Wall clock time and date at job start Mon Mar 30 2020 08:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47010 * 2 1 4 4 H 1.09001 * 109.47276 * 175.02683 * 3 2 1 5 5 C 1.50703 * 109.46748 * 55.03527 * 3 2 1 6 6 H 1.08009 * 119.99503 * 239.99605 * 5 3 2 7 7 C 1.37873 * 120.00541 * 59.99673 * 5 3 2 8 8 N 1.31520 * 119.99925 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00231 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47062 * 89.99980 * 9 7 5 11 11 H 1.48495 * 109.47023 * 210.00186 * 9 7 5 12 12 H 1.48493 * 109.47236 * 330.00197 * 9 7 5 13 13 S 1.81395 * 109.47537 * 295.03273 * 3 2 1 14 14 O 1.42095 * 109.47281 * 194.77517 * 13 3 2 15 15 C 1.76207 * 102.99779 * 303.82918 * 13 3 2 16 16 C 1.38266 * 119.94217 * 95.95349 * 15 13 3 17 17 C 1.38149 * 120.05407 * 180.27481 * 16 15 13 18 18 C 1.38731 * 119.93975 * 359.45125 * 17 16 15 19 19 O 1.35901 * 120.05624 * 180.25726 * 18 17 16 20 20 C 1.42906 * 116.99610 * 0.30937 * 19 18 17 21 21 C 1.38733 * 119.89246 * 0.56515 * 18 17 16 22 22 C 1.38140 * 119.94171 * 359.71025 * 21 18 17 23 23 H 1.09002 * 109.47041 * 54.61630 * 1 2 3 24 24 H 1.09003 * 109.47235 * 174.61270 * 1 2 3 25 25 H 1.09000 * 109.47299 * 294.61464 * 1 2 3 26 26 H 1.09006 * 109.47491 * 240.00408 * 2 1 3 27 27 H 1.08998 * 109.47614 * 120.00392 * 2 1 3 28 28 H 0.96990 * 120.00148 * 179.97438 * 8 7 5 29 29 H 1.08000 * 119.97662 * 359.97438 * 16 15 13 30 30 H 1.07999 * 120.02690 * 179.69845 * 17 16 15 31 31 H 1.09000 * 109.46885 * 180.02562 * 20 19 18 32 32 H 1.08999 * 109.47110 * 300.00222 * 20 19 18 33 33 H 1.08998 * 109.47189 * 60.00243 * 20 19 18 34 34 H 1.07993 * 120.02892 * 179.68827 * 21 18 17 35 35 H 1.08006 * 119.97300 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1263 1.4439 0.0891 5 6 1.4396 2.1875 1.1644 6 1 0.8299 3.0617 0.9896 7 6 1.6687 1.7532 2.4527 8 7 2.4116 0.6889 2.6656 9 14 0.9252 2.6770 3.8960 10 1 -0.4124 2.1129 4.2086 11 1 1.8098 2.5390 5.0807 12 1 0.7871 4.1135 3.5461 13 16 1.5592 2.2539 -1.5495 14 8 2.3049 3.4531 -1.7074 15 6 2.2451 1.1958 -2.7803 16 6 1.4593 0.2226 -3.3696 17 6 1.9962 -0.6119 -4.3307 18 6 3.3218 -0.4654 -4.7126 19 8 3.8510 -1.2817 -5.6616 20 6 2.9828 -2.2648 -6.2290 21 6 4.1083 0.5115 -4.1196 22 6 3.5683 1.3398 -3.1549 23 1 -0.3633 0.5951 -0.8379 24 1 -0.3634 -1.0231 -0.0965 25 1 -0.3634 0.4280 0.9343 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5731 0.3836 3.5719 29 1 0.4263 0.1116 -3.0748 30 1 1.3833 -1.3751 -4.7872 31 1 3.5293 -2.8476 -6.9704 32 1 2.6201 -2.9266 -5.4425 33 1 2.1369 -1.7704 -6.7066 34 1 5.1419 0.6242 -4.4116 35 1 4.1802 2.1003 -2.6926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084259998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:39 Heat of formation + Delta-G solvation = -80.895249 kcal Electronic energy + Delta-G solvation = -18377.453094 eV Core-core repulsion = 15466.442648 eV Total energy + Delta-G solvation = -2911.010447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05187 -38.36643 -36.80479 -36.38459 -33.27755 -32.13471 -31.12749 -28.93225 -28.14608 -25.73677 -23.77521 -23.22677 -21.97372 -19.43094 -18.83626 -18.00319 -17.24152 -17.08235 -16.69745 -16.62508 -15.66247 -15.56313 -15.33411 -14.71914 -14.60868 -14.23640 -14.09973 -13.68663 -13.66269 -13.10753 -12.89466 -12.78304 -12.64821 -12.40122 -12.23650 -12.03863 -11.84026 -11.65764 -11.48037 -11.01512 -10.69888 -10.51551 -10.02668 -9.47897 -8.94181 -8.10103 -6.28874 0.06266 0.33989 1.22652 1.42793 1.45179 1.54937 2.14701 2.30803 2.43157 2.67814 3.12891 3.27738 3.80376 3.89527 4.28636 4.35069 4.44915 4.51031 4.61019 4.69216 4.75614 4.78507 4.82533 4.98399 5.01355 5.24628 5.31485 5.36127 5.40483 5.53776 5.65957 5.71026 5.89033 6.03739 6.25193 6.38136 6.79035 7.38075 8.93286 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.005266 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.054187 B = 5316.004473 C = 5588.310209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.239 4.239 4 H -0.012 1.012 5 C -0.518 4.518 6 H 0.063 0.937 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.256 1.256 11 H -0.290 1.290 12 H -0.272 1.272 13 S 1.343 4.657 14 O -0.941 6.941 15 C -0.494 4.494 16 C 0.003 3.997 17 C -0.216 4.216 18 C 0.150 3.850 19 O -0.334 6.334 20 C 0.013 3.987 21 C -0.184 4.184 22 C -0.046 4.046 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.261 0.739 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 -8.764 -15.194 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.358 4.358 4 H 0.006 0.994 5 C -0.557 4.557 6 H 0.081 0.919 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.181 1.181 11 H -0.216 1.216 12 H -0.197 1.197 13 S 1.547 4.453 14 O -0.937 6.937 15 C -0.592 4.592 16 C -0.015 4.015 17 C -0.235 4.235 18 C 0.104 3.896 19 O -0.247 6.247 20 C -0.080 4.080 21 C -0.204 4.204 22 C -0.065 4.065 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.198 0.802 30 H 0.191 0.809 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.510 -8.015 -15.313 18.845 hybrid contribution 2.800 0.331 1.420 3.157 sum -4.710 -7.684 -13.893 16.561 Atomic orbital electron populations 1.21683 0.93954 1.01174 1.02383 1.21080 0.97559 0.93883 1.00218 1.24965 0.99021 1.03095 1.08737 0.99393 1.20705 1.32428 1.11937 0.90646 0.91856 1.25642 0.95094 0.95532 1.01122 1.70046 1.38533 1.24779 1.21391 0.85669 0.79117 0.79209 0.78506 1.18059 1.21573 1.19682 1.67789 1.14691 0.78799 0.84005 1.92845 1.75611 1.40576 1.84673 1.27698 1.01365 1.14041 1.16095 1.21157 1.00600 0.88904 0.90885 1.21734 0.94363 1.04482 1.02912 1.19211 0.92602 0.89606 0.88207 1.86061 1.41633 1.45735 1.51282 1.23467 0.95591 0.89896 0.99089 1.20509 1.01020 0.98218 1.00680 1.20830 0.94942 0.95978 0.94742 0.90645 0.91962 0.93676 0.93895 0.92680 0.92952 0.80234 0.80865 0.86194 0.91221 0.90792 0.85029 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.38 71.98 0.68 -3.82 16 2 C -0.09 -3.75 5.30 30.59 0.16 -3.59 16 3 C -0.24 -11.86 2.55 29.85 0.08 -11.79 16 4 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 5 C -0.52 -27.75 7.20 25.60 0.18 -27.57 16 6 H 0.06 3.28 7.71 -2.91 -0.02 3.26 16 7 C 0.03 1.48 5.27 84.65 0.45 1.93 16 8 N -0.91 -51.94 11.38 21.45 0.24 -51.70 16 9 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 S 1.34 54.88 11.67 -56.49 -0.66 54.22 16 14 O -0.94 -50.34 17.07 -148.98 -2.54 -52.88 16 15 C -0.49 -17.67 4.64 22.28 0.10 -17.56 16 16 C 0.00 0.08 8.89 22.26 0.20 0.28 16 17 C -0.22 -4.89 9.04 22.37 0.20 -4.69 16 18 C 0.15 4.13 6.69 22.51 0.15 4.28 16 19 O -0.33 -7.85 10.50 -92.43 -0.97 -8.82 16 20 C 0.01 0.17 9.81 113.37 1.11 1.28 16 21 C -0.18 -6.14 9.99 22.36 0.22 -5.91 16 22 C -0.05 -1.79 9.43 22.25 0.21 -1.58 16 23 H 0.07 1.91 6.96 -2.39 -0.02 1.89 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.04 1.72 7.27 -2.39 -0.02 1.70 16 26 H 0.04 1.62 6.37 -2.38 -0.02 1.61 16 27 H 0.05 2.79 6.22 -2.39 -0.01 2.77 16 28 H 0.26 14.22 8.31 -92.72 -0.77 13.45 16 29 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.17 2.37 6.30 -2.91 -0.02 2.35 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 33 H 0.07 0.70 7.68 -2.39 -0.02 0.68 16 34 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.10 4.25 7.61 -2.91 -0.02 4.23 16 Total: -1.00 -78.41 302.26 2.92 -75.49 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.08 Total: 7.82 kcal Atomic # 6 Polarization: -72.48 SS G_CDS: 3.74 Total: -68.74 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.24 Total: -51.70 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -3.51 Total: -61.69 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 54.88 SS G_CDS: -0.66 Total: 54.22 kcal Total: -78.41 2.92 -75.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.405 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds