Wall clock time and date at job start Mon Mar 30 2020 08:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47365 * 2 1 4 4 H 1.09002 * 109.47462 * 175.73583 * 3 2 1 5 5 C 1.50704 * 109.47023 * 55.74066 * 3 2 1 6 6 H 1.07992 * 120.00232 * 240.00357 * 5 3 2 7 7 C 1.37877 * 119.99781 * 60.00125 * 5 3 2 8 8 N 1.31511 * 120.00360 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47035 * 89.99968 * 9 7 5 11 11 H 1.48493 * 109.47246 * 210.00048 * 9 7 5 12 12 H 1.48502 * 109.47008 * 330.00044 * 9 7 5 13 13 S 1.81394 * 109.47141 * 295.74350 * 3 2 1 14 14 O 1.42103 * 109.47125 * 52.57711 * 13 3 2 15 15 C 1.76202 * 102.99787 * 303.51999 * 13 3 2 16 16 C 1.38165 * 120.02598 * 95.58160 * 15 13 3 17 17 C 1.38239 * 120.05753 * 179.97438 * 16 15 13 18 18 C 1.38292 * 120.11005 * 0.02562 * 17 16 15 19 19 C 1.38117 * 120.05459 * 0.02562 * 18 17 16 20 20 C 1.38706 * 120.02999 * 275.30355 * 15 13 3 21 21 O 1.35902 * 120.05227 * 359.97438 * 20 15 13 22 22 C 1.42907 * 116.99651 * 179.97438 * 21 20 15 23 23 H 1.09003 * 109.47625 * 305.98722 * 1 2 3 24 24 H 1.09003 * 109.46774 * 65.98934 * 1 2 3 25 25 H 1.09002 * 109.47528 * 185.98231 * 1 2 3 26 26 H 1.09000 * 109.47291 * 239.99670 * 2 1 3 27 27 H 1.09004 * 109.47239 * 120.00212 * 2 1 3 28 28 H 0.96999 * 120.00666 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.97132 * 359.97438 * 16 15 13 30 30 H 1.08003 * 119.94781 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.97444 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.03028 * 179.97438 * 19 18 17 33 33 H 1.09003 * 109.47081 * 60.00329 * 22 21 20 34 34 H 1.09006 * 109.46859 * 180.02562 * 22 21 20 35 35 H 1.08996 * 109.47147 * 300.00196 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 0.0764 5 6 1.4533 2.1827 1.1743 6 1 0.8417 3.0575 1.0104 7 6 1.6976 1.7430 2.4581 8 7 2.4420 0.6775 2.6579 9 14 0.9710 2.6610 3.9139 10 1 -0.3629 2.0956 4.2398 11 1 1.8694 2.5181 5.0875 12 1 0.8289 4.0990 3.5714 13 16 1.5412 2.2602 -1.5405 14 8 0.1404 2.1088 -1.7250 15 6 2.2204 1.2120 -2.7834 16 6 1.4379 0.2336 -3.3660 17 6 1.9699 -0.5887 -4.3415 18 6 3.2863 -0.4348 -4.7365 19 6 4.0729 0.5411 -4.1564 20 6 3.5393 1.3722 -3.1818 21 8 4.3091 2.3379 -2.6147 22 6 5.6583 2.4449 -3.0736 23 1 -0.3634 0.6039 0.8315 24 1 -0.3633 0.4182 -0.9388 25 1 -0.3634 -1.0221 0.1071 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.6141 0.3683 3.5610 29 1 0.4097 0.1112 -3.0589 30 1 1.3568 -1.3532 -4.7955 31 1 3.6998 -1.0787 -5.4986 32 1 5.1011 0.6606 -4.4648 33 1 5.6626 2.6572 -4.1427 34 1 6.1605 3.2522 -2.5404 35 1 6.1809 1.5066 -2.8874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084257196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:33 Heat of formation + Delta-G solvation = -49.577753 kcal Electronic energy + Delta-G solvation = -18929.294699 eV Core-core repulsion = 16019.642281 eV Total energy + Delta-G solvation = -2909.652418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.82245 -37.15218 -35.00080 -34.25752 -31.37382 -30.74278 -29.84036 -27.15341 -26.91761 -23.80264 -22.50531 -21.86529 -20.07079 -18.33258 -16.98487 -16.17278 -15.85343 -15.59356 -15.49593 -14.94172 -14.20580 -14.00270 -13.79244 -13.50089 -13.19394 -12.50171 -12.17464 -11.88756 -11.75241 -11.51581 -11.45220 -11.04902 -10.97696 -10.89485 -10.75209 -10.46307 -10.28804 -9.95633 -9.62581 -9.05886 -8.86244 -8.76416 -8.38669 -8.06253 -6.98336 -6.01117 -4.13028 1.35982 1.67876 2.89927 3.29904 3.36502 3.40100 3.44159 3.79655 4.17878 4.40491 4.87104 4.95772 5.16421 5.19757 5.24175 5.29209 5.39652 5.57536 5.64028 5.96957 6.07141 6.41079 6.48783 6.53922 6.59721 6.70025 6.74423 7.00231 7.24142 7.26570 7.44141 7.52422 7.71835 7.76540 7.93731 8.23810 8.86264 9.49516 11.01775 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.006973 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.552370 B = 4014.346599 C = 4458.497405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.221 4.221 4 H 0.075 0.925 5 C -0.500 4.500 6 H 0.061 0.939 7 C 0.074 3.926 8 N -0.880 5.880 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.270 1.270 13 S 1.281 4.719 14 O -0.866 6.866 15 C -0.465 4.465 16 C -0.015 4.015 17 C -0.178 4.178 18 C -0.063 4.063 19 C -0.228 4.228 20 C 0.193 3.807 21 O -0.305 6.305 22 C 0.027 3.973 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 1.622 -12.337 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.342 4.342 4 H 0.093 0.907 5 C -0.540 4.540 6 H 0.079 0.921 7 C -0.130 4.130 8 N -0.517 5.517 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.194 1.194 13 S 1.482 4.518 14 O -0.862 6.862 15 C -0.560 4.560 16 C -0.034 4.034 17 C -0.197 4.197 18 C -0.082 4.082 19 C -0.248 4.248 20 C 0.146 3.854 21 O -0.218 6.218 22 C -0.068 4.068 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.627 2.492 -12.233 14.134 hybrid contribution -0.679 -2.147 0.799 2.389 sum 5.948 0.345 -11.434 12.894 Atomic orbital electron populations 1.22045 0.97226 0.98487 1.03838 1.21419 0.95073 0.97575 1.00510 1.24770 1.03172 1.00200 1.06049 0.90673 1.20374 1.32105 1.12024 0.89458 0.92090 1.24867 0.94692 0.94835 0.98570 1.69893 1.37399 1.23165 1.21277 0.86589 0.79047 0.80479 0.81974 1.20625 1.21102 1.19448 1.69124 0.90261 1.06647 0.85755 1.92891 1.27510 1.82339 1.83472 1.27427 0.98519 1.12807 1.17221 1.20988 0.99380 0.90677 0.92339 1.21099 0.96020 1.01867 1.00751 1.20938 0.93737 0.95969 0.97507 1.21206 1.00870 1.00656 1.02033 1.18399 0.89468 0.87166 0.90416 1.86132 1.23638 1.50700 1.61289 1.23087 0.80879 1.02854 1.00022 0.91734 0.91246 0.96452 0.96670 0.89393 0.92915 0.84962 0.86338 0.86224 0.85572 0.92843 0.87829 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.18 37.15 0.34 -3.64 16 2 C -0.11 -2.69 5.30 -26.74 -0.14 -2.83 16 3 C -0.22 -5.42 2.56 -27.88 -0.07 -5.49 16 4 H 0.08 1.89 8.14 -51.92 -0.42 1.47 16 5 C -0.50 -13.40 7.02 -34.44 -0.24 -13.64 16 6 H 0.06 1.62 7.71 -52.49 -0.40 1.21 16 7 C 0.07 2.02 5.30 -17.82 -0.09 1.93 16 8 N -0.88 -24.74 11.36 55.43 0.63 -24.11 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 S 1.28 26.63 12.50 -107.50 -1.34 25.29 16 14 O -0.87 -21.23 13.53 -35.23 -0.48 -21.71 16 15 C -0.47 -8.77 4.72 -39.44 -0.19 -8.96 16 16 C -0.01 -0.28 8.59 -39.61 -0.34 -0.62 16 17 C -0.18 -2.74 10.04 -39.56 -0.40 -3.14 16 18 C -0.06 -0.86 10.04 -39.61 -0.40 -1.26 16 19 C -0.23 -3.16 9.04 -39.43 -0.36 -3.52 16 20 C 0.19 3.14 6.67 -39.22 -0.26 2.88 16 21 O -0.31 -4.47 9.84 -19.43 -0.19 -4.66 16 22 C 0.03 0.26 9.81 101.05 0.99 1.25 16 23 H 0.06 1.74 6.87 -51.93 -0.36 1.39 16 24 H 0.07 1.75 4.78 -51.93 -0.25 1.50 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.01 0.35 6.40 -51.93 -0.33 0.02 16 27 H 0.09 2.44 6.19 -51.93 -0.32 2.11 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.13 2.63 6.87 -52.49 -0.36 2.27 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.34 6.30 -52.48 -0.33 1.01 16 33 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -32.54 295.68 -7.50 -40.04 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.40 Total: 1.66 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: -1.16 Total: -37.03 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.63 Total: -24.11 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.67 Total: -26.37 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 26.63 SS G_CDS: -1.34 Total: 25.29 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.54 -7.50 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084257196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.538 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds