Wall clock time and date at job start Mon Mar 30 2020 08:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47365 * 2 1 4 4 H 1.09002 * 109.47462 * 175.73583 * 3 2 1 5 5 C 1.50704 * 109.47023 * 55.74066 * 3 2 1 6 6 H 1.07992 * 120.00232 * 240.00357 * 5 3 2 7 7 C 1.37877 * 119.99781 * 60.00125 * 5 3 2 8 8 N 1.31511 * 120.00360 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47035 * 89.99968 * 9 7 5 11 11 H 1.48493 * 109.47246 * 210.00048 * 9 7 5 12 12 H 1.48502 * 109.47008 * 330.00044 * 9 7 5 13 13 S 1.81394 * 109.47141 * 295.74350 * 3 2 1 14 14 O 1.42103 * 109.47125 * 52.57711 * 13 3 2 15 15 C 1.76202 * 102.99787 * 303.51999 * 13 3 2 16 16 C 1.38165 * 120.02598 * 95.58160 * 15 13 3 17 17 C 1.38239 * 120.05753 * 179.97438 * 16 15 13 18 18 C 1.38292 * 120.11005 * 0.02562 * 17 16 15 19 19 C 1.38117 * 120.05459 * 0.02562 * 18 17 16 20 20 C 1.38706 * 120.02999 * 275.30355 * 15 13 3 21 21 O 1.35902 * 120.05227 * 359.97438 * 20 15 13 22 22 C 1.42907 * 116.99651 * 179.97438 * 21 20 15 23 23 H 1.09003 * 109.47625 * 305.98722 * 1 2 3 24 24 H 1.09003 * 109.46774 * 65.98934 * 1 2 3 25 25 H 1.09002 * 109.47528 * 185.98231 * 1 2 3 26 26 H 1.09000 * 109.47291 * 239.99670 * 2 1 3 27 27 H 1.09004 * 109.47239 * 120.00212 * 2 1 3 28 28 H 0.96999 * 120.00666 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.97132 * 359.97438 * 16 15 13 30 30 H 1.08003 * 119.94781 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.97444 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.03028 * 179.97438 * 19 18 17 33 33 H 1.09003 * 109.47081 * 60.00329 * 22 21 20 34 34 H 1.09006 * 109.46859 * 180.02562 * 22 21 20 35 35 H 1.08996 * 109.47147 * 300.00196 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 0.0764 5 6 1.4533 2.1827 1.1743 6 1 0.8417 3.0575 1.0104 7 6 1.6976 1.7430 2.4581 8 7 2.4420 0.6775 2.6579 9 14 0.9710 2.6610 3.9139 10 1 -0.3629 2.0956 4.2398 11 1 1.8694 2.5181 5.0875 12 1 0.8289 4.0990 3.5714 13 16 1.5412 2.2602 -1.5405 14 8 0.1404 2.1088 -1.7250 15 6 2.2204 1.2120 -2.7834 16 6 1.4379 0.2336 -3.3660 17 6 1.9699 -0.5887 -4.3415 18 6 3.2863 -0.4348 -4.7365 19 6 4.0729 0.5411 -4.1564 20 6 3.5393 1.3722 -3.1818 21 8 4.3091 2.3379 -2.6147 22 6 5.6583 2.4449 -3.0736 23 1 -0.3634 0.6039 0.8315 24 1 -0.3633 0.4182 -0.9388 25 1 -0.3634 -1.0221 0.1071 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.6141 0.3683 3.5610 29 1 0.4097 0.1112 -3.0589 30 1 1.3568 -1.3532 -4.7955 31 1 3.6998 -1.0787 -5.4986 32 1 5.1011 0.6606 -4.4648 33 1 5.6626 2.6572 -4.1427 34 1 6.1605 3.2522 -2.5404 35 1 6.1809 1.5066 -2.8874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084257196.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:33 Heat of formation + Delta-G solvation = -70.627203 kcal Electronic energy + Delta-G solvation = -18930.207472 eV Core-core repulsion = 16019.642281 eV Total energy + Delta-G solvation = -2910.565191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95311 -38.30186 -36.92041 -36.16354 -33.34660 -32.05549 -30.99025 -28.98636 -27.99552 -25.81397 -23.77935 -23.02423 -22.09048 -19.59323 -18.45721 -18.06898 -17.14815 -17.01198 -16.78863 -16.50101 -15.82445 -15.41532 -15.25965 -15.08755 -14.53320 -14.13633 -13.75893 -13.59966 -13.33628 -12.95459 -12.87376 -12.74441 -12.56373 -12.51655 -12.30489 -11.97244 -11.96160 -11.88037 -11.56863 -11.07362 -10.66720 -10.39608 -10.09536 -9.25883 -8.76023 -8.06475 -6.25423 0.07793 0.47983 1.32393 1.40731 1.43739 1.53449 2.26264 2.41380 2.44455 2.80663 3.14058 3.31018 3.93914 4.02314 4.27229 4.42839 4.46439 4.54454 4.55114 4.56887 4.69852 4.75825 4.87188 4.92458 5.16710 5.22220 5.27591 5.35853 5.40680 5.50382 5.61441 5.68028 5.84030 5.85762 6.18656 6.46012 6.80555 7.39584 8.94513 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.006973 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.552370 B = 4014.346599 C = 4458.497405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.236 4.236 4 H 0.062 0.938 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.258 1.258 13 S 1.331 4.669 14 O -0.909 6.909 15 C -0.498 4.498 16 C -0.040 4.040 17 C -0.184 4.184 18 C -0.049 4.049 19 C -0.223 4.223 20 C 0.191 3.809 21 O -0.325 6.325 22 C 0.013 3.987 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.261 0.739 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.949 1.541 -14.290 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.356 4.356 4 H 0.080 0.920 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.771 3.229 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.182 1.182 13 S 1.534 4.466 14 O -0.905 6.905 15 C -0.596 4.596 16 C -0.059 4.059 17 C -0.203 4.203 18 C -0.067 4.067 19 C -0.242 4.242 20 C 0.143 3.857 21 O -0.237 6.237 22 C -0.081 4.081 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.453 2.439 -14.150 16.662 hybrid contribution -1.105 -2.175 1.203 2.720 sum 7.348 0.264 -12.947 14.889 Atomic orbital electron populations 1.21932 0.97325 0.98804 1.02585 1.21288 0.94842 0.98121 0.99483 1.24849 1.02229 0.99921 1.08553 0.91983 1.20666 1.31816 1.12046 0.90672 0.92527 1.25588 0.95094 0.95591 1.01008 1.70009 1.38528 1.24338 1.21659 0.85739 0.77989 0.79940 0.79245 1.21184 1.20247 1.18192 1.68519 0.88303 1.05931 0.83810 1.92790 1.30229 1.83520 1.83978 1.26940 1.00484 1.14326 1.17818 1.20922 0.98479 0.92209 0.94282 1.21387 0.97437 1.01622 0.99899 1.21483 0.92572 0.95477 0.97119 1.21681 1.02698 0.99391 1.00457 1.18518 0.88688 0.87764 0.90714 1.86114 1.25772 1.50129 1.61733 1.23503 0.78451 1.04233 1.01932 0.94224 0.91394 0.95022 0.95626 0.92214 0.92972 0.87627 0.84118 0.81815 0.81626 0.90379 0.85918 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.72 9.18 71.98 0.66 -7.06 16 2 C -0.10 -5.11 5.30 30.59 0.16 -4.95 16 3 C -0.24 -11.95 2.56 29.85 0.08 -11.88 16 4 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 5 C -0.51 -28.26 7.02 25.60 0.18 -28.08 16 6 H 0.06 3.09 7.71 -2.91 -0.02 3.07 16 7 C 0.03 1.57 5.30 84.66 0.45 2.02 16 8 N -0.91 -52.28 11.36 21.45 0.24 -52.04 16 9 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 S 1.33 56.81 12.50 -56.49 -0.71 56.10 16 14 O -0.91 -46.09 13.53 -148.98 -2.02 -48.11 16 15 C -0.50 -18.67 4.72 22.36 0.11 -18.56 16 16 C -0.04 -1.47 8.59 22.25 0.19 -1.28 16 17 C -0.18 -5.22 10.04 22.28 0.22 -5.00 16 18 C -0.05 -1.10 10.04 22.25 0.22 -0.88 16 19 C -0.22 -5.24 9.04 22.36 0.20 -5.04 16 20 C 0.19 5.85 6.67 22.51 0.15 6.00 16 21 O -0.32 -8.91 9.84 -92.45 -0.91 -9.82 16 22 C 0.01 0.20 9.81 113.37 1.11 1.31 16 23 H 0.04 2.20 6.87 -2.39 -0.02 2.19 16 24 H 0.07 3.55 4.78 -2.39 -0.01 3.54 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.03 1.24 6.40 -2.39 -0.02 1.22 16 27 H 0.06 3.42 6.19 -2.38 -0.01 3.41 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.11 4.37 6.87 -2.91 -0.02 4.35 16 30 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 31 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.17 2.54 6.30 -2.91 -0.02 2.53 16 33 H 0.08 0.88 7.67 -2.39 -0.02 0.86 16 34 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.06 0.92 7.65 -2.39 -0.02 0.90 16 Total: -1.00 -72.64 295.68 3.47 -69.17 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.09 Total: 12.27 kcal Atomic # 6 Polarization: -77.13 SS G_CDS: 3.74 Total: -73.40 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.24 Total: -52.04 kcal Atomic # 8 Polarization: -55.00 SS G_CDS: -2.92 Total: -57.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 56.81 SS G_CDS: -0.71 Total: 56.10 kcal Total: -72.64 3.47 -69.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084257196.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.453 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds