Wall clock time and date at job start Mon Mar 30 2020 08:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47116 * 2 1 4 4 H 1.08993 * 109.46852 * 185.97826 * 3 2 1 5 5 C 1.50701 * 109.46713 * 305.97569 * 3 2 1 6 6 H 1.07996 * 120.00424 * 120.00076 * 5 3 2 7 7 C 1.37878 * 119.99774 * 299.99807 * 5 3 2 8 8 N 1.31513 * 120.00201 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99826 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47446 * 59.99927 * 9 7 5 11 11 H 1.48501 * 109.47096 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47036 * 299.99777 * 9 7 5 13 13 S 1.81401 * 109.47162 * 65.97092 * 3 2 1 14 14 O 1.42090 * 110.54486 * 302.47512 * 13 3 2 15 15 O 1.42098 * 110.54015 * 165.72180 * 13 3 2 16 16 C 1.76199 * 104.44723 * 54.10095 * 13 3 2 17 17 C 1.38260 * 119.99988 * 84.68307 * 16 13 3 18 18 C 1.38213 * 119.99729 * 179.72236 * 17 16 13 19 19 C 1.38257 * 120.00148 * 0.25185 * 18 17 16 20 20 C 1.38214 * 120.00202 * 0.02754 * 19 18 17 21 21 C 1.50698 * 120.00101 * 179.97438 * 20 19 18 22 22 C 1.38220 * 119.99897 * 264.91557 * 16 13 3 23 23 H 1.08995 * 109.46815 * 171.83700 * 1 2 3 24 24 H 1.09007 * 109.46947 * 291.83157 * 1 2 3 25 25 H 1.08994 * 109.47382 * 51.83399 * 1 2 3 26 26 H 1.08997 * 109.47534 * 240.00253 * 2 1 3 27 27 H 1.09001 * 109.47644 * 119.99463 * 2 1 3 28 28 H 0.97000 * 120.00181 * 179.97438 * 8 7 5 29 29 H 1.07997 * 120.00329 * 359.97438 * 17 16 13 30 30 H 1.08003 * 119.99717 * 180.27656 * 18 17 16 31 31 H 1.08006 * 119.99805 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.47245 * 89.99795 * 21 20 19 33 33 H 1.08999 * 109.46695 * 209.99523 * 21 20 19 34 34 H 1.08996 * 109.47298 * 329.99593 * 21 20 19 35 35 H 1.07999 * 119.99935 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1246 1.4444 -0.1070 5 6 1.4205 2.1943 -1.1499 6 1 0.8138 3.0673 -0.9600 7 6 1.6283 1.7675 -2.4443 8 7 2.3667 0.7041 -2.6756 9 14 0.8609 2.6997 -3.8697 10 1 1.3563 4.0996 -3.8697 11 1 1.2328 2.0426 -5.1484 12 1 -0.6170 2.6976 -3.7242 13 16 1.5850 2.2448 1.5620 14 8 0.1774 2.2044 1.7519 15 8 2.3128 3.4533 1.7324 16 6 2.2224 1.1744 2.8080 17 6 3.5407 1.2883 3.2090 18 6 4.0391 0.4524 4.1904 19 6 3.2209 -0.5011 4.7675 20 6 1.9047 -0.6188 4.3625 21 6 1.0130 -1.6585 4.9910 22 6 1.4059 0.2176 3.3811 23 1 -0.3633 -1.0172 -0.1459 24 1 -0.3633 0.3822 0.9540 25 1 -0.3634 0.6350 -0.8079 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 2.5126 0.4036 -3.5862 29 1 4.1798 2.0331 2.7583 30 1 5.0676 0.5444 4.5069 31 1 3.6105 -1.1545 5.5341 32 1 0.5161 -1.2321 5.8624 33 1 0.2644 -1.9806 4.2672 34 1 1.6137 -2.5146 5.2980 35 1 0.3773 0.1259 3.0648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084254688.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:07 Heat of formation + Delta-G solvation = -79.274775 kcal Electronic energy + Delta-G solvation = -18997.469208 eV Core-core repulsion = 16086.529030 eV Total energy + Delta-G solvation = -2910.940177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24636 -38.06985 -36.87164 -36.74038 -33.84018 -33.44539 -32.10094 -29.21934 -27.85236 -26.07528 -24.09974 -22.71467 -22.41864 -19.67110 -18.78142 -18.17067 -17.52996 -16.94377 -16.78368 -16.08687 -15.89837 -15.25200 -14.96050 -14.65280 -14.51733 -14.26030 -14.04966 -13.53547 -13.20335 -13.12356 -13.00896 -12.94022 -12.86560 -12.81271 -12.60944 -12.38660 -12.11750 -12.02147 -11.81067 -11.40229 -11.27695 -10.79111 -10.50153 -10.17075 -9.71748 -8.25967 -6.45931 -0.57043 -0.06543 0.34113 1.41743 1.42491 1.50330 2.24442 2.36924 2.54005 3.00925 3.15328 3.41474 3.86511 3.95100 4.10064 4.34715 4.35325 4.39463 4.48790 4.56149 4.63748 4.84979 4.88501 4.96231 5.10197 5.14777 5.20882 5.22813 5.27478 5.33061 5.47829 5.50050 5.60498 5.81051 5.96386 6.01690 6.55350 7.22283 8.78892 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.006576 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.946782 B = 4256.813101 C = 4464.738728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.367 4.367 4 H 0.082 0.918 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.045 3.955 8 N -0.892 5.892 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.266 1.266 13 S 2.468 3.532 14 O -0.975 6.975 15 O -1.000 7.000 16 C -0.653 4.653 17 C -0.058 4.058 18 C -0.134 4.134 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.043 4.043 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -7.310 12.533 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.138 4.138 3 C -0.482 4.482 4 H 0.100 0.900 5 C -0.586 4.586 6 H 0.076 0.924 7 C -0.159 4.159 8 N -0.527 5.527 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.196 1.196 12 H -0.191 1.191 13 S 2.658 3.342 14 O -0.972 6.972 15 O -0.998 6.998 16 C -0.741 4.741 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.170 4.170 22 C -0.062 4.062 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.180 0.820 31 H 0.185 0.815 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.260 -6.629 12.586 14.280 hybrid contribution 0.191 0.179 -1.137 1.167 sum 1.451 -6.450 11.449 13.221 Atomic orbital electron populations 1.22015 0.95759 1.01145 1.02932 1.21250 0.96271 0.93853 1.02416 1.27337 1.05659 1.04963 1.10231 0.90043 1.20491 1.34140 1.12923 0.91033 0.92439 1.25467 0.94563 0.95433 1.00444 1.69926 1.37230 1.23679 1.21896 0.85740 0.79492 0.79169 0.78341 1.19437 1.19622 1.19119 1.06202 0.74429 0.75642 0.77957 1.93374 1.30403 1.87132 1.86325 1.93383 1.74334 1.45176 1.86867 1.30407 1.05329 1.17644 1.20761 1.21141 0.92719 0.97649 0.96164 1.21632 1.01830 0.95538 0.96300 1.21775 0.92479 0.96579 0.97866 1.20454 0.96221 0.97992 0.96622 1.20887 0.98719 0.96416 1.00957 1.21034 0.99135 0.91713 0.94319 0.92323 0.91525 0.93143 0.89548 0.92474 0.91953 0.84976 0.81985 0.81454 0.89862 0.91138 0.89041 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.84 9.20 71.98 0.66 -6.18 16 2 C -0.10 -4.35 5.30 30.60 0.16 -4.19 16 3 C -0.37 -17.76 2.63 29.85 0.08 -17.68 16 4 H 0.08 4.04 8.14 -2.39 -0.02 4.02 16 5 C -0.55 -29.49 6.92 25.60 0.18 -29.32 16 6 H 0.06 3.14 7.71 -2.91 -0.02 3.12 16 7 C 0.05 2.38 5.26 84.66 0.45 2.83 16 8 N -0.89 -47.56 11.39 21.45 0.24 -47.32 16 9 Si 0.95 41.84 29.54 68.60 2.03 43.86 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 S 2.47 112.08 4.52 -56.49 -0.26 111.83 16 14 O -0.98 -46.64 14.25 -127.65 -1.82 -48.46 16 15 O -1.00 -50.46 17.29 -127.65 -2.21 -52.66 16 16 C -0.65 -24.09 4.68 22.27 0.10 -23.99 16 17 C -0.06 -1.87 9.47 22.27 0.21 -1.66 16 18 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 19 C -0.07 -1.45 9.70 22.27 0.22 -1.23 16 20 C -0.11 -2.74 5.88 -19.87 -0.12 -2.85 16 21 C -0.11 -1.90 10.01 71.24 0.71 -1.19 16 22 C -0.04 -1.39 8.35 22.27 0.19 -1.21 16 23 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.07 2.73 5.14 -2.38 -0.01 2.72 16 25 H 0.05 2.38 6.71 -2.39 -0.02 2.36 16 26 H 0.09 4.19 6.25 -2.39 -0.01 4.18 16 27 H 0.06 2.18 6.41 -2.39 -0.02 2.17 16 28 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.13 4.24 7.71 -2.91 -0.02 4.21 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.14 4.37 6.89 -2.91 -0.02 4.35 16 Total: -1.00 -66.87 297.60 2.14 -64.74 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.08 Total: 17.67 kcal Atomic # 6 Polarization: -92.71 SS G_CDS: 3.06 Total: -89.65 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.24 Total: -47.32 kcal Atomic # 8 Polarization: -97.10 SS G_CDS: -4.03 Total: -101.12 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 112.08 SS G_CDS: -0.26 Total: 111.83 kcal Total: -66.87 2.14 -64.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084254688.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.539 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds