Wall clock time and date at job start Mon Mar 30 2020 08:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 H 1.08999 * 109.47341 * 176.57360 * 3 2 1 5 5 C 1.50706 * 109.47043 * 56.57084 * 3 2 1 6 6 H 1.08001 * 120.00182 * 240.00029 * 5 3 2 7 7 C 1.37877 * 119.99824 * 60.00173 * 5 3 2 8 8 N 1.31518 * 119.99949 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47039 * 60.00319 * 9 7 5 11 11 H 1.48508 * 109.46911 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47402 * 299.99783 * 9 7 5 13 13 S 1.81406 * 109.47162 * 296.57491 * 3 2 1 14 14 O 1.42096 * 109.46883 * 194.49648 * 13 3 2 15 15 C 1.76207 * 102.99720 * 303.55226 * 13 3 2 16 16 C 1.38168 * 120.02690 * 96.91449 * 15 13 3 17 17 C 1.38244 * 120.05032 * 180.29471 * 16 15 13 18 18 C 1.38287 * 120.11411 * 359.44916 * 17 16 15 19 19 C 1.38124 * 120.05642 * 0.55242 * 18 17 16 20 20 C 1.38711 * 120.02589 * 276.93410 * 15 13 3 21 21 O 1.35902 * 120.05319 * 359.95777 * 20 15 13 22 22 C 1.42898 * 116.99518 * 180.02562 * 21 20 15 23 23 H 1.08996 * 109.47472 * 294.92511 * 1 2 3 24 24 H 1.08995 * 109.46965 * 54.93517 * 1 2 3 25 25 H 1.09005 * 109.46597 * 174.92401 * 1 2 3 26 26 H 1.09001 * 109.47346 * 240.00215 * 2 1 3 27 27 H 1.08995 * 109.47281 * 119.99473 * 2 1 3 28 28 H 0.97000 * 119.99785 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.97305 * 0.02562 * 16 15 13 30 30 H 1.07998 * 119.93878 * 179.69979 * 17 16 15 31 31 H 1.07995 * 119.97701 * 180.29255 * 18 17 16 32 32 H 1.07991 * 120.03511 * 179.75051 * 19 18 17 33 33 H 1.09004 * 109.47130 * 180.02562 * 22 21 20 34 34 H 1.09002 * 109.47159 * 299.99554 * 22 21 20 35 35 H 1.09004 * 109.47617 * 60.00123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4432 0.0614 5 6 1.4694 2.1770 1.1858 6 1 0.8555 3.0526 1.0344 7 6 1.7311 1.7312 2.4640 8 7 2.4783 0.6647 2.6483 9 14 1.0245 2.6421 3.9338 10 1 -0.4581 2.6417 3.8503 11 1 1.4505 1.9669 5.1861 12 1 1.5200 4.0419 3.9337 13 16 1.5202 2.2677 -1.5296 14 8 2.2572 3.4716 -1.6923 15 6 2.1815 1.2251 -2.7868 16 6 1.3826 0.2680 -3.3824 17 6 1.9026 -0.5543 -4.3645 18 6 3.2198 -0.4138 -4.7613 19 6 4.0227 0.5414 -4.1689 20 6 3.5047 1.3642 -3.1790 21 8 4.2923 2.3052 -2.5949 22 6 5.6444 2.3922 -3.0491 23 1 -0.3634 0.4331 0.9319 24 1 -0.3633 0.5904 -0.8411 25 1 -0.3633 -1.0237 -0.0909 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 2.6627 0.3513 3.5476 29 1 0.3522 0.1593 -3.0774 30 1 1.2779 -1.3051 -4.8254 31 1 3.6225 -1.0543 -5.5320 32 1 5.0524 0.6481 -4.4762 33 1 6.1614 3.1807 -2.5022 34 1 6.1476 1.4408 -2.8764 35 1 5.6558 2.6212 -4.1148 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084257190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:27 Heat of formation + Delta-G solvation = -75.759517 kcal Electronic energy + Delta-G solvation = -18936.983728 eV Core-core repulsion = 16026.195984 eV Total energy + Delta-G solvation = -2910.787744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01727 -38.30701 -36.69946 -36.22962 -33.31462 -32.03279 -30.99677 -28.92290 -28.24672 -25.73433 -23.76436 -23.04112 -21.96164 -19.60879 -18.52130 -17.90568 -17.19470 -17.07008 -16.72497 -16.55882 -15.53707 -15.44201 -15.26429 -15.03733 -14.60066 -14.22560 -14.01517 -13.65042 -13.22285 -13.03813 -12.86086 -12.76555 -12.45834 -12.33477 -12.22479 -12.10710 -12.04805 -11.60291 -11.49303 -11.00809 -10.59700 -10.47392 -10.02882 -9.24918 -8.88132 -8.08892 -6.27996 0.12309 0.51027 1.32995 1.42303 1.45172 1.52293 2.21243 2.42078 2.43843 2.80148 3.15015 3.38112 3.89536 3.99805 4.16253 4.18069 4.36531 4.49178 4.52854 4.70785 4.75747 4.79328 4.84123 4.95688 5.27856 5.30458 5.39646 5.41787 5.53494 5.54155 5.66528 5.89248 5.94285 6.03654 6.26208 6.39726 6.80039 7.38160 8.93966 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024870 B = 0.006998 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.598422 B = 4000.270003 C = 4439.936596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 C -0.234 4.234 4 H -0.017 1.017 5 C -0.518 4.518 6 H 0.061 0.939 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.249 1.249 11 H -0.283 1.283 12 H -0.283 1.283 13 S 1.340 4.660 14 O -0.924 6.924 15 C -0.507 4.507 16 C -0.009 4.009 17 C -0.172 4.172 18 C -0.052 4.052 19 C -0.240 4.240 20 C 0.145 3.855 21 O -0.337 6.337 22 C 0.019 3.981 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.261 0.739 29 H 0.174 0.826 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -5.907 -14.406 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.353 4.353 4 H 0.001 0.999 5 C -0.557 4.557 6 H 0.079 0.921 7 C -0.175 4.175 8 N -0.548 5.548 9 Si 0.774 3.226 10 H -0.173 1.173 11 H -0.209 1.209 12 H -0.209 1.209 13 S 1.543 4.457 14 O -0.920 6.920 15 C -0.605 4.605 16 C -0.027 4.027 17 C -0.191 4.191 18 C -0.070 4.070 19 C -0.260 4.260 20 C 0.098 3.902 21 O -0.250 6.250 22 C -0.075 4.075 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.192 0.808 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.054 -5.001 -14.260 15.646 hybrid contribution 3.096 0.359 1.275 3.368 sum -0.957 -4.642 -12.985 13.823 Atomic orbital electron populations 1.21684 0.93987 1.01234 1.02284 1.21059 0.97468 0.94111 0.99992 1.24900 0.98750 1.02951 1.08710 0.99905 1.20693 1.32511 1.11827 0.90667 0.92130 1.25663 0.95045 0.95526 1.01289 1.70046 1.38155 1.24468 1.22154 0.85742 0.80289 0.78192 0.78376 1.17278 1.20857 1.20888 1.67904 1.14632 0.79378 0.83829 1.92884 1.75513 1.39524 1.84092 1.27414 0.98805 1.16015 1.18222 1.21244 1.00078 0.89346 0.92052 1.21636 0.96261 1.01727 0.99489 1.21527 0.93875 0.94564 0.97036 1.21548 1.02348 1.01115 1.00983 1.19378 0.90870 0.87995 0.91992 1.86392 1.24420 1.52979 1.61237 1.23276 0.79652 1.03285 1.01308 0.93586 0.90864 0.91831 0.94314 0.92679 0.92988 0.80844 0.81414 0.82125 0.84137 0.88191 0.91635 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.40 71.98 0.68 -4.03 16 2 C -0.09 -3.89 5.31 30.60 0.16 -3.72 16 3 C -0.23 -12.18 2.54 29.85 0.08 -12.10 16 4 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 5 C -0.52 -28.82 7.25 25.60 0.19 -28.64 16 6 H 0.06 3.27 7.71 -2.91 -0.02 3.25 16 7 C 0.03 1.43 5.30 84.65 0.45 1.88 16 8 N -0.91 -53.30 11.35 21.45 0.24 -53.06 16 9 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 10 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 S 1.34 58.28 11.47 -56.49 -0.65 57.63 16 14 O -0.92 -51.67 15.91 -128.20 -2.04 -53.71 16 15 C -0.51 -19.05 4.63 22.37 0.10 -18.94 16 16 C -0.01 -0.23 9.02 22.25 0.20 -0.03 16 17 C -0.17 -3.70 10.04 22.28 0.22 -3.47 16 18 C -0.05 -1.19 10.04 22.25 0.22 -0.96 16 19 C -0.24 -7.16 9.04 22.37 0.20 -6.96 16 20 C 0.14 5.73 6.60 22.51 0.15 5.88 16 21 O -0.34 -15.26 8.38 -71.67 -0.60 -15.86 16 22 C 0.02 0.61 9.81 113.37 1.11 1.72 16 23 H 0.04 1.81 7.32 -2.39 -0.02 1.80 16 24 H 0.07 2.00 6.85 -2.39 -0.02 1.98 16 25 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.04 1.56 6.53 -2.39 -0.02 1.54 16 27 H 0.05 2.89 6.17 -2.39 -0.01 2.87 16 28 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.17 3.18 8.01 -2.91 -0.02 3.16 16 30 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.14 3.48 6.30 -2.91 -0.02 3.46 16 33 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 34 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 35 H 0.07 1.93 7.66 -2.38 -0.02 1.91 16 Total: -1.00 -83.27 300.02 3.83 -79.44 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.08 Total: 9.27 kcal Atomic # 6 Polarization: -73.14 SS G_CDS: 3.76 Total: -69.37 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.24 Total: -53.06 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -2.64 Total: -69.56 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 58.28 SS G_CDS: -0.65 Total: 57.63 kcal Total: -83.27 3.83 -79.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084257190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.681 kcal (2) G-P(sol) polarization free energy of solvation -83.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds