Wall clock time and date at job start Mon Mar 30 2020 07:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 120.00182 * 2 1 4 4 C 1.38213 * 119.99794 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00253 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00044 * 359.70822 * 5 4 3 7 7 C 1.38220 * 119.99844 * 179.97438 * 2 1 3 8 8 C 1.50697 * 119.99735 * 0.02562 * 7 2 1 9 9 S 1.81399 * 109.47390 * 89.99885 * 8 7 2 10 10 O 1.42107 * 108.57440 * 65.50912 * 9 8 7 11 11 O 1.42094 * 108.58128 * 294.48796 * 9 8 7 12 12 C 1.81399 * 101.92483 * 179.97438 * 9 8 7 13 13 H 1.09000 * 109.46960 * 65.00111 * 12 9 8 14 14 C 1.53006 * 109.47007 * 305.00370 * 12 9 8 15 15 C 1.50697 * 109.47103 * 185.00308 * 12 9 8 16 16 H 1.07994 * 120.00496 * 359.97438 * 15 12 9 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 9 18 18 N 1.31518 * 120.00216 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00016 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47195 * 90.00222 * 19 17 15 21 21 H 1.48504 * 109.47636 * 210.00509 * 19 17 15 22 22 H 1.48508 * 109.47108 * 330.00152 * 19 17 15 23 23 H 1.09000 * 109.47046 * 270.02066 * 1 2 3 24 24 H 1.09000 * 109.46845 * 30.01953 * 1 2 3 25 25 H 1.08998 * 109.47038 * 150.02107 * 1 2 3 26 26 H 1.07999 * 119.99638 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.99915 * 180.02562 * 4 3 2 28 28 H 1.08003 * 119.99969 * 179.97438 * 5 4 3 29 29 H 1.08004 * 120.00330 * 180.30118 * 6 5 4 30 30 H 1.09000 * 109.47256 * 329.99669 * 8 7 2 31 31 H 1.09001 * 109.46952 * 209.99769 * 8 7 2 32 32 H 1.09001 * 109.46998 * 179.97438 * 14 12 9 33 33 H 1.09000 * 109.47050 * 299.99686 * 14 12 9 34 34 H 1.09001 * 109.46801 * 59.99798 * 14 12 9 35 35 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5807 -1.1970 0.0061 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 16 1.1428 -3.0261 -1.7097 10 8 2.3924 -3.3140 -2.3221 11 8 0.2693 -2.0882 -2.3232 12 6 0.2441 -4.5837 -1.4714 13 1 -0.7142 -4.3808 -0.9934 14 6 1.0691 -5.5178 -0.5837 15 6 0.0100 -5.2382 -2.8084 16 1 0.3658 -4.7645 -3.7113 17 6 -0.6594 -6.4416 -2.8791 18 7 -1.0940 -7.0179 -1.7798 19 14 -0.9502 -7.2526 -4.5365 20 1 0.1886 -8.1511 -4.8546 21 1 -2.2061 -8.0436 -4.4871 22 1 -1.0645 -6.2077 -5.5857 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6583 2.1326 0.0004 27 1 4.1206 2.1325 0.0010 28 1 5.3518 -0.0001 0.0005 29 1 4.1206 -2.1324 0.0110 30 1 0.4920 -2.3716 0.5140 31 1 2.0334 -3.2616 0.5147 32 1 0.5289 -6.4536 -0.4401 33 1 2.0275 -5.7208 -1.0617 34 1 1.2385 -5.0443 0.3834 35 1 -1.5646 -7.8646 -1.8295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084254486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:55 Heat of formation + Delta-G solvation = -81.318056 kcal Electronic energy + Delta-G solvation = -18644.464101 eV Core-core repulsion = 15733.435320 eV Total energy + Delta-G solvation = -2911.028781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.47495 -37.80054 -36.79860 -36.22147 -34.45878 -33.19656 -32.58700 -28.88123 -27.65946 -27.15018 -23.87586 -23.11273 -21.85537 -19.61481 -18.80150 -17.82276 -17.48028 -17.05714 -16.79755 -16.30032 -16.07850 -15.75778 -14.91732 -14.57036 -14.21148 -14.08183 -13.95947 -13.78296 -13.44836 -13.23625 -13.03429 -12.96995 -12.88547 -12.82894 -12.76260 -12.44491 -12.28233 -12.01819 -11.91340 -11.87693 -11.39443 -10.88770 -10.57141 -9.74199 -9.48975 -8.30010 -6.50817 -0.79523 0.41732 0.44253 1.37787 1.38492 1.49733 2.17921 2.32423 2.74321 2.95342 2.96509 3.25507 3.54175 3.81548 4.00723 4.08155 4.23537 4.42584 4.44367 4.55415 4.57858 4.64079 4.76656 4.79757 4.80868 4.92891 5.09437 5.21066 5.32013 5.46977 5.49189 5.55094 5.62110 5.63500 6.01919 6.06244 6.53193 7.18977 8.74743 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038038 B = 0.005381 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.922756 B = 5202.675383 C = 5296.690045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.558 4.558 9 S 2.391 3.609 10 O -0.987 6.987 11 O -0.985 6.985 12 C -0.389 4.389 13 H 0.088 0.912 14 C -0.141 4.141 15 C -0.554 4.554 16 H 0.051 0.949 17 C 0.037 3.963 18 N -0.894 5.894 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.272 1.272 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.150 0.850 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.133 0.867 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 12.099 8.490 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.129 4.129 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.113 4.113 8 C -0.687 4.687 9 S 2.583 3.417 10 O -0.984 6.984 11 O -0.982 6.982 12 C -0.503 4.503 13 H 0.106 0.894 14 C -0.200 4.200 15 C -0.592 4.592 16 H 0.069 0.931 17 C -0.167 4.167 18 N -0.530 5.530 19 Si 0.776 3.224 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.196 1.196 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.168 0.832 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.214 12.369 7.748 15.863 hybrid contribution -0.556 -1.150 -0.281 1.308 sum 5.657 11.219 7.466 14.616 Atomic orbital electron populations 1.21113 0.90436 1.04151 1.03591 1.20176 0.97209 0.92978 0.98436 1.21407 0.95056 0.97634 1.00720 1.21628 0.94198 0.99243 0.97828 1.21497 1.01474 0.91858 1.00282 1.21443 0.93151 1.00285 0.99170 1.19112 0.94280 0.92239 1.05705 1.29269 1.11283 1.04726 1.23426 1.08902 0.75562 0.78214 0.79031 1.93395 1.44339 1.85662 1.74999 1.93397 1.67303 1.62471 1.75068 1.27419 1.07251 1.12146 1.03508 0.89430 1.21726 0.98496 1.02914 0.96833 1.20661 1.40189 1.08041 0.90359 0.93107 1.25568 0.93831 0.96663 1.00611 1.69908 1.36751 1.17929 1.28414 0.85631 0.78585 0.78717 0.79436 1.19192 1.19204 1.19644 0.88624 0.89884 0.92092 0.83180 0.82490 0.83083 0.84867 0.82202 0.81862 0.89821 0.93671 0.90839 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.19 71.24 0.66 -2.92 16 2 C -0.09 -2.47 5.88 -19.86 -0.12 -2.59 16 3 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 4 C -0.11 -2.28 10.05 22.27 0.22 -2.06 16 5 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 6 C -0.12 -3.45 9.70 22.27 0.22 -3.23 16 7 C -0.11 -3.47 5.14 -19.87 -0.10 -3.57 16 8 C -0.56 -17.27 4.62 71.24 0.33 -16.94 16 9 S 2.39 103.90 4.15 -56.49 -0.23 103.66 16 10 O -0.99 -48.61 18.05 -127.37 -2.30 -50.91 16 11 O -0.99 -47.58 16.32 -127.37 -2.08 -49.66 16 12 C -0.39 -18.61 2.73 29.85 0.08 -18.53 16 13 H 0.09 4.14 8.14 -2.39 -0.02 4.12 16 14 C -0.14 -6.03 8.68 71.98 0.62 -5.40 16 15 C -0.55 -31.03 8.57 25.60 0.22 -30.81 16 16 H 0.05 2.94 7.71 -2.91 -0.02 2.92 16 17 C 0.04 1.99 5.30 84.65 0.45 2.44 16 18 N -0.89 -48.32 11.32 21.45 0.24 -48.07 16 19 Si 0.95 42.95 29.54 68.60 2.03 44.97 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 25 H 0.06 1.88 4.82 -2.39 -0.01 1.87 16 26 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.16 4.13 6.70 -2.39 -0.02 4.12 16 31 H 0.16 4.17 6.72 -2.39 -0.02 4.15 16 32 H 0.08 3.99 6.07 -2.39 -0.01 3.97 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.35 6.39 -2.39 -0.02 2.34 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -71.39 301.77 1.76 -69.63 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.08 Total: 19.62 kcal Atomic # 6 Polarization: -92.27 SS G_CDS: 3.02 Total: -89.25 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.24 Total: -48.07 kcal Atomic # 8 Polarization: -96.19 SS G_CDS: -4.38 Total: -100.56 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 103.90 SS G_CDS: -0.23 Total: 103.66 kcal Total: -71.39 1.76 -69.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.686 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds