Wall clock time and date at job start Mon Mar 30 2020 08:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46644 * 2 1 4 4 H 1.08998 * 109.46640 * 171.79046 * 3 2 1 5 5 C 1.50700 * 109.47302 * 51.79440 * 3 2 1 6 6 H 1.07998 * 119.99477 * 240.00444 * 5 3 2 7 7 C 1.37872 * 120.00149 * 59.99782 * 5 3 2 8 8 N 1.31521 * 120.00074 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00306 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46797 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47351 * 119.99788 * 9 7 5 12 12 H 1.48499 * 109.47175 * 240.00167 * 9 7 5 13 13 S 1.81397 * 109.46939 * 291.78839 * 3 2 1 14 14 O 1.42104 * 109.46807 * 40.81956 * 13 3 2 15 15 C 1.76193 * 103.00359 * 291.76198 * 13 3 2 16 16 C 1.38263 * 119.94434 * 266.64670 * 15 13 3 17 17 C 1.38145 * 120.05599 * 179.72261 * 16 15 13 18 18 C 1.38728 * 119.94410 * 0.57384 * 17 16 15 19 19 O 1.35904 * 120.05973 * 179.67743 * 18 17 16 20 20 C 1.42903 * 116.99604 * 0.02850 * 19 18 17 21 21 C 1.38733 * 119.88931 * 359.70532 * 18 17 16 22 22 C 1.38152 * 119.94059 * 359.97438 * 21 18 17 23 23 H 1.09001 * 109.46861 * 178.95409 * 1 2 3 24 24 H 1.09004 * 109.47158 * 298.94926 * 1 2 3 25 25 H 1.08992 * 109.47750 * 58.95255 * 1 2 3 26 26 H 1.08999 * 109.47293 * 240.00015 * 2 1 3 27 27 H 1.09001 * 109.47473 * 119.99690 * 2 1 3 28 28 H 0.96995 * 120.00026 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.97396 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.02788 * 180.25261 * 17 16 15 31 31 H 1.08996 * 109.47155 * 59.99658 * 20 19 18 32 32 H 1.09001 * 109.46741 * 179.97438 * 20 19 18 33 33 H 1.09000 * 109.46887 * 299.99206 * 20 19 18 34 34 H 1.08001 * 120.03406 * 179.97438 * 21 18 17 35 35 H 1.08005 * 119.96678 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1199 1.4461 0.1467 5 6 1.3788 2.2091 1.1165 6 1 0.7796 3.0794 0.8929 7 6 1.5388 1.7993 2.4231 8 7 2.2680 0.7391 2.6952 9 14 0.7188 2.7490 3.8070 10 1 -0.0405 3.8926 3.2404 11 1 -0.2102 1.8520 4.5402 12 1 1.7556 3.2578 4.7404 13 16 1.6429 2.2242 -1.5881 14 8 0.3356 1.8398 -1.9914 15 6 2.6777 1.3621 -2.7239 16 6 3.9246 1.8677 -3.0422 17 6 4.7402 1.1907 -3.9281 18 6 4.3024 0.0088 -4.5077 19 8 5.1003 -0.6558 -5.3846 20 6 6.3782 -0.0802 -5.6635 21 6 3.0486 -0.4935 -4.1912 22 6 2.2394 0.1839 -3.2996 23 1 -0.3633 -1.0275 -0.0188 24 1 -0.3634 0.4974 0.8993 25 1 -0.3634 0.5300 -0.8803 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.3809 0.4510 3.6145 29 1 4.2629 2.7906 -2.5947 30 1 5.7158 1.5839 -4.1733 31 1 6.9535 -0.0082 -4.7405 32 1 6.9121 -0.7089 -6.3760 33 1 6.2437 0.9154 -6.0864 34 1 2.7052 -1.4132 -4.6414 35 1 1.2633 -0.2070 -3.0525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084260006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:44 Heat of formation + Delta-G solvation = -72.775787 kcal Electronic energy + Delta-G solvation = -18402.144792 eV Core-core repulsion = 15491.486432 eV Total energy + Delta-G solvation = -2910.658360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02044 -38.33226 -36.94567 -36.18406 -33.22925 -32.10139 -31.10347 -28.92012 -28.15448 -25.78802 -23.74154 -23.18855 -22.05066 -19.37109 -18.76185 -18.04995 -17.33816 -17.01026 -16.70099 -16.63866 -15.84964 -15.57727 -15.15663 -14.68502 -14.41889 -14.23589 -13.82576 -13.74804 -13.40602 -13.30260 -12.88595 -12.78862 -12.64017 -12.43155 -12.25959 -12.12173 -11.81537 -11.77158 -11.60266 -11.03890 -10.58720 -10.37022 -9.97911 -9.42957 -8.79372 -8.04171 -6.21624 0.11345 0.37980 1.33451 1.43754 1.48606 1.58442 2.23352 2.33559 2.46719 2.74619 3.17477 3.34407 3.84321 3.93349 4.30178 4.40784 4.43115 4.49450 4.52496 4.60601 4.65757 4.73974 4.74753 5.02860 5.05282 5.23602 5.28826 5.30040 5.42544 5.45721 5.64621 5.72471 5.75709 5.90840 6.20372 6.39595 6.85935 7.44321 8.98356 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.032454 B = 0.005168 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.548725 B = 5417.132642 C = 5574.234995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.245 4.245 4 H 0.064 0.936 5 C -0.507 4.507 6 H 0.068 0.932 7 C 0.027 3.973 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.274 1.274 13 S 1.347 4.653 14 O -0.908 6.908 15 C -0.497 4.497 16 C -0.004 4.004 17 C -0.221 4.221 18 C 0.146 3.854 19 O -0.335 6.335 20 C 0.014 3.986 21 C -0.189 4.189 22 C -0.035 4.035 23 H 0.023 0.977 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.020 0.980 27 H 0.053 0.947 28 H 0.259 0.741 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 4.082 -13.346 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.364 4.364 4 H 0.082 0.918 5 C -0.547 4.547 6 H 0.086 0.914 7 C -0.174 4.174 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.182 1.182 11 H -0.220 1.220 12 H -0.200 1.200 13 S 1.549 4.451 14 O -0.903 6.903 15 C -0.594 4.594 16 C -0.023 4.023 17 C -0.240 4.240 18 C 0.100 3.900 19 O -0.248 6.248 20 C -0.079 4.079 21 C -0.209 4.209 22 C -0.054 4.054 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.195 0.805 30 H 0.186 0.814 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.372 4.538 -13.550 17.089 hybrid contribution -0.773 -2.443 1.126 2.799 sum 8.599 2.095 -12.424 15.254 Atomic orbital electron populations 1.22033 0.97309 0.98876 1.03049 1.21276 0.95198 0.98427 0.98886 1.24959 1.02293 0.99515 1.09637 0.91754 1.20728 1.31261 1.12056 0.90620 0.91388 1.25595 0.95416 0.95577 1.00778 1.70048 1.40104 1.25299 1.19461 0.85693 0.78538 0.79094 0.79604 1.18167 1.21959 1.19956 1.68184 0.83362 1.10471 0.83051 1.92780 1.35596 1.82484 1.79484 1.27871 1.09405 1.06730 1.15403 1.21167 0.89625 0.99027 0.92431 1.21701 1.03191 0.96398 1.02719 1.19246 0.90237 0.91394 0.89097 1.86055 1.29792 1.50448 1.58539 1.23440 0.80997 1.00905 1.02604 1.20565 0.94044 1.02901 1.03352 1.20855 0.97876 0.93417 0.93243 0.95759 0.94119 0.90117 0.96096 0.92789 0.93190 0.80482 0.81399 0.91440 0.86190 0.90902 0.85178 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.89 9.33 71.98 0.67 -7.22 16 2 C -0.10 -5.01 5.32 30.60 0.16 -4.85 16 3 C -0.25 -11.51 2.47 29.85 0.07 -11.44 16 4 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 5 C -0.51 -25.90 7.04 25.60 0.18 -25.72 16 6 H 0.07 3.32 7.71 -2.91 -0.02 3.30 16 7 C 0.03 1.44 5.09 84.65 0.43 1.87 16 8 N -0.91 -51.18 11.42 21.45 0.24 -50.94 16 9 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 S 1.35 50.50 13.02 -56.49 -0.74 49.77 16 14 O -0.91 -42.63 13.54 -148.98 -2.02 -44.65 16 15 C -0.50 -16.88 5.30 22.28 0.12 -16.76 16 16 C 0.00 -0.09 9.75 22.25 0.22 0.12 16 17 C -0.22 -5.12 9.04 22.36 0.20 -4.92 16 18 C 0.15 4.05 6.69 22.51 0.15 4.20 16 19 O -0.33 -8.02 10.50 -92.47 -0.97 -8.99 16 20 C 0.01 0.19 9.81 113.37 1.11 1.30 16 21 C -0.19 -6.14 9.99 22.37 0.22 -5.92 16 22 C -0.03 -1.29 8.06 22.25 0.18 -1.11 16 23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 2.17 6.87 -2.39 -0.02 2.16 16 25 H 0.08 4.18 4.73 -2.39 -0.01 4.17 16 26 H 0.02 0.99 6.20 -2.39 -0.01 0.98 16 27 H 0.05 3.04 6.34 -2.39 -0.02 3.03 16 28 H 0.26 13.97 8.31 -92.71 -0.77 13.19 16 29 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.17 2.50 6.30 -2.91 -0.02 2.48 16 31 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.74 7.66 -2.39 -0.02 0.73 16 34 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.10 4.35 7.38 -2.91 -0.02 4.32 16 Total: -1.00 -71.34 296.92 3.36 -67.98 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.09 Total: 13.32 kcal Atomic # 6 Polarization: -74.15 SS G_CDS: 3.72 Total: -70.43 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.24 Total: -50.94 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -2.99 Total: -53.64 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 50.50 SS G_CDS: -0.74 Total: 49.77 kcal Total: -71.34 3.36 -67.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.795 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds