Wall clock time and date at job start Mon Mar 30 2020 08:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99886 * 2 1 4 4 C 1.53007 * 109.47120 * 180.02562 * 3 2 1 5 5 S 1.81397 * 109.47363 * 180.02562 * 4 3 2 6 6 O 1.42098 * 109.46811 * 296.38858 * 5 4 3 7 7 C 1.81397 * 103.00069 * 179.97438 * 5 4 3 8 8 H 1.09003 * 109.46832 * 296.78091 * 7 5 4 9 9 C 1.50700 * 109.47290 * 56.78106 * 7 5 4 10 10 H 1.07997 * 119.99436 * 59.32277 * 9 7 5 11 11 C 1.37877 * 120.00340 * 239.32351 * 9 7 5 12 12 N 1.31510 * 119.99868 * 173.07218 * 11 9 7 13 13 Si 1.86806 * 119.99635 * 353.06615 * 11 9 7 14 14 H 1.48498 * 109.46909 * 84.77167 * 13 11 9 15 15 H 1.48502 * 109.47066 * 204.76811 * 13 11 9 16 16 H 1.48493 * 109.47397 * 324.77154 * 13 11 9 17 17 C 1.50694 * 109.47196 * 176.78761 * 7 5 4 18 18 C 1.38242 * 119.99680 * 295.65001 * 17 7 5 19 19 C 1.38236 * 119.99968 * 179.80827 * 18 17 7 20 20 C 1.38241 * 119.99995 * 0.40260 * 19 18 17 21 21 C 1.38233 * 119.99579 * 359.85479 * 20 19 18 22 22 C 1.38235 * 120.00765 * 359.95494 * 21 20 19 23 23 H 1.09002 * 109.46992 * 59.99799 * 1 2 3 24 24 H 1.08994 * 109.47303 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47078 * 300.00607 * 1 2 3 26 26 H 1.09004 * 109.47230 * 60.00365 * 3 2 1 27 27 H 1.08997 * 109.47586 * 299.99325 * 3 2 1 28 28 H 1.08996 * 109.46969 * 59.99226 * 4 3 2 29 29 H 1.09005 * 109.46635 * 300.00015 * 4 3 2 30 30 H 0.97007 * 119.99146 * 179.97438 * 12 11 9 31 31 H 1.07998 * 119.99642 * 0.02562 * 18 17 7 32 32 H 1.07999 * 119.99773 * 180.23200 * 19 18 17 33 33 H 1.07994 * 120.00051 * 179.82878 * 20 19 18 34 34 H 1.08004 * 119.99535 * 179.97438 * 21 20 19 35 35 H 1.07986 * 120.00323 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 16 4.2733 2.8418 0.0001 6 8 3.9215 3.5174 -1.1995 7 6 6.0539 2.4957 0.0000 8 1 6.3222 1.9714 0.9173 9 6 6.3986 1.6363 -1.1890 10 1 6.1922 1.9896 -2.1884 11 6 6.9773 0.3991 -1.0008 12 7 7.1532 -0.4071 -2.0248 13 14 7.5117 -0.1318 0.7087 14 1 6.3529 -0.7167 1.4301 15 1 8.5894 -1.1474 0.5973 16 1 8.0174 1.0466 1.4575 17 6 6.8177 3.7923 -0.0790 18 6 6.7098 4.5907 -1.2024 19 6 7.4073 5.7820 -1.2733 20 6 8.2193 6.1711 -0.2243 21 6 8.3313 5.3701 0.8968 22 6 7.6308 4.1807 0.9694 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 3.8567 0.6439 -0.8908 29 1 3.8574 0.6436 0.8892 30 1 7.5607 -1.2774 -1.8924 31 1 6.0778 4.2853 -2.0232 32 1 7.3201 6.4075 -2.1494 33 1 8.7664 7.1005 -0.2808 34 1 8.9660 5.6739 1.7162 35 1 7.7180 3.5552 1.8454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084264833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:07 Heat of formation + Delta-G solvation = -88.475407 kcal Electronic energy + Delta-G solvation = -18280.981972 eV Core-core repulsion = 15369.642825 eV Total energy + Delta-G solvation = -2911.339147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.98597 -38.84249 -36.52170 -35.59295 -33.38277 -32.45950 -31.63507 -29.43794 -27.30459 -25.08753 -24.00308 -23.36509 -21.87896 -19.18420 -18.40118 -17.64939 -17.58992 -17.08670 -16.56288 -16.34125 -15.97223 -15.74103 -15.13091 -15.05161 -14.74890 -14.58077 -14.16560 -13.90880 -13.58349 -13.25741 -13.04136 -12.91242 -12.72819 -12.39109 -12.15734 -12.02491 -11.96250 -11.80969 -11.53235 -11.09188 -10.70489 -10.63831 -9.68250 -9.64801 -8.96539 -8.40084 -6.43542 0.46411 0.63692 1.08121 1.31369 1.36608 1.46679 1.90325 2.29049 2.89340 3.01024 3.09843 3.19001 3.99018 4.00954 4.09737 4.15958 4.31680 4.37182 4.43425 4.51107 4.52746 4.53123 4.80398 4.81599 4.82112 4.88720 5.09391 5.12942 5.30869 5.40424 5.70512 5.74425 5.88907 6.08702 6.22185 6.28895 6.54939 7.14688 8.76532 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.007644 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.922998 B = 3662.091252 C = 4692.263827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.419 6.419 3 C 0.085 3.915 4 C -0.442 4.442 5 S 1.283 4.717 6 O -0.907 6.907 7 C -0.250 4.250 8 H 0.117 0.883 9 C -0.510 4.510 10 H 0.013 0.987 11 C 0.017 3.983 12 N -0.945 5.945 13 Si 0.928 3.072 14 H -0.238 1.238 15 H -0.292 1.292 16 H -0.218 1.218 17 C -0.057 4.057 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.132 4.132 21 C -0.116 4.116 22 C -0.130 4.130 23 H 0.040 0.960 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.135 0.865 30 H 0.269 0.731 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 8.201 14.887 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.339 6.339 3 C 0.008 3.992 4 C -0.579 4.579 5 S 1.486 4.514 6 O -0.903 6.903 7 C -0.367 4.367 8 H 0.135 0.865 9 C -0.549 4.549 10 H 0.032 0.968 11 C -0.183 4.183 12 N -0.583 5.583 13 Si 0.748 3.252 14 H -0.161 1.161 15 H -0.219 1.219 16 H -0.141 1.141 17 C -0.059 4.059 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.133 4.133 22 C -0.149 4.149 23 H 0.059 0.941 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.757 8.746 14.803 18.132 hybrid contribution 0.827 -1.953 -2.646 3.391 sum -4.930 6.794 12.157 14.773 Atomic orbital electron populations 1.23004 0.79347 1.03994 1.01219 1.87917 1.21777 1.28595 1.95621 1.22108 0.90493 0.85047 1.01538 1.27689 1.01734 1.20595 1.07835 1.68722 0.88113 0.84597 1.09968 1.92906 1.80005 1.63952 1.53406 1.24519 1.13376 0.96880 1.01975 0.86523 1.20576 1.43018 1.00459 0.90853 0.96826 1.26188 0.94084 0.95768 1.02253 1.70077 1.44273 1.09797 1.34176 0.85989 0.80006 0.79832 0.79327 1.16140 1.21862 1.14085 1.19783 0.98201 0.93488 0.94411 1.21078 1.00557 0.96079 0.97773 1.21296 0.97825 0.95968 1.00091 1.21404 0.98992 1.01099 0.93510 1.21493 0.99115 0.93851 0.98878 1.21391 0.97092 0.97866 0.98550 0.94128 0.88406 0.91410 0.88025 0.94914 0.92323 0.84646 0.92217 0.90148 0.85698 0.83122 0.82386 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -13.95 10.70 -148.98 -1.59 -15.54 16 3 C 0.09 2.73 5.95 71.98 0.43 3.16 16 4 C -0.44 -16.77 5.93 71.98 0.43 -16.35 16 5 S 1.28 48.23 12.58 -56.49 -0.71 47.52 16 6 O -0.91 -45.20 16.57 -148.98 -2.47 -47.67 16 7 C -0.25 -10.81 2.42 29.10 0.07 -10.74 16 8 H 0.12 4.33 4.52 -2.39 -0.01 4.32 16 9 C -0.51 -29.11 7.53 25.60 0.19 -28.92 16 10 H 0.01 0.93 7.75 -2.91 -0.02 0.91 16 11 C 0.02 0.95 5.47 84.66 0.46 1.42 16 12 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 13 Si 0.93 39.81 26.95 68.60 1.85 41.66 16 14 H -0.24 -9.12 7.11 99.48 0.71 -8.42 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 16 H -0.22 -7.95 6.80 99.48 0.68 -7.27 16 17 C -0.06 -2.32 4.77 -19.87 -0.09 -2.42 16 18 C -0.14 -6.01 8.53 22.27 0.19 -5.82 16 19 C -0.13 -4.73 10.05 22.27 0.22 -4.51 16 20 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 21 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 22 C -0.13 -4.17 9.67 22.27 0.22 -3.95 16 23 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 2.87 7.71 -2.39 -0.02 2.86 16 29 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 30 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 31 H 0.08 4.25 6.74 -2.91 -0.02 4.23 16 32 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.14 3.77 7.95 -2.92 -0.02 3.74 16 Total: -1.00 -83.99 309.17 2.22 -81.77 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 1.04 Total: 24.48 kcal Atomic # 6 Polarization: -76.53 SS G_CDS: 3.81 Total: -72.72 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.30 Total: -59.50 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -4.06 Total: -63.21 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.85 Total: 41.66 kcal Atomic # 16 Polarization: 48.23 SS G_CDS: -0.71 Total: 47.52 kcal Total: -83.99 2.22 -81.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.704 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds