Wall clock time and date at job start Mon Mar 30 2020 08:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47116 * 2 1 4 4 H 1.08993 * 109.46852 * 185.97826 * 3 2 1 5 5 C 1.50701 * 109.46713 * 305.97569 * 3 2 1 6 6 H 1.07996 * 120.00424 * 120.00076 * 5 3 2 7 7 C 1.37878 * 119.99774 * 299.99807 * 5 3 2 8 8 N 1.31513 * 120.00201 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47446 * 59.99927 * 9 7 5 11 11 H 1.48501 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47036 * 299.99777 * 9 7 5 13 13 S 1.81401 * 109.47162 * 65.97092 * 3 2 1 14 14 O 1.42090 * 110.54486 * 302.47512 * 13 3 2 15 15 O 1.42098 * 110.54015 * 165.72180 * 13 3 2 16 16 C 1.76199 * 104.44723 * 54.10095 * 13 3 2 17 17 C 1.38260 * 119.99988 * 84.68307 * 16 13 3 18 18 C 1.38213 * 119.99729 * 179.72236 * 17 16 13 19 19 C 1.38257 * 120.00148 * 0.25185 * 18 17 16 20 20 C 1.38214 * 120.00202 * 0.02754 * 19 18 17 21 21 C 1.50698 * 120.00101 * 179.97438 * 20 19 18 22 22 C 1.38220 * 119.99897 * 264.91557 * 16 13 3 23 23 H 1.08995 * 109.46815 * 171.83700 * 1 2 3 24 24 H 1.09007 * 109.46947 * 291.83157 * 1 2 3 25 25 H 1.08994 * 109.47382 * 51.83399 * 1 2 3 26 26 H 1.08997 * 109.47534 * 240.00253 * 2 1 3 27 27 H 1.09001 * 109.47644 * 119.99463 * 2 1 3 28 28 H 0.97000 * 120.00181 * 179.97438 * 8 7 5 29 29 H 1.07997 * 120.00329 * 359.97438 * 17 16 13 30 30 H 1.08003 * 119.99717 * 180.27656 * 18 17 16 31 31 H 1.08006 * 119.99805 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.47245 * 89.99795 * 21 20 19 33 33 H 1.08999 * 109.46695 * 209.99523 * 21 20 19 34 34 H 1.08996 * 109.47298 * 329.99593 * 21 20 19 35 35 H 1.07999 * 119.99935 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1246 1.4444 -0.1070 5 6 1.4205 2.1943 -1.1499 6 1 0.8138 3.0673 -0.9600 7 6 1.6283 1.7675 -2.4443 8 7 2.3667 0.7041 -2.6756 9 14 0.8609 2.6997 -3.8697 10 1 1.3563 4.0996 -3.8697 11 1 1.2328 2.0426 -5.1484 12 1 -0.6170 2.6976 -3.7242 13 16 1.5850 2.2448 1.5620 14 8 0.1774 2.2044 1.7519 15 8 2.3128 3.4533 1.7324 16 6 2.2224 1.1744 2.8080 17 6 3.5407 1.2883 3.2090 18 6 4.0391 0.4524 4.1904 19 6 3.2209 -0.5011 4.7675 20 6 1.9047 -0.6188 4.3625 21 6 1.0130 -1.6585 4.9910 22 6 1.4059 0.2176 3.3811 23 1 -0.3633 -1.0172 -0.1459 24 1 -0.3633 0.3822 0.9540 25 1 -0.3634 0.6350 -0.8079 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 2.5126 0.4036 -3.5862 29 1 4.1798 2.0331 2.7583 30 1 5.0676 0.5444 4.5069 31 1 3.6105 -1.1545 5.5341 32 1 0.5161 -1.2321 5.8624 33 1 0.2644 -1.9806 4.2672 34 1 1.6137 -2.5146 5.2980 35 1 0.3773 0.1259 3.0648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084254688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:07 Heat of formation + Delta-G solvation = -60.745711 kcal Electronic energy + Delta-G solvation = -18996.665727 eV Core-core repulsion = 16086.529030 eV Total energy + Delta-G solvation = -2910.136697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.09993 -36.25841 -35.02714 -34.91768 -32.74631 -31.62762 -30.85058 -27.37886 -26.86965 -24.21764 -22.83234 -21.56876 -20.63034 -18.06130 -17.08350 -16.53285 -15.81363 -15.50851 -15.31957 -14.48533 -14.21873 -14.06562 -13.71673 -13.19229 -13.03875 -12.72132 -12.34753 -12.23415 -12.09192 -11.82181 -11.66947 -11.12298 -11.10347 -11.01332 -10.94470 -10.74049 -10.62167 -10.29894 -10.14143 -9.81314 -9.44577 -9.09217 -8.81954 -8.61053 -8.54518 -6.29589 -4.43385 1.01383 1.29421 1.48876 3.22515 3.25543 3.30203 3.67155 3.92736 4.23358 4.76965 4.88422 4.89520 4.99619 5.13815 5.26410 5.34189 5.48260 5.59008 5.70946 5.80459 6.03916 6.10576 6.18179 6.25788 6.33131 6.43150 6.44256 6.56326 6.87009 6.91949 6.96945 7.06522 7.43790 7.48618 7.58894 7.87366 8.53835 9.22641 10.76057 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.006576 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.946782 B = 4256.813101 C = 4464.738728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 C -0.354 4.354 4 H 0.093 0.907 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.084 3.916 8 N -0.873 5.873 9 Si 0.901 3.099 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.269 1.269 13 S 2.456 3.544 14 O -0.955 6.955 15 O -0.968 6.968 16 C -0.639 4.639 17 C -0.033 4.033 18 C -0.141 4.141 19 C -0.081 4.081 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.022 4.022 23 H 0.033 0.967 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.032 0.968 28 H 0.268 0.732 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -5.427 10.546 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.146 4.146 3 C -0.470 4.470 4 H 0.111 0.889 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.123 4.123 8 N -0.508 5.508 9 Si 0.727 3.273 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.194 1.194 13 S 2.641 3.359 14 O -0.952 6.952 15 O -0.965 6.965 16 C -0.723 4.723 17 C -0.052 4.052 18 C -0.160 4.160 19 C -0.099 4.099 20 C -0.115 4.115 21 C -0.169 4.169 22 C -0.040 4.040 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.778 -4.778 10.652 11.700 hybrid contribution 0.286 -0.329 -0.676 0.804 sum 1.064 -5.106 9.976 11.257 Atomic orbital electron populations 1.22063 0.96219 1.00161 1.03701 1.21360 0.95901 0.95012 1.02338 1.27313 1.06531 1.03918 1.09267 0.88905 1.20250 1.33776 1.12731 0.89479 0.91211 1.24810 0.94208 0.94705 0.98528 1.69845 1.36672 1.22957 1.21371 0.86489 0.80119 0.80195 0.80525 1.19526 1.20806 1.19449 1.07195 0.75029 0.75727 0.77979 1.93414 1.29134 1.86619 1.86022 1.93437 1.73819 1.42846 1.86386 1.31150 1.03885 1.16587 1.20636 1.20943 0.93377 0.96346 0.94518 1.21204 0.99992 0.96781 0.98003 1.21210 0.93339 0.97190 0.98163 1.20016 0.95036 0.98424 0.98009 1.20779 0.98806 0.96608 1.00734 1.20893 0.99305 0.91033 0.92799 0.94817 0.92027 0.90573 0.87432 0.94984 0.92188 0.84592 0.85546 0.85921 0.91251 0.91135 0.91630 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.20 37.16 0.34 -3.11 16 2 C -0.11 -2.32 5.30 -26.73 -0.14 -2.46 16 3 C -0.35 -8.26 2.63 -27.88 -0.07 -8.33 16 4 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 5 C -0.52 -13.57 6.92 -34.44 -0.24 -13.81 16 6 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 7 C 0.08 2.16 5.26 -17.82 -0.09 2.07 16 8 N -0.87 -22.85 11.39 55.43 0.63 -22.22 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 S 2.46 53.86 4.52 -107.50 -0.49 53.37 16 14 O -0.95 -22.12 14.25 -57.54 -0.82 -22.94 16 15 O -0.97 -23.38 17.29 -57.54 -0.99 -24.38 16 16 C -0.64 -11.86 4.68 -39.58 -0.19 -12.05 16 17 C -0.03 -0.55 9.47 -39.58 -0.37 -0.93 16 18 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 19 C -0.08 -1.04 9.70 -39.58 -0.38 -1.42 16 20 C -0.11 -1.59 5.88 -104.62 -0.62 -2.21 16 21 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 22 C -0.02 -0.37 8.35 -39.58 -0.33 -0.70 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.25 5.14 -51.93 -0.27 0.98 16 25 H 0.08 1.75 6.71 -51.93 -0.35 1.40 16 26 H 0.11 2.56 6.25 -51.93 -0.32 2.24 16 27 H 0.03 0.61 6.41 -51.93 -0.33 0.28 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.14 2.15 7.71 -52.49 -0.40 1.75 16 30 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.14 2.29 6.89 -52.49 -0.36 1.93 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -30.14 297.60 -8.87 -39.01 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.53 Total: 3.63 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: -2.13 Total: -46.11 kcal Atomic # 7 Polarization: -22.85 SS G_CDS: 0.63 Total: -22.22 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.81 Total: -47.32 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.49 Total: 53.37 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.14 -8.87 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.734 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds