Wall clock time and date at job start Mon Mar 30 2020 08:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47356 * 2 1 4 4 H 1.08993 * 109.47293 * 185.95948 * 3 2 1 5 5 C 1.50706 * 109.47330 * 305.95809 * 3 2 1 6 6 H 1.07994 * 119.99936 * 119.99537 * 5 3 2 7 7 C 1.37881 * 120.00079 * 300.00179 * 5 3 2 8 8 N 1.31511 * 119.99926 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99796 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46890 * 90.00354 * 9 7 5 11 11 H 1.48497 * 109.46906 * 210.00184 * 9 7 5 12 12 H 1.48498 * 109.47051 * 330.00656 * 9 7 5 13 13 S 1.81399 * 109.47101 * 65.95780 * 3 2 1 14 14 O 1.42102 * 109.47170 * 305.43647 * 13 3 2 15 15 C 1.76197 * 102.99988 * 54.49057 * 13 3 2 16 16 C 1.38267 * 119.93872 * 84.55796 * 15 13 3 17 17 C 1.38154 * 120.05170 * 179.70148 * 16 15 13 18 18 C 1.38729 * 119.94344 * 0.28051 * 17 16 15 19 19 O 1.35903 * 120.05290 * 180.02562 * 18 17 16 20 20 C 1.42905 * 116.99747 * 179.97438 * 19 18 17 21 21 C 1.38737 * 119.89044 * 359.97438 * 18 17 16 22 22 C 1.38140 * 119.94207 * 0.02562 * 21 18 17 23 23 H 1.09001 * 109.47145 * 52.27518 * 1 2 3 24 24 H 1.08997 * 109.47298 * 172.27480 * 1 2 3 25 25 H 1.09002 * 109.47016 * 292.27589 * 1 2 3 26 26 H 1.09008 * 109.46645 * 240.00014 * 2 1 3 27 27 H 1.08990 * 109.47049 * 120.00640 * 2 1 3 28 28 H 0.96996 * 119.99759 * 179.97438 * 8 7 5 29 29 H 1.08002 * 119.97954 * 359.97438 * 16 15 13 30 30 H 1.07998 * 120.02504 * 180.29598 * 17 16 15 31 31 H 1.08999 * 109.46744 * 60.00199 * 20 19 18 32 32 H 1.09001 * 109.46980 * 180.02562 * 20 19 18 33 33 H 1.09006 * 109.46956 * 299.99982 * 20 19 18 34 34 H 1.07993 * 120.02609 * 180.02562 * 21 18 17 35 35 H 1.08001 * 119.97168 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1247 1.4443 -0.1067 5 6 1.4209 2.1942 -1.1501 6 1 0.8142 3.0672 -0.9604 7 6 1.6290 1.7673 -2.4445 8 7 1.0883 2.4231 -3.4481 9 14 2.6789 0.2575 -2.7727 10 1 1.8183 -0.9527 -2.7756 11 1 3.3444 0.3949 -4.0931 12 1 3.7085 0.1302 -1.7102 13 16 1.5847 2.2448 1.5619 14 8 0.1823 2.1313 1.7615 15 6 2.2474 1.1534 2.7761 16 6 3.5720 1.2663 3.1559 17 6 4.0924 0.4158 4.1122 18 6 3.2863 -0.5559 4.6872 19 8 3.7957 -1.3934 5.6285 20 6 2.9077 -2.3691 6.1776 21 6 1.9588 -0.6705 4.3004 22 6 1.4433 0.1824 3.3438 23 1 -0.3633 0.6288 -0.8128 24 1 -0.3634 -1.0183 -0.1381 25 1 -0.3633 0.3896 0.9510 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.2350 2.1230 -4.3587 29 1 4.1993 2.0228 2.7080 30 1 5.1259 0.5074 4.4121 31 1 2.5390 -3.0143 5.3802 32 1 3.4395 -2.9701 6.9152 33 1 2.0672 -1.8667 6.6565 34 1 1.3292 -1.4258 4.7468 35 1 0.4099 0.0938 3.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:37 Heat of formation + Delta-G solvation = -46.168844 kcal Electronic energy + Delta-G solvation = -18590.537887 eV Core-core repulsion = 15681.033290 eV Total energy + Delta-G solvation = -2909.504597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.03946 -37.32695 -35.30835 -34.53881 -31.78048 -30.99451 -30.05419 -27.48631 -27.32039 -23.56943 -22.60828 -22.08072 -20.69461 -18.31151 -17.41110 -16.49546 -16.12651 -15.87615 -15.49210 -15.36709 -14.51138 -13.93455 -13.79608 -13.61197 -13.43067 -12.78154 -12.70339 -12.44176 -12.06553 -12.02658 -11.85334 -11.27168 -11.07748 -10.86352 -10.81522 -10.60530 -10.38272 -10.00516 -9.69123 -9.25574 -9.03401 -8.87776 -8.65193 -8.32381 -7.28483 -6.16459 -4.18591 1.25937 1.47686 2.68767 3.15958 3.24746 3.33905 3.35508 3.57479 3.97783 4.35310 4.68200 4.78310 4.91900 4.95242 5.03306 5.18050 5.25150 5.46162 5.52161 5.75318 6.00144 6.06961 6.10438 6.14622 6.23514 6.38549 6.57712 6.67763 6.81068 6.83809 6.93984 7.11002 7.33101 7.49678 7.57681 8.24403 8.80133 9.43797 10.94816 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.028161 B = 0.005972 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.050776 B = 4687.169158 C = 4943.616733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.278 4.278 4 H 0.076 0.924 5 C -0.499 4.499 6 H 0.081 0.919 7 C 0.086 3.914 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.265 1.265 13 S 1.311 4.689 14 O -0.855 6.855 15 C -0.481 4.481 16 C -0.012 4.012 17 C -0.171 4.171 18 C 0.143 3.857 19 O -0.320 6.320 20 C 0.027 3.973 21 C -0.227 4.227 22 C -0.012 4.012 23 H 0.079 0.921 24 H 0.023 0.977 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.266 0.734 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.124 0.876 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -4.752 15.833 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.154 4.154 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.538 4.538 6 H 0.099 0.901 7 C -0.119 4.119 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.190 1.190 13 S 1.510 4.490 14 O -0.851 6.851 15 C -0.576 4.576 16 C -0.031 4.031 17 C -0.191 4.191 18 C 0.098 3.902 19 O -0.233 6.233 20 C -0.068 4.068 21 C -0.247 4.247 22 C -0.031 4.031 23 H 0.098 0.902 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.569 -3.911 15.917 17.658 hybrid contribution -0.474 -3.437 -0.506 3.507 sum 6.095 -7.348 15.410 18.128 Atomic orbital electron populations 1.22039 0.95397 0.99496 1.04987 1.21775 0.97230 0.97241 0.99147 1.25404 1.03176 1.00054 1.11192 0.90579 1.20149 1.32357 1.13042 0.88215 0.90117 1.24861 0.94844 0.96332 0.95839 1.69871 1.43779 1.39969 0.99251 0.86813 0.81085 0.83522 0.76756 1.20779 1.22440 1.18975 1.68965 0.91958 1.03816 0.84262 1.92965 1.27762 1.81621 1.82717 1.28267 1.01266 1.12204 1.15836 1.20714 0.93283 0.96069 0.93000 1.20499 1.00131 0.97442 1.00999 1.19155 0.92182 0.90208 0.88654 1.86050 1.39729 1.44689 1.52841 1.23042 0.94634 0.90655 0.98460 1.21287 0.94944 1.04446 1.03978 1.20970 0.99644 0.90750 0.91782 0.90241 0.95747 0.90788 0.93906 0.94485 0.92377 0.84071 0.85125 0.92653 0.88350 0.92639 0.85861 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.18 37.16 0.34 -3.42 16 2 C -0.12 -2.60 4.99 -26.73 -0.13 -2.73 16 3 C -0.28 -6.09 2.17 -27.88 -0.06 -6.15 16 4 H 0.08 1.56 7.20 -51.93 -0.37 1.18 16 5 C -0.50 -13.17 7.51 -34.44 -0.26 -13.43 16 6 H 0.08 2.30 7.96 -52.49 -0.42 1.88 16 7 C 0.09 2.38 5.41 -17.82 -0.10 2.28 16 8 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 9 Si 0.89 21.75 24.31 -169.99 -4.13 17.62 16 10 H -0.28 -6.97 6.92 56.52 0.39 -6.58 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 13 S 1.31 23.67 13.03 -107.50 -1.40 22.27 16 14 O -0.86 -19.38 13.75 -35.23 -0.48 -19.86 16 15 C -0.48 -7.80 4.64 -39.56 -0.18 -7.99 16 16 C -0.01 -0.16 9.75 -39.60 -0.39 -0.54 16 17 C -0.17 -2.27 9.99 -39.43 -0.39 -2.66 16 18 C 0.14 2.01 6.69 -39.22 -0.26 1.75 16 19 O -0.32 -4.03 10.50 -19.44 -0.20 -4.23 16 20 C 0.03 0.24 9.81 101.05 0.99 1.23 16 21 C -0.23 -3.31 9.04 -39.43 -0.36 -3.67 16 22 C -0.01 -0.21 8.50 -39.61 -0.34 -0.55 16 23 H 0.08 2.07 6.72 -51.93 -0.35 1.72 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.71 4.93 -51.93 -0.26 1.46 16 26 H 0.04 1.01 3.45 -51.92 -0.18 0.83 16 27 H 0.04 0.76 6.21 -51.93 -0.32 0.43 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 34 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 35 H 0.13 2.37 6.77 -52.49 -0.36 2.02 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -33.88 289.34 -6.47 -40.35 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.25 Total: 0.99 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: -1.13 Total: -35.88 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.77 Total: -25.61 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.69 Total: -24.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.13 Total: 17.62 kcal Atomic # 16 Polarization: 23.67 SS G_CDS: -1.40 Total: 22.27 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.88 -6.47 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.818 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds