Wall clock time and date at job start Mon Mar 30 2020 08:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.46915 * 2 1 4 4 H 1.08999 * 109.47277 * 54.49491 * 3 2 1 5 5 C 1.50704 * 109.46985 * 174.49481 * 3 2 1 6 6 H 1.08001 * 119.99701 * 119.99695 * 5 3 2 7 7 C 1.37866 * 120.00192 * 299.99700 * 5 3 2 8 8 N 1.31517 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00329 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47052 * 89.99608 * 9 7 5 11 11 H 1.48497 * 109.47240 * 209.99978 * 9 7 5 12 12 H 1.48500 * 109.46698 * 329.99981 * 9 7 5 13 13 S 1.81404 * 109.47020 * 294.49325 * 3 2 1 14 14 O 1.42107 * 109.46951 * 292.22523 * 13 3 2 15 15 C 1.76200 * 102.99945 * 183.16977 * 13 3 2 16 16 C 1.38166 * 120.03248 * 95.65546 * 15 13 3 17 17 C 1.38243 * 120.05619 * 180.29689 * 16 15 13 18 18 C 1.38290 * 120.11090 * 359.67499 * 17 16 15 19 19 C 1.38121 * 120.05610 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.02338 * 275.32903 * 15 13 3 21 21 O 1.35901 * 120.05805 * 359.97438 * 20 15 13 22 22 C 1.42906 * 116.99802 * 179.72492 * 21 20 15 23 23 H 1.09004 * 109.47247 * 55.41854 * 1 2 3 24 24 H 1.09000 * 109.47184 * 175.41593 * 1 2 3 25 25 H 1.08998 * 109.47958 * 295.41425 * 1 2 3 26 26 H 1.08996 * 109.47828 * 239.99548 * 2 1 3 27 27 H 1.09004 * 109.46931 * 119.99446 * 2 1 3 28 28 H 0.97002 * 119.99907 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.97057 * 359.97438 * 16 15 13 30 30 H 1.07996 * 119.94520 * 179.69835 * 17 16 15 31 31 H 1.07996 * 119.96880 * 180.02562 * 18 17 16 32 32 H 1.08000 * 120.03231 * 180.02562 * 19 18 17 33 33 H 1.09003 * 109.47098 * 300.00310 * 22 21 20 34 34 H 1.08995 * 109.47209 * 60.00680 * 22 21 20 35 35 H 1.09007 * 109.46559 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5983 1.9840 0.8366 5 6 3.5407 1.4447 0.1363 6 1 4.1524 1.8870 -0.6361 7 6 4.1329 0.8822 1.2470 8 7 3.3880 0.3441 2.1879 9 14 5.9932 0.8855 1.4163 10 1 6.4241 2.1207 2.1193 11 1 6.4214 -0.3031 2.1966 12 1 6.6130 0.8419 0.0676 13 16 1.5729 2.2489 -1.5564 14 8 2.2898 1.6562 -2.6307 15 6 2.3143 3.8412 -1.4158 16 6 3.5531 4.0793 -1.9794 17 6 4.1380 5.3265 -1.8641 18 6 3.4822 6.3408 -1.1906 19 6 2.2409 6.1096 -0.6308 20 6 1.6516 4.8586 -0.7452 21 8 0.4299 4.6290 -0.1962 22 6 -0.1910 5.7212 0.4848 23 1 -0.3634 0.5833 -0.8461 24 1 -0.3633 -1.0244 -0.0821 25 1 -0.3635 0.4410 0.9282 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.8047 -0.0521 2.9691 29 1 4.0673 3.2888 -2.5058 30 1 5.1086 5.5093 -2.3011 31 1 3.9411 7.3144 -1.1023 32 1 1.7288 6.9021 -0.1053 33 1 0.4447 6.0439 1.3094 34 1 -0.3331 6.5489 -0.2100 35 1 -1.1582 5.4036 0.8747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084257194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:30 Heat of formation + Delta-G solvation = -55.409011 kcal Electronic energy + Delta-G solvation = -18910.804976 eV Core-core repulsion = 16000.899695 eV Total energy + Delta-G solvation = -2909.905280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70866 -37.01816 -34.64286 -34.36748 -31.57327 -30.79339 -29.71727 -27.48502 -27.03140 -23.19534 -22.52644 -21.74592 -20.30295 -18.16413 -16.75785 -16.46505 -15.73076 -15.65195 -15.52526 -14.81664 -14.18651 -13.89425 -13.69148 -13.37947 -12.96411 -12.75516 -12.25039 -12.13427 -11.79179 -11.39164 -11.31883 -11.19191 -10.94062 -10.88229 -10.81355 -10.62574 -10.37271 -10.04992 -9.74609 -9.20332 -8.82036 -8.67493 -8.37068 -7.94120 -7.08580 -5.98612 -4.10821 1.50967 1.82738 3.01548 3.28180 3.34355 3.40603 3.50696 3.84368 4.24692 4.42140 4.93930 5.05635 5.24458 5.27229 5.30818 5.31870 5.51439 5.61200 5.76984 6.12399 6.14822 6.20263 6.22317 6.40138 6.53506 6.68531 6.81633 6.85595 7.01295 7.09302 7.13917 7.54970 7.62416 7.79262 7.89068 8.26796 8.89830 9.52998 11.02506 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.009275 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.157669 B = 3018.111516 C = 3705.598199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.227 4.227 4 H 0.077 0.923 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.072 3.928 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 S 1.272 4.728 14 O -0.876 6.876 15 C -0.444 4.444 16 C -0.007 4.007 17 C -0.177 4.177 18 C -0.064 4.064 19 C -0.228 4.228 20 C 0.191 3.809 21 O -0.309 6.309 22 C 0.027 3.973 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.260 0.740 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 10.930 -2.479 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.347 4.347 4 H 0.095 0.905 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 S 1.473 4.527 14 O -0.871 6.871 15 C -0.540 4.540 16 C -0.025 4.025 17 C -0.196 4.196 18 C -0.082 4.082 19 C -0.248 4.248 20 C 0.144 3.856 21 O -0.222 6.222 22 C -0.068 4.068 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.865 10.334 -3.096 13.963 hybrid contribution 3.502 0.340 0.821 3.613 sum -5.363 10.674 -2.275 12.160 Atomic orbital electron populations 1.21969 0.98575 1.00094 1.00634 1.21345 0.91817 0.97813 1.03562 1.24792 1.02031 1.00114 1.07792 0.90486 1.20871 0.89581 1.38652 1.05521 0.92454 1.24891 0.97775 0.94829 0.95623 1.69851 1.34678 1.38377 1.09224 0.86689 0.86190 0.77583 0.78290 1.20614 1.21014 1.19814 1.68790 1.15015 0.82401 0.86482 1.92943 1.75126 1.73771 1.45290 1.26992 1.03244 1.15827 1.07897 1.20918 0.92095 0.96417 0.93111 1.21074 1.00746 0.94053 1.03753 1.20906 0.93845 0.98440 0.95015 1.21146 0.98755 0.96767 1.08085 1.18351 0.84117 0.92463 0.90656 1.86075 1.29525 1.38647 1.67905 1.23061 0.98196 0.89462 0.96065 0.94284 0.93900 0.92617 0.94396 0.87778 0.92990 0.85043 0.86403 0.86320 0.85694 0.92687 0.92895 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.81 37.15 0.36 -2.47 16 2 C -0.11 -2.50 5.24 -26.73 -0.14 -2.64 16 3 C -0.23 -5.59 2.23 -27.88 -0.06 -5.65 16 4 H 0.08 1.94 8.14 -51.92 -0.42 1.51 16 5 C -0.51 -14.38 8.01 -34.44 -0.28 -14.66 16 6 H 0.06 1.68 6.46 -52.49 -0.34 1.35 16 7 C 0.07 2.03 5.29 -17.82 -0.09 1.94 16 8 N -0.88 -25.15 11.29 55.43 0.63 -24.52 16 9 Si 0.88 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 13 S 1.27 27.12 11.30 -107.50 -1.22 25.91 16 14 O -0.88 -22.82 16.64 -35.23 -0.59 -23.40 16 15 C -0.44 -9.13 5.09 -39.43 -0.20 -9.33 16 16 C -0.01 -0.14 8.42 -39.61 -0.33 -0.47 16 17 C -0.18 -3.07 10.04 -39.56 -0.40 -3.47 16 18 C -0.06 -0.97 10.04 -39.60 -0.40 -1.37 16 19 C -0.23 -3.47 9.04 -39.43 -0.36 -3.83 16 20 C 0.19 3.35 6.67 -39.21 -0.26 3.09 16 21 O -0.31 -4.66 9.84 -19.43 -0.19 -4.86 16 22 C 0.03 0.28 9.81 101.05 0.99 1.27 16 23 H 0.04 0.61 7.01 -51.93 -0.36 0.25 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.10 2.74 5.94 -51.93 -0.31 2.43 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.13 2.96 7.24 -52.49 -0.38 2.58 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.47 6.30 -52.49 -0.33 1.14 16 33 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -34.61 303.05 -7.60 -42.21 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.61 Total: 0.46 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: -1.16 Total: -37.58 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.78 Total: -28.26 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 27.12 SS G_CDS: -1.22 Total: 25.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.61 -7.60 -42.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084257194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.202 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds