Wall clock time and date at job start Mon Mar 30 2020 08:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47392 * 2 1 4 4 H 1.09006 * 109.47258 * 171.79623 * 3 2 1 5 5 C 1.50703 * 109.47236 * 51.79141 * 3 2 1 6 6 H 1.07999 * 119.99652 * 239.99767 * 5 3 2 7 7 C 1.37868 * 119.99687 * 60.00193 * 5 3 2 8 8 N 1.31520 * 120.00472 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99905 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47340 * 59.99840 * 9 7 5 11 11 H 1.48503 * 109.47462 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47072 * 299.99670 * 9 7 5 13 13 S 1.81401 * 109.47070 * 291.79231 * 3 2 1 14 14 O 1.42095 * 109.47376 * 40.78145 * 13 3 2 15 15 C 1.76202 * 103.00022 * 291.72811 * 13 3 2 16 16 C 1.38292 * 119.97244 * 266.88956 * 15 13 3 17 17 C 1.38249 * 120.11331 * 180.02562 * 16 15 13 18 18 C 1.38162 * 120.05211 * 359.97438 * 17 16 15 19 19 C 1.38712 * 119.94780 * 0.02562 * 18 17 16 20 20 O 1.35895 * 120.05802 * 179.97438 * 19 18 17 21 21 C 1.42902 * 116.99906 * 0.02872 * 20 19 18 22 22 C 1.38120 * 119.97220 * 86.90722 * 15 13 3 23 23 H 1.08994 * 109.47936 * 178.99244 * 1 2 3 24 24 H 1.09008 * 109.47205 * 298.99273 * 1 2 3 25 25 H 1.09006 * 109.47231 * 58.98900 * 1 2 3 26 26 H 1.09003 * 109.46802 * 239.99761 * 2 1 3 27 27 H 1.09003 * 109.47203 * 120.00150 * 2 1 3 28 28 H 0.96993 * 120.00052 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.94412 * 0.02562 * 16 15 13 30 30 H 1.07997 * 119.96980 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.02403 * 180.02562 * 18 17 16 32 32 H 1.08998 * 109.47649 * 59.99748 * 21 20 19 33 33 H 1.09002 * 109.47384 * 179.97438 * 21 20 19 34 34 H 1.09004 * 109.46643 * 299.98935 * 21 20 19 35 35 H 1.07996 * 120.02998 * 0.25939 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1201 1.4459 0.1466 5 6 1.3789 2.2090 1.1164 6 1 0.7799 3.0795 0.8929 7 6 1.5389 1.7992 2.4230 8 7 2.2681 0.7389 2.6952 9 14 0.7190 2.7490 3.8069 10 1 -0.7525 2.7437 3.6069 11 1 1.0446 2.1095 5.1070 12 1 1.2135 4.1492 3.8070 13 16 1.6430 2.2242 -1.5880 14 8 0.3361 1.8393 -1.9919 15 6 2.6785 1.3625 -2.7238 16 6 3.9277 1.8656 -3.0384 17 6 4.7423 1.1922 -3.9296 18 6 4.3101 0.0142 -4.5079 19 6 3.0576 -0.4925 -4.1940 20 8 2.6301 -1.6507 -4.7619 21 6 3.5228 -2.2946 -5.6733 22 6 2.2417 0.1855 -3.2996 23 1 -0.3635 -1.0274 -0.0181 24 1 -0.3634 0.4981 0.8989 25 1 -0.3634 0.5295 -0.8808 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.3809 0.4509 3.6144 29 1 4.2674 2.7861 -2.5871 30 1 5.7172 1.5874 -4.1739 31 1 4.9471 -0.5116 -5.2037 32 1 4.4497 -2.5459 -5.1576 33 1 3.0601 -3.2056 -6.0527 34 1 3.7397 -1.6236 -6.5045 35 1 1.2643 -0.2047 -3.0570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084260221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:55 Heat of formation + Delta-G solvation = -72.275059 kcal Electronic energy + Delta-G solvation = -18537.991976 eV Core-core repulsion = 15627.355329 eV Total energy + Delta-G solvation = -2910.636647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00608 -38.29650 -37.00468 -36.23304 -33.26651 -32.07349 -31.08424 -28.94444 -28.16625 -25.82438 -23.77679 -23.17811 -22.08558 -19.74189 -18.24806 -17.86777 -17.27869 -17.00591 -16.88471 -16.68014 -16.06039 -15.76973 -15.14187 -14.87499 -14.47167 -14.15246 -13.83516 -13.60990 -13.36226 -13.21684 -12.81581 -12.71450 -12.64545 -12.48208 -12.34466 -12.10814 -11.92676 -11.81677 -11.63416 -11.08324 -10.60870 -10.38708 -10.09893 -9.22295 -8.88911 -8.05149 -6.22812 0.01679 0.47574 1.26881 1.46971 1.49104 1.55355 2.14542 2.40854 2.46559 2.77119 3.15832 3.32220 3.84566 4.03436 4.24686 4.34127 4.40871 4.46485 4.49500 4.55948 4.62691 4.65306 4.71185 4.94234 5.21181 5.25770 5.27347 5.39445 5.41845 5.44837 5.60923 5.70409 5.78435 5.87643 6.17820 6.43995 6.83682 7.43207 8.97619 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.005544 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.311849 B = 5049.214359 C = 5207.846699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.241 4.241 4 H 0.067 0.933 5 C -0.511 4.511 6 H 0.069 0.931 7 C 0.028 3.972 8 N -0.910 5.910 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.253 1.253 13 S 1.346 4.654 14 O -0.906 6.906 15 C -0.421 4.421 16 C -0.085 4.085 17 C -0.092 4.092 18 C -0.180 4.180 19 C 0.090 3.910 20 O -0.350 6.350 21 C 0.018 3.982 22 C -0.120 4.120 23 H 0.022 0.978 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.017 0.983 27 H 0.055 0.945 28 H 0.260 0.740 29 H 0.175 0.825 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 2.055 -14.071 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.361 4.361 4 H 0.085 0.915 5 C -0.550 4.550 6 H 0.087 0.913 7 C -0.173 4.173 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.177 1.177 13 S 1.548 4.452 14 O -0.902 6.902 15 C -0.518 4.518 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.198 4.198 19 C 0.044 3.956 20 O -0.265 6.265 21 C -0.076 4.076 22 C -0.140 4.140 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.097 0.903 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.192 0.808 30 H 0.191 0.809 31 H 0.178 0.822 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.452 2.574 -14.142 16.675 hybrid contribution -0.886 -2.598 0.982 2.915 sum 7.566 -0.024 -13.159 15.179 Atomic orbital electron populations 1.22025 0.97379 0.98809 1.03014 1.21269 0.95164 0.98467 0.98808 1.24914 1.02491 0.99407 1.09249 0.91466 1.20646 1.31578 1.12191 0.90579 0.91335 1.25603 0.95339 0.95569 1.00770 1.70033 1.39949 1.25225 1.19646 0.85783 0.78771 0.79993 0.78281 1.20595 1.21468 1.17682 1.68283 0.83389 1.10237 0.83264 1.92793 1.35705 1.82297 1.79419 1.27927 1.08599 1.03647 1.11601 1.21330 0.90782 1.01178 0.97106 1.21585 1.00859 0.93618 0.95000 1.21725 0.94756 0.99443 1.03913 1.19292 0.94456 0.87083 0.94799 1.86059 1.46146 1.35174 1.59079 1.23366 0.94364 0.98182 0.91699 1.20322 0.99179 0.95980 0.98474 0.95889 0.93908 0.90326 0.96450 0.92593 0.93102 0.80775 0.80922 0.82216 0.91520 0.86682 0.91003 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.13 9.33 71.98 0.67 -7.45 16 2 C -0.10 -5.11 5.32 30.59 0.16 -4.95 16 3 C -0.24 -11.55 2.47 29.85 0.07 -11.48 16 4 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 5 C -0.51 -26.32 7.04 25.60 0.18 -26.14 16 6 H 0.07 3.36 7.71 -2.91 -0.02 3.34 16 7 C 0.03 1.51 5.09 84.65 0.43 1.94 16 8 N -0.91 -51.45 11.42 21.44 0.24 -51.21 16 9 Si 0.95 42.04 29.54 68.60 2.03 44.06 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 13 S 1.35 52.07 13.02 -56.49 -0.74 51.34 16 14 O -0.91 -44.15 13.54 -148.98 -2.02 -46.17 16 15 C -0.42 -14.87 5.30 22.25 0.12 -14.75 16 16 C -0.08 -2.18 9.75 22.29 0.22 -1.96 16 17 C -0.09 -1.97 10.04 22.25 0.22 -1.75 16 18 C -0.18 -4.37 9.04 22.37 0.20 -4.17 16 19 C 0.09 2.97 6.69 22.51 0.15 3.12 16 20 O -0.35 -11.02 10.50 -92.37 -0.97 -11.99 16 21 C 0.02 0.33 9.81 113.37 1.11 1.44 16 22 C -0.12 -4.77 8.00 22.37 0.18 -4.59 16 23 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.04 2.34 6.87 -2.38 -0.02 2.32 16 25 H 0.08 4.23 4.74 -2.38 -0.01 4.22 16 26 H 0.02 0.86 6.21 -2.39 -0.01 0.84 16 27 H 0.06 3.21 6.34 -2.39 -0.02 3.19 16 28 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.16 2.64 6.30 -2.91 -0.02 2.62 16 32 H 0.07 1.03 7.66 -2.39 -0.02 1.02 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 35 H 0.09 4.30 7.38 -2.91 -0.02 4.28 16 Total: -1.00 -74.51 296.94 3.36 -71.16 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.09 Total: 13.55 kcal Atomic # 6 Polarization: -74.45 SS G_CDS: 3.72 Total: -70.73 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.24 Total: -51.21 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -2.99 Total: -58.16 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.74 Total: 51.34 kcal Total: -74.51 3.36 -71.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084260221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.119 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds