Wall clock time and date at job start Mon Mar 30 2020 07:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 120.00182 * 2 1 4 4 C 1.38213 * 119.99794 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00253 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00044 * 359.70822 * 5 4 3 7 7 C 1.38220 * 119.99844 * 179.97438 * 2 1 3 8 8 C 1.50697 * 119.99735 * 0.02562 * 7 2 1 9 9 S 1.81399 * 109.47390 * 89.99885 * 8 7 2 10 10 O 1.42107 * 108.57440 * 65.50912 * 9 8 7 11 11 O 1.42094 * 108.58128 * 294.48796 * 9 8 7 12 12 C 1.81399 * 101.92483 * 179.97438 * 9 8 7 13 13 H 1.09000 * 109.46960 * 65.00111 * 12 9 8 14 14 C 1.53006 * 109.47007 * 305.00370 * 12 9 8 15 15 C 1.50697 * 109.47103 * 185.00308 * 12 9 8 16 16 H 1.07994 * 120.00496 * 359.97438 * 15 12 9 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 9 18 18 N 1.31518 * 120.00216 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00016 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47195 * 90.00222 * 19 17 15 21 21 H 1.48504 * 109.47636 * 210.00509 * 19 17 15 22 22 H 1.48508 * 109.47108 * 330.00152 * 19 17 15 23 23 H 1.09000 * 109.47046 * 270.02066 * 1 2 3 24 24 H 1.09000 * 109.46845 * 30.01953 * 1 2 3 25 25 H 1.08998 * 109.47038 * 150.02107 * 1 2 3 26 26 H 1.07999 * 119.99638 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.99915 * 180.02562 * 4 3 2 28 28 H 1.08003 * 119.99969 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.00330 * 180.30118 * 6 5 4 30 30 H 1.09000 * 109.47256 * 329.99669 * 8 7 2 31 31 H 1.09001 * 109.46952 * 209.99769 * 8 7 2 32 32 H 1.09001 * 109.46998 * 179.97438 * 14 12 9 33 33 H 1.09000 * 109.47050 * 299.99686 * 14 12 9 34 34 H 1.09001 * 109.46801 * 59.99798 * 14 12 9 35 35 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5807 -1.1970 0.0061 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 16 1.1428 -3.0261 -1.7097 10 8 2.3924 -3.3140 -2.3221 11 8 0.2693 -2.0882 -2.3232 12 6 0.2441 -4.5837 -1.4714 13 1 -0.7142 -4.3808 -0.9934 14 6 1.0691 -5.5178 -0.5837 15 6 0.0100 -5.2382 -2.8084 16 1 0.3658 -4.7645 -3.7113 17 6 -0.6594 -6.4416 -2.8791 18 7 -1.0940 -7.0179 -1.7798 19 14 -0.9502 -7.2526 -4.5365 20 1 0.1886 -8.1511 -4.8546 21 1 -2.2061 -8.0436 -4.4871 22 1 -1.0645 -6.2077 -5.5857 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6583 2.1326 0.0004 27 1 4.1206 2.1325 0.0010 28 1 5.3518 -0.0001 0.0005 29 1 4.1206 -2.1324 0.0110 30 1 0.4920 -2.3716 0.5140 31 1 2.0334 -3.2616 0.5147 32 1 0.5289 -6.4536 -0.4401 33 1 2.0275 -5.7208 -1.0617 34 1 1.2385 -5.0443 0.3834 35 1 -1.5646 -7.8646 -1.8295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084254486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:57 Heat of formation + Delta-G solvation = -60.735003 kcal Electronic energy + Delta-G solvation = -18643.571552 eV Core-core repulsion = 15733.435320 eV Total energy + Delta-G solvation = -2910.136233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.43041 -36.02930 -35.02827 -34.32808 -33.35083 -32.09230 -30.72411 -27.68416 -26.43702 -25.40399 -22.16060 -21.95034 -20.76333 -17.92872 -16.94531 -16.31521 -16.06172 -15.70795 -15.25992 -14.81136 -14.71390 -14.16095 -13.51520 -13.22051 -13.08128 -12.86632 -12.51325 -12.22994 -12.07989 -12.00035 -11.57287 -11.18631 -11.13628 -11.05592 -10.98473 -10.89058 -10.83556 -10.65365 -10.48000 -10.39982 -9.53664 -9.07881 -8.70661 -8.62661 -8.32959 -6.30298 -4.44140 0.80280 1.45389 1.55033 3.20982 3.26715 3.33113 3.79223 3.83652 4.21143 4.41949 4.65263 4.91107 4.94743 5.01668 5.03559 5.12320 5.39299 5.43983 5.63567 5.68016 5.77368 5.81092 5.98564 6.12201 6.28489 6.34509 6.36685 6.45038 6.51348 6.55321 6.70212 7.01799 7.06300 7.46898 7.50922 7.86661 8.55609 9.23455 10.75772 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038038 B = 0.005381 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.922756 B = 5202.675383 C = 5296.690045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.103 4.103 7 C -0.077 4.077 8 C -0.592 4.592 9 S 2.387 3.613 10 O -0.951 6.951 11 O -0.954 6.954 12 C -0.369 4.369 13 H 0.091 0.909 14 C -0.145 4.145 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.078 3.922 18 N -0.878 5.878 19 Si 0.904 3.096 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.267 1.267 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 10.510 7.092 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.145 4.145 6 C -0.122 4.122 7 C -0.078 4.078 8 C -0.714 4.714 9 S 2.573 3.427 10 O -0.948 6.948 11 O -0.951 6.951 12 C -0.484 4.484 13 H 0.109 0.891 14 C -0.203 4.203 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.127 4.127 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.370 10.834 6.407 13.685 hybrid contribution -0.357 -0.825 0.057 0.900 sum 5.014 10.009 6.464 12.927 Atomic orbital electron populations 1.21036 0.90797 1.04721 1.02162 1.19875 0.96546 0.92416 0.98242 1.21005 0.94269 0.97288 1.01529 1.21144 0.94298 0.98007 1.00201 1.21091 0.99896 0.92300 1.01236 1.21163 0.93260 0.98936 0.98797 1.18976 0.93560 0.92282 1.02959 1.29652 1.09122 1.03463 1.29198 1.09498 0.76923 0.79577 0.76717 1.93450 1.43715 1.85368 1.72250 1.93445 1.66624 1.62622 1.72425 1.27334 1.06338 1.09849 1.04884 0.89087 1.21802 0.99697 1.03934 0.94917 1.20384 1.39386 1.07080 0.89126 0.91110 1.24871 0.94055 0.96224 0.97555 1.69838 1.36707 1.17672 1.27234 0.86371 0.77992 0.79562 0.83030 1.19946 1.20678 1.19149 0.91078 0.91021 0.89769 0.85833 0.86035 0.85823 0.85275 0.84682 0.84365 0.87502 0.92958 0.95548 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.19 36.01 0.33 -1.50 16 2 C -0.07 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 4 C -0.12 -1.45 10.05 -39.59 -0.40 -1.84 16 5 C -0.13 -1.66 10.05 -39.59 -0.40 -2.06 16 6 C -0.10 -1.56 9.70 -39.59 -0.38 -1.95 16 7 C -0.08 -1.26 5.14 -104.62 -0.54 -1.80 16 8 C -0.59 -9.62 4.62 36.00 0.17 -9.46 16 9 S 2.39 51.13 4.15 -107.50 -0.45 50.68 16 10 O -0.95 -22.87 18.05 -57.83 -1.04 -23.91 16 11 O -0.95 -22.41 16.32 -57.83 -0.94 -23.35 16 12 C -0.37 -8.62 2.73 -27.88 -0.08 -8.69 16 13 H 0.09 2.09 8.14 -51.92 -0.42 1.67 16 14 C -0.14 -3.09 8.68 37.16 0.32 -2.77 16 15 C -0.52 -14.07 8.57 -34.44 -0.30 -14.37 16 16 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 17 C 0.08 2.08 5.30 -17.82 -0.09 1.99 16 18 N -0.88 -23.41 11.32 55.43 0.63 -22.79 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 25 H 0.08 1.33 4.82 -51.93 -0.25 1.08 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.13 1.89 6.70 -51.92 -0.35 1.54 16 31 H 0.14 1.95 6.72 -51.92 -0.35 1.60 16 32 H 0.11 2.52 6.07 -51.93 -0.32 2.21 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.03 0.44 6.39 -51.93 -0.33 0.11 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -31.99 301.77 -9.15 -41.15 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.51 Total: 4.13 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: -2.36 Total: -46.13 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.63 Total: -22.79 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.99 Total: -47.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 51.13 SS G_CDS: -0.45 Total: 50.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.99 -9.15 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.590 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds