Wall clock time and date at job start Mon Mar 30 2020 08:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46644 * 2 1 4 4 H 1.08998 * 109.46640 * 171.79046 * 3 2 1 5 5 C 1.50700 * 109.47302 * 51.79440 * 3 2 1 6 6 H 1.07998 * 119.99477 * 240.00444 * 5 3 2 7 7 C 1.37872 * 120.00149 * 59.99782 * 5 3 2 8 8 N 1.31521 * 120.00074 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00306 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46797 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47351 * 119.99788 * 9 7 5 12 12 H 1.48499 * 109.47175 * 240.00167 * 9 7 5 13 13 S 1.81397 * 109.46939 * 291.78839 * 3 2 1 14 14 O 1.42104 * 109.46807 * 40.81956 * 13 3 2 15 15 C 1.76193 * 103.00359 * 291.76198 * 13 3 2 16 16 C 1.38263 * 119.94434 * 266.64670 * 15 13 3 17 17 C 1.38145 * 120.05599 * 179.72261 * 16 15 13 18 18 C 1.38728 * 119.94410 * 0.57384 * 17 16 15 19 19 O 1.35904 * 120.05973 * 179.67743 * 18 17 16 20 20 C 1.42903 * 116.99604 * 0.02850 * 19 18 17 21 21 C 1.38733 * 119.88931 * 359.70532 * 18 17 16 22 22 C 1.38152 * 119.94059 * 359.97438 * 21 18 17 23 23 H 1.09001 * 109.46861 * 178.95409 * 1 2 3 24 24 H 1.09004 * 109.47158 * 298.94926 * 1 2 3 25 25 H 1.08992 * 109.47750 * 58.95255 * 1 2 3 26 26 H 1.08999 * 109.47293 * 240.00015 * 2 1 3 27 27 H 1.09001 * 109.47473 * 119.99690 * 2 1 3 28 28 H 0.96995 * 120.00026 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.97396 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.02788 * 180.25261 * 17 16 15 31 31 H 1.08996 * 109.47155 * 59.99658 * 20 19 18 32 32 H 1.09001 * 109.46741 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.46887 * 299.99206 * 20 19 18 34 34 H 1.08001 * 120.03406 * 179.97438 * 21 18 17 35 35 H 1.08005 * 119.96678 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1199 1.4461 0.1467 5 6 1.3788 2.2091 1.1165 6 1 0.7796 3.0794 0.8929 7 6 1.5388 1.7993 2.4231 8 7 2.2680 0.7391 2.6952 9 14 0.7188 2.7490 3.8070 10 1 -0.0405 3.8926 3.2404 11 1 -0.2102 1.8520 4.5402 12 1 1.7556 3.2578 4.7404 13 16 1.6429 2.2242 -1.5881 14 8 0.3356 1.8398 -1.9914 15 6 2.6777 1.3621 -2.7239 16 6 3.9246 1.8677 -3.0422 17 6 4.7402 1.1907 -3.9281 18 6 4.3024 0.0088 -4.5077 19 8 5.1003 -0.6558 -5.3846 20 6 6.3782 -0.0802 -5.6635 21 6 3.0486 -0.4935 -4.1912 22 6 2.2394 0.1839 -3.2996 23 1 -0.3633 -1.0275 -0.0188 24 1 -0.3634 0.4974 0.8993 25 1 -0.3634 0.5300 -0.8803 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.3809 0.4510 3.6145 29 1 4.2629 2.7906 -2.5947 30 1 5.7158 1.5839 -4.1733 31 1 6.9535 -0.0082 -4.7405 32 1 6.9121 -0.7089 -6.3760 33 1 6.2437 0.9154 -6.0864 34 1 2.7052 -1.4132 -4.6414 35 1 1.2633 -0.2070 -3.0525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084260006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:45 Heat of formation + Delta-G solvation = -52.015508 kcal Electronic energy + Delta-G solvation = -18401.244559 eV Core-core repulsion = 15491.486432 eV Total energy + Delta-G solvation = -2909.758127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93572 -37.20240 -35.10007 -34.34297 -31.24922 -30.92454 -29.91211 -27.34595 -26.94583 -23.84425 -22.52868 -21.99429 -20.09861 -18.21816 -17.34427 -16.17409 -16.14747 -15.77667 -15.44449 -14.96178 -14.42469 -14.01339 -13.68970 -13.31248 -13.15923 -12.61620 -12.53983 -12.14576 -11.87552 -11.67771 -11.50414 -11.07904 -10.98439 -10.89347 -10.71951 -10.46266 -10.43922 -9.90930 -9.67631 -9.11426 -8.82742 -8.73105 -8.45115 -8.19095 -7.09159 -6.06956 -4.18899 1.39744 1.58182 2.82709 3.24996 3.25484 3.34038 3.38028 3.73381 4.09162 4.36089 4.82347 4.87112 5.01789 5.02283 5.09282 5.23952 5.31845 5.59915 5.66221 5.82752 6.21007 6.24608 6.44342 6.47781 6.58930 6.69581 6.72875 6.94124 7.23366 7.30771 7.37929 7.43726 7.69915 7.72265 7.92810 8.17610 8.80519 9.44354 10.96725 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.005168 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.548725 B = 5417.132642 C = 5574.234995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.224 4.224 4 H 0.072 0.928 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.075 3.925 8 N -0.878 5.878 9 Si 0.892 3.108 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.282 1.282 13 S 1.271 4.729 14 O -0.864 6.864 15 C -0.471 4.471 16 C -0.011 4.011 17 C -0.227 4.227 18 C 0.142 3.858 19 O -0.321 6.321 20 C 0.028 3.972 21 C -0.171 4.171 22 C -0.013 4.013 23 H 0.014 0.986 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.013 0.987 27 H 0.084 0.916 28 H 0.261 0.739 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.125 0.875 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.046 2.602 -11.945 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.142 4.142 3 C -0.345 4.345 4 H 0.090 0.910 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.129 4.129 8 N -0.515 5.515 9 Si 0.719 3.281 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.208 1.208 13 S 1.473 4.527 14 O -0.859 6.859 15 C -0.566 4.566 16 C -0.030 4.030 17 C -0.247 4.247 18 C 0.097 3.903 19 O -0.235 6.235 20 C -0.068 4.068 21 C -0.190 4.190 22 C -0.032 4.032 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.032 0.968 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.143 0.857 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.441 3.041 -12.172 14.587 hybrid contribution -0.326 -1.907 0.916 2.140 sum 7.115 1.134 -11.256 13.364 Atomic orbital electron populations 1.22127 0.97070 0.98561 1.04331 1.21369 0.95499 0.97291 1.00063 1.24791 1.02974 1.00359 1.06360 0.91019 1.20370 1.31886 1.12053 0.89839 0.91874 1.24876 0.94783 0.94808 0.98478 1.69920 1.38501 1.23799 1.19324 0.86530 0.79374 0.80123 0.82063 1.19333 1.20992 1.20787 1.68853 0.85261 1.12633 0.85980 1.92892 1.32268 1.81703 1.79056 1.28170 1.07728 1.06086 1.14603 1.20655 0.91290 0.97917 0.93134 1.21260 1.01841 0.97465 1.04134 1.19109 0.90662 0.91146 0.89411 1.86057 1.28139 1.49878 1.59377 1.23034 0.82975 0.99467 1.01284 1.20489 0.93007 1.02455 1.03090 1.20984 0.98317 0.92307 0.91608 0.96713 0.92187 0.89808 0.96845 0.89806 0.92900 0.84601 0.85479 0.92544 0.88513 0.92637 0.85669 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.33 37.16 0.35 -3.70 16 2 C -0.10 -2.55 5.32 -26.73 -0.14 -2.69 16 3 C -0.22 -5.22 2.47 -27.88 -0.07 -5.28 16 4 H 0.07 1.70 8.14 -51.92 -0.42 1.28 16 5 C -0.50 -12.76 7.04 -34.44 -0.24 -13.00 16 6 H 0.06 1.55 7.71 -52.49 -0.40 1.15 16 7 C 0.07 1.97 5.09 -17.82 -0.09 1.88 16 8 N -0.88 -24.16 11.42 55.43 0.63 -23.53 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 S 1.27 24.19 13.02 -107.50 -1.40 22.79 16 14 O -0.86 -20.14 13.54 -35.23 -0.48 -20.62 16 15 C -0.47 -8.28 5.30 -39.56 -0.21 -8.49 16 16 C -0.01 -0.16 9.75 -39.61 -0.39 -0.54 16 17 C -0.23 -3.10 9.04 -39.43 -0.36 -3.45 16 18 C 0.14 2.14 6.69 -39.22 -0.26 1.88 16 19 O -0.32 -4.32 10.50 -19.44 -0.20 -4.52 16 20 C 0.03 0.24 9.81 101.05 0.99 1.23 16 21 C -0.17 -2.82 9.99 -39.43 -0.39 -3.21 16 22 C -0.01 -0.25 8.06 -39.60 -0.32 -0.56 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 1.57 6.87 -51.93 -0.36 1.21 16 25 H 0.08 2.12 4.73 -51.93 -0.25 1.87 16 26 H 0.01 0.30 6.20 -51.93 -0.32 -0.02 16 27 H 0.08 2.28 6.34 -51.93 -0.33 1.95 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 29 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.13 1.32 6.30 -52.48 -0.33 0.99 16 31 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.13 2.60 7.38 -52.48 -0.39 2.21 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -32.34 296.92 -7.55 -39.89 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.42 Total: 2.09 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: -1.13 Total: -35.94 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.63 Total: -23.53 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.68 Total: -25.14 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 24.19 SS G_CDS: -1.40 Total: 22.79 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.34 -7.55 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.126 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds