Wall clock time and date at job start Mon Mar 30 2020 08:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00379 * 2 1 4 4 C 1.53008 * 109.47025 * 180.02562 * 3 2 1 5 5 S 1.81398 * 109.46820 * 180.02562 * 4 3 2 6 6 O 1.42101 * 109.47295 * 63.60766 * 5 4 3 7 7 C 1.81399 * 102.99840 * 179.97438 * 5 4 3 8 8 H 1.09005 * 109.47241 * 294.99925 * 7 5 4 9 9 C 1.50705 * 109.47201 * 54.99605 * 7 5 4 10 10 H 1.07999 * 119.99548 * 54.97048 * 9 7 5 11 11 C 1.37875 * 119.99861 * 234.96851 * 9 7 5 12 12 N 1.31517 * 119.99713 * 173.97531 * 11 9 7 13 13 Si 1.86799 * 120.00315 * 353.97166 * 11 9 7 14 14 H 1.48503 * 109.46831 * 85.60652 * 13 11 9 15 15 H 1.48500 * 109.47379 * 205.60335 * 13 11 9 16 16 H 1.48493 * 109.47110 * 325.60930 * 13 11 9 17 17 C 1.50701 * 109.47270 * 174.99954 * 7 5 4 18 18 C 1.38239 * 119.99861 * 304.81177 * 17 7 5 19 19 C 1.38238 * 119.99959 * 179.80645 * 18 17 7 20 20 C 1.38236 * 119.99519 * 0.40678 * 19 18 17 21 21 C 1.38228 * 120.00479 * 359.84731 * 20 19 18 22 22 C 1.38235 * 120.00008 * 125.08914 * 17 7 5 23 23 H 1.08996 * 109.46841 * 59.99639 * 1 2 3 24 24 H 1.08995 * 109.47347 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46745 * 300.00552 * 1 2 3 26 26 H 1.08994 * 109.47021 * 59.99817 * 3 2 1 27 27 H 1.09001 * 109.47109 * 299.99863 * 3 2 1 28 28 H 1.08992 * 109.47433 * 59.99374 * 4 3 2 29 29 H 1.09005 * 109.46811 * 299.99259 * 4 3 2 30 30 H 0.97001 * 120.00277 * 180.02562 * 12 11 9 31 31 H 1.07999 * 119.99481 * 0.02562 * 18 17 7 32 32 H 1.07992 * 119.99800 * 180.23300 * 19 18 17 33 33 H 1.08006 * 119.99165 * 179.83046 * 20 19 18 34 34 H 1.08003 * 120.00190 * 179.97438 * 21 20 19 35 35 H 1.07989 * 120.00118 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 -0.0006 5 16 4.2735 2.8416 0.0001 6 8 3.9226 3.5158 1.2008 7 6 6.0541 2.4953 0.0000 8 1 6.3279 1.9992 0.9312 9 6 6.3917 1.5999 -1.1642 10 1 6.1160 1.8910 -2.1670 11 6 7.0526 0.4091 -0.9491 12 7 7.2425 -0.4270 -1.9463 13 14 7.6785 -0.0165 0.7587 14 1 6.5902 -0.6586 1.5389 15 1 8.8257 -0.9527 0.6465 16 1 8.1169 1.2233 1.4485 17 6 6.8174 3.7889 -0.1232 18 6 6.5620 4.6443 -1.1787 19 6 7.2593 5.8327 -1.2896 20 6 8.2180 6.1618 -0.3496 21 6 8.4771 5.3040 0.7029 22 6 7.7770 4.1174 0.8160 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6887 1.8463 0.8899 27 1 1.6888 1.8463 -0.8900 28 1 3.8569 0.6436 -0.8907 29 1 3.8576 0.6434 0.8892 30 1 7.7071 -1.2650 -1.7949 31 1 5.8151 4.3856 -1.9147 32 1 7.0571 6.5027 -2.1120 33 1 8.7647 7.0890 -0.4378 34 1 9.2264 5.5609 1.4371 35 1 7.9795 3.4472 1.6383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084264829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:58 Heat of formation + Delta-G solvation = -64.845708 kcal Electronic energy + Delta-G solvation = -18211.016050 eV Core-core repulsion = 15300.701564 eV Total energy + Delta-G solvation = -2910.314486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.61056 -37.62030 -34.78332 -33.80943 -31.69053 -31.06622 -30.31798 -27.80682 -26.25524 -23.29764 -22.64556 -22.04466 -20.46409 -17.33156 -16.86917 -16.38813 -16.09927 -15.84369 -15.00465 -14.91476 -14.50983 -14.39259 -13.67321 -13.44362 -13.27535 -12.95526 -12.87668 -12.27823 -12.18076 -12.00285 -11.70995 -11.31801 -11.14545 -10.97188 -10.75588 -10.61097 -10.35539 -10.10885 -9.82712 -9.49351 -9.41983 -8.81354 -8.34395 -7.98964 -7.33784 -6.43052 -4.38661 1.87376 1.98064 2.43470 3.08154 3.18689 3.21532 3.48877 4.14222 4.14645 4.44805 4.70695 5.01920 5.25691 5.32794 5.43575 5.43993 5.45800 5.54166 5.58937 5.68387 5.70677 5.75457 6.03224 6.15508 6.19804 6.23122 6.55447 6.65125 6.66964 7.02737 7.04192 7.17643 7.32035 7.38132 7.61093 8.05900 8.59791 9.16735 10.66389 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.007632 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.283629 B = 3668.024426 C = 4734.409630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.086 3.914 4 C -0.427 4.427 5 S 1.172 4.828 6 O -0.885 6.885 7 C -0.223 4.223 8 H 0.065 0.935 9 C -0.486 4.486 10 H 0.100 0.900 11 C 0.090 3.910 12 N -0.867 5.867 13 Si 0.857 3.143 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.261 1.261 17 C -0.015 4.015 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.146 4.146 21 C -0.120 4.120 22 C -0.127 4.127 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.272 0.728 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 6.459 -0.427 8.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C 0.009 3.991 4 C -0.563 4.563 5 S 1.380 4.620 6 O -0.880 6.880 7 C -0.342 4.342 8 H 0.083 0.917 9 C -0.527 4.527 10 H 0.118 0.882 11 C -0.118 4.118 12 N -0.503 5.503 13 Si 0.684 3.316 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.186 1.186 17 C -0.018 4.018 18 C -0.138 4.138 19 C -0.136 4.136 20 C -0.164 4.164 21 C -0.138 4.138 22 C -0.146 4.146 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.950 6.996 -0.419 9.193 hybrid contribution 1.096 -1.551 2.765 3.355 sum -4.854 5.444 2.346 7.662 Atomic orbital electron populations 1.22720 0.81846 1.02393 0.99781 1.87972 1.18973 1.28397 1.95349 1.22068 0.92333 0.84611 1.00107 1.27545 0.99236 1.20354 1.09212 1.70098 0.92207 0.86927 1.12792 1.92943 1.80512 1.62169 1.52336 1.24234 1.09583 0.96942 1.03469 0.91686 1.20324 1.38835 1.01233 0.92346 0.88213 1.24999 0.94631 0.95657 0.96511 1.69823 1.39507 1.09594 1.31345 0.87110 0.79848 0.79118 0.85527 1.19800 1.20585 1.18550 1.19735 0.95474 0.93191 0.93381 1.21007 1.00950 0.93945 0.97876 1.21031 0.96770 0.97001 0.98802 1.20924 0.99687 0.99677 0.96105 1.20981 0.99723 0.94766 0.98328 1.21060 0.97330 0.96837 0.99414 0.94015 0.89930 0.94472 0.93622 0.92362 0.84339 0.90112 0.91783 0.85377 0.86488 0.87000 0.87029 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.39 -6.66 10.70 -35.23 -0.38 -7.04 16 3 C 0.09 1.45 5.95 37.16 0.22 1.67 16 4 C -0.43 -8.23 5.89 37.16 0.22 -8.01 16 5 S 1.17 22.82 12.02 -107.50 -1.29 21.53 16 6 O -0.88 -21.16 18.14 -35.23 -0.64 -21.80 16 7 C -0.22 -4.92 2.39 -29.03 -0.07 -4.99 16 8 H 0.06 1.53 4.59 -51.92 -0.24 1.29 16 9 C -0.49 -11.58 7.67 -34.44 -0.26 -11.84 16 10 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 11 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 12 N -0.87 -23.52 13.96 55.43 0.77 -22.74 16 13 Si 0.86 20.30 26.94 -169.99 -4.58 15.72 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.26 -6.05 6.20 56.52 0.35 -5.70 16 17 C -0.01 -0.31 4.77 -104.62 -0.50 -0.81 16 18 C -0.12 -2.14 8.91 -39.58 -0.35 -2.49 16 19 C -0.12 -1.87 10.05 -39.58 -0.40 -2.26 16 20 C -0.15 -2.28 10.05 -39.59 -0.40 -2.67 16 21 C -0.12 -2.05 10.05 -39.59 -0.40 -2.45 16 22 C -0.13 -2.57 9.67 -39.58 -0.38 -2.95 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.14 2.71 7.65 -51.93 -0.40 2.31 16 29 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.13 1.99 7.90 -52.49 -0.41 1.58 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.11 2.25 7.33 -52.49 -0.39 1.87 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -31.81 310.90 -7.58 -39.40 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.85 Total: 3.38 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: -1.31 Total: -33.12 kcal Atomic # 7 Polarization: -23.52 SS G_CDS: 0.77 Total: -22.74 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.02 Total: -28.84 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.58 Total: 15.72 kcal Atomic # 16 Polarization: 22.82 SS G_CDS: -1.29 Total: 21.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.81 -7.58 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.449 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds