Wall clock time and date at job start Mon Mar 30 2020 08:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46968 * 2 1 4 4 H 1.09005 * 109.46731 * 175.00621 * 3 2 1 5 5 C 1.50699 * 109.47104 * 55.00367 * 3 2 1 6 6 H 1.07999 * 119.99666 * 239.99719 * 5 3 2 7 7 C 1.37877 * 119.99788 * 60.00101 * 5 3 2 8 8 N 1.31512 * 120.00431 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99641 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47083 * 59.99742 * 9 7 5 11 11 H 1.48502 * 109.47072 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46842 * 299.99667 * 9 7 5 13 13 S 1.81401 * 109.47025 * 294.99862 * 3 2 1 14 14 O 1.42104 * 109.46935 * 194.75312 * 13 3 2 15 15 C 1.76191 * 103.00296 * 303.81611 * 13 3 2 16 16 C 1.38291 * 119.96845 * 275.10486 * 15 13 3 17 17 C 1.38254 * 120.10895 * 179.72539 * 16 15 13 18 18 C 1.38163 * 120.05697 * 0.55054 * 17 16 15 19 19 C 1.38711 * 119.94138 * 359.72269 * 18 17 16 20 20 O 1.35904 * 120.05743 * 179.97438 * 19 18 17 21 21 C 1.42895 * 116.99588 * 0.02562 * 20 19 18 22 22 C 1.38120 * 119.97425 * 95.37972 * 15 13 3 23 23 H 1.08998 * 109.46973 * 54.41162 * 1 2 3 24 24 H 1.09007 * 109.47238 * 294.41353 * 1 2 3 25 25 H 1.08999 * 109.47301 * 174.41398 * 1 2 3 26 26 H 1.08996 * 109.47389 * 119.99985 * 2 1 3 27 27 H 1.09002 * 109.47596 * 240.00275 * 2 1 3 28 28 H 0.96998 * 119.99995 * 180.02562 * 8 7 5 29 29 H 1.07995 * 119.94784 * 359.97438 * 16 15 13 30 30 H 1.07997 * 119.96868 * 180.24373 * 17 16 15 31 31 H 1.07989 * 120.03087 * 179.70648 * 18 17 16 32 32 H 1.09003 * 109.46917 * 180.02562 * 21 20 19 33 33 H 1.08996 * 109.47554 * 300.00341 * 21 20 19 34 34 H 1.09000 * 109.47092 * 60.00609 * 21 20 19 35 35 H 1.07997 * 120.02745 * 359.97438 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1263 1.4438 0.0895 5 6 1.4391 2.1878 1.1639 6 1 0.8295 3.0619 0.9887 7 6 1.6677 1.7537 2.4524 8 7 2.4097 0.6890 2.6658 9 14 0.9235 2.6779 3.8952 10 1 -0.5565 2.6767 3.7734 11 1 1.3159 2.0135 5.1641 12 1 1.4191 4.0777 3.8950 13 16 1.5601 2.2535 -1.5501 14 8 2.3055 3.4531 -1.7076 15 6 2.2468 1.1955 -2.7802 16 6 3.5653 1.3511 -3.1673 17 6 4.1088 0.5188 -4.1282 18 6 3.3323 -0.4634 -4.7124 19 6 2.0079 -0.6178 -4.3298 20 8 1.2418 -1.5828 -4.9032 21 6 1.8655 -2.4032 -5.8931 22 6 1.4663 0.2151 -3.3611 23 1 -0.3633 0.5981 -0.8357 24 1 -0.3634 0.4248 0.9358 25 1 -0.3634 -1.0228 -0.1000 26 1 1.8933 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.5702 0.3834 3.5723 29 1 4.1726 2.1214 -2.7154 30 1 5.1398 0.6398 -4.4260 31 1 3.7559 -1.1102 -5.4663 32 1 1.1453 -3.1299 -6.2690 33 1 2.2141 -1.7788 -6.7156 34 1 2.7127 -2.9267 -5.4499 35 1 0.4356 0.0967 -3.0613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084260217.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:50 Heat of formation + Delta-G solvation = -56.519568 kcal Electronic energy + Delta-G solvation = -18468.726219 eV Core-core repulsion = 15558.772782 eV Total energy + Delta-G solvation = -2909.953438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88604 -37.17027 -34.97761 -34.52489 -31.49126 -30.81952 -29.89156 -27.29678 -27.09297 -23.93226 -22.54389 -21.98948 -20.23499 -18.50917 -16.59733 -16.12834 -15.98011 -15.75942 -15.71308 -15.08065 -14.51780 -13.91601 -13.77612 -13.43100 -13.35472 -12.63074 -12.48760 -12.34030 -12.08905 -11.58866 -11.33138 -11.17433 -10.97576 -10.92421 -10.87955 -10.62041 -10.38388 -9.98219 -9.82476 -9.20188 -9.00809 -8.79834 -8.51846 -8.04332 -7.21584 -6.09861 -4.21470 1.28190 1.66141 2.69547 3.27754 3.32309 3.35130 3.38554 3.69458 4.03952 4.35291 4.84420 4.89366 5.05012 5.05630 5.09657 5.21700 5.35297 5.52958 5.67100 5.71794 6.13486 6.30223 6.39842 6.41508 6.50228 6.55501 6.67007 6.84110 6.87212 7.12128 7.26401 7.47680 7.51118 7.66024 7.83223 8.13230 8.77721 9.42234 10.95008 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.005668 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.311685 B = 4938.409486 C = 5327.331259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.219 4.219 4 H 0.047 0.953 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.076 3.924 8 N -0.880 5.880 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.275 1.275 13 S 1.271 4.729 14 O -0.875 6.875 15 C -0.397 4.397 16 C -0.094 4.094 17 C -0.100 4.100 18 C -0.189 4.189 19 C 0.104 3.896 20 O -0.317 6.317 21 C 0.029 3.971 22 C -0.074 4.074 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.094 0.906 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -6.514 -13.245 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 C -0.341 4.341 4 H 0.065 0.935 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.129 4.129 8 N -0.516 5.516 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.201 1.201 13 S 1.472 4.528 14 O -0.870 6.870 15 C -0.490 4.490 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.207 4.207 19 C 0.058 3.942 20 O -0.231 6.231 21 C -0.067 4.067 22 C -0.093 4.093 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.113 0.887 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.946 -5.823 -13.278 15.026 hybrid contribution 2.451 -0.065 0.813 2.583 sum -1.495 -5.888 -12.465 13.866 Atomic orbital electron populations 1.21701 0.96999 0.98784 1.01968 1.21230 0.94988 0.96073 1.01328 1.24772 1.02839 1.00704 1.05736 0.93473 1.20300 1.32773 1.11924 0.89448 0.91966 1.24868 0.94650 0.94801 0.98567 1.69878 1.37259 1.23268 1.21237 0.86608 0.79854 0.80101 0.81300 1.19627 1.21152 1.20078 1.69088 1.16295 0.80809 0.86561 1.92971 1.74025 1.36197 1.83855 1.28197 1.00335 1.08303 1.12203 1.21066 0.94786 0.98490 0.96951 1.20975 0.99316 0.95082 0.96548 1.21231 0.93873 1.01973 1.03665 1.19105 0.90118 0.90201 0.94735 1.86067 1.39045 1.44328 1.53628 1.22996 0.99381 0.93974 0.90333 1.20106 1.00480 0.93663 0.95058 0.94243 0.91346 0.94918 0.88733 0.95657 0.92680 0.85808 0.86138 0.85838 0.88430 0.92991 0.92884 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.38 37.16 0.35 -2.18 16 2 C -0.10 -2.10 5.30 -26.73 -0.14 -2.24 16 3 C -0.22 -5.28 2.55 -27.88 -0.07 -5.35 16 4 H 0.05 1.30 8.14 -51.92 -0.42 0.88 16 5 C -0.50 -13.17 7.20 -34.44 -0.25 -13.41 16 6 H 0.06 1.58 7.71 -52.49 -0.40 1.17 16 7 C 0.08 2.00 5.27 -17.82 -0.09 1.91 16 8 N -0.88 -24.20 11.37 55.43 0.63 -23.57 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 S 1.27 26.03 11.67 -107.50 -1.25 24.78 16 14 O -0.87 -22.43 17.04 -35.23 -0.60 -23.03 16 15 C -0.40 -7.39 4.66 -39.60 -0.18 -7.58 16 16 C -0.09 -1.77 9.44 -39.56 -0.37 -2.14 16 17 C -0.10 -1.56 10.04 -39.60 -0.40 -1.96 16 18 C -0.19 -2.67 9.04 -39.43 -0.36 -3.03 16 19 C 0.10 1.57 6.69 -39.21 -0.26 1.31 16 20 O -0.32 -4.23 10.50 -19.44 -0.20 -4.43 16 21 C 0.03 0.25 9.81 101.05 0.99 1.24 16 22 C -0.07 -1.19 8.80 -39.43 -0.35 -1.54 16 23 H 0.04 0.60 6.96 -51.93 -0.36 0.24 16 24 H 0.07 1.38 7.28 -51.92 -0.38 1.00 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 2.35 6.22 -51.93 -0.32 2.03 16 27 H 0.02 0.50 6.34 -51.93 -0.33 0.17 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.12 2.51 7.58 -52.49 -0.40 2.11 16 30 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 34 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -33.04 302.16 -7.60 -40.64 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.57 Total: 0.52 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: -1.14 Total: -34.96 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.63 Total: -23.57 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.80 Total: -27.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 26.03 SS G_CDS: -1.25 Total: 24.78 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.04 -7.60 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260217.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.880 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds