981 -1.1969 -0.0037 8 6 1.4447 -2.5020 -0.0085 9 16 1.1364 -3.0286 1.6998 10 8 2.3836 -3.3173 2.3166 11 8 0.2604 -2.0917 2.3113 12 6 0.2375 -4.5853 1.4556 13 1 -0.6775 -4.3925 0.8958 14 6 1.1164 -5.5646 0.6749 15 6 -0.1089 -5.1808 2.7960 16 1 0.1821 -4.6734 3.7038 17 6 -0.7984 -6.3729 2.8632 18 7 -1.1532 -6.9905 1.7577 19 14 -1.2285 -7.1108 4.5245 20 1 -0.7207 -6.2274 5.6048 21 1 -2.7032 -7.2387 4.6424 22 1 -0.6038 -8.4524 4.6469 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6582 2.1327 0.0004 27 1 4.1203 2.1328 -0.0010 28 1 5.3516 0.0002 -0.0011 29 1 4.1207 -2.1322 0.0018 30 1 0.4941 -2.3709 -0.5254 31 1 2.0356 -3.2608 -0.5216 32 1 1.3674 -5.1341 -0.2945 33 1 2.0315 -5.7574 1.2348 34 1 0.5761 -6.4997 0.5278 35 1 -1.6379 -7.8295 1.8049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084254484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:50 Heat of formation + Delta-G solvation = -81.479100 kcal Electronic energy + Delta-G solvation = -18642.062062 eV Core-core repulsion = 15731.026297 eV Total energy + Delta-G solvation = -2911.035764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47570 -37.80052 -36.79789 -36.21825 -34.45313 -33.18957 -32.58715 -28.87112 -27.64714 -27.18210 -23.88014 -23.11056 -21.85120 -19.61891 -18.80547 -17.82065 -17.48126 -17.04906 -16.80182 -16.29109 -16.07566 -15.76322 -14.93035 -14.56754 -14.21501 -14.08040 -13.95602 -13.77035 -13.44590 -13.24529 -13.03518 -12.98063 -12.89895 -12.82019 -12.75870 -12.43229 -12.29230 -12.01442 -11.91710 -11.88294 -11.38193 -10.89673 -10.56986 -9.74259 -9.49047 -8.30206 -6.50872 -0.79613 0.41663 0.44144 1.36341 1.38439 1.51094 2.18124 2.32390 2.74369 2.95608 2.95779 3.25459 3.54119 3.81506 4.00624 4.08110 4.23511 4.42573 4.44110 4.55337 4.58292 4.64161 4.76874 4.79612 4.80837 4.92956 5.09389 5.21521 5.32099 5.47036 5.49063 5.54981 5.62009 5.63522 6.01747 6.06157 6.53244 7.18972 8.74750 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.037927 B = 0.005394 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.077246 B = 5189.895308 C = 5305.895013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.122 4.122 7 C -0.112 4.112 8 C -0.558 4.558 9 S 2.391 3.609 10 O -0.987 6.987 11 O -0.984 6.984 12 C -0.390 4.390 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.553 4.553 16 H 0.050 0.950 17 C 0.037 3.963 18 N -0.894 5.894 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.267 1.267 22 H -0.267 1.267 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.134 0.866 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.264 12.016 -8.402 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.129 4.129 5 C -0.151 4.151 6 C -0.141 4.141 7 C -0.113 4.113 8 C -0.687 4.687 9 S 2.583 3.417 10 O -0.984 6.984 11 O -0.981 6.981 12 C -0.503 4.503 13 H 0.107 0.893 14 C -0.199 4.199 15 C -0.591 4.591 16 H 0.069 0.931 17 C -0.167 4.167 18 N -0.530 5.530 19 Si 0.777 3.223 20 H -0.198 1.198 21 H -0.192 1.192 22 H -0.192 1.192 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.168 0.832 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.152 0.848 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.400 12.282 -7.658 15.826 hybrid contribution -0.628 -1.112 0.265 1.304 sum 5.772 11.170 -7.394 14.586 Atomic orbital electron populations 1.21115 0.90459 1.04176 1.03577 1.20171 0.97197 0.92994 0.98441 1.21408 0.95066 0.97624 1.00725 1.21631 0.94186 0.99253 0.97818 1.21499 1.01477 0.91845 1.00273 1.21447 0.93142 1.00304 0.99167 1.19107 0.94283 0.92231 1.05715 1.29262 1.11273 1.04752 1.23412 1.08910 0.75519 0.78267 0.79033 1.93394 1.44517 1.85661 1.74829 1.93397 1.67139 1.62503 1.75105 1.27418 1.07072 1.12092 1.03757 0.89319 1.21694 0.98038 1.02625 0.97512 1.20689 1.39705 1.08834 0.89915 0.93133 1.25567 0.94181 0.96307 1.00629 1.69915 1.37735 1.17245 1.28124 0.85572 0.78716 0.78652 0.79370 1.19758 1.19214 1.19171 0.88653 0.92070 0.89885 0.83191 0.82481 0.83063 0.84841 0.82256 0.81873 0.91005 0.93739 0.89803 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.19 71.24 0.65 -2.95 16 2 C -0.09 -2.48 5.88 -19.87 -0.12 -2.60 16 3 C -0.13 -3.02 9.70 22.27 0.22 -2.81 16 4 C -0.11 -2.28 10.05 22.27 0.22 -2.06 16 5 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 6 C -0.12 -3.45 9.70 22.27 0.22 -3.23 16 7 C -0.11 -3.47 5.14 -19.87 -0.10 -3.57 16 8 C -0.56 -17.28 4.77 71.24 0.34 -16.94 16 9 S 2.39 103.83 4.13 -56.49 -0.23 103.60 16 10 O -0.99 -48.41 17.91 -127.37 -2.28 -50.70 16 11 O -0.98 -47.63 16.28 -127.37 -2.07 -49.70 16 12 C -0.39 -18.61 2.69 29.85 0.08 -18.53 16 13 H 0.09 4.16 8.14 -2.40 -0.02 4.14 16 14 C -0.14 -6.04 8.72 71.98 0.63 -5.41 16 15 C -0.55 -30.95 8.58 25.60 0.22 -30.73 16 16 H 0.05 2.93 7.71 -2.91 -0.02 2.91 16 17 C 0.04 1.99 5.30 84.66 0.45 2.43 16 18 N -0.89 -48.28 11.32 21.45 0.24 -48.04 16 19 Si 0.95 42.97 29.54 68.60 2.03 44.99 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 23 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.06 1.91 4.80 -2.39 -0.01 1.89 16 25 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 28 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 30 H 0.16 4.14 6.72 -2.39 -0.02 4.12 16 31 H 0.16 4.15 6.82 -2.39 -0.02 4.13 16 32 H 0.07 2.33 6.56 -2.39 -0.02 2.31 16 33 H 0.04 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.08 4.01 6.07 -2.39 -0.01 4.00 16 35 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 Total: -1.00 -71.33 301.90 1.79 -69.54 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.08 Total: 19.53 kcal Atomic # 6 Polarization: -92.25 SS G_CDS: 3.03 Total: -89.22 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.24 Total: -48.04 kcal Atomic # 8 Polarization: -96.04 SS G_CDS: -4.36 Total: -100.40 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 103.83 SS G_CDS: -0.23 Total: 103.60 kcal Total: -71.33 1.79 -69.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.940 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds