Wall clock time and date at job start Mon Mar 30 2020 08:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99789 * 2 1 4 4 C 1.53000 * 109.47307 * 179.97438 * 3 2 1 5 5 S 1.81394 * 109.47282 * 180.02562 * 4 3 2 6 6 O 1.42103 * 109.47345 * 63.61356 * 5 4 3 7 7 C 1.81405 * 103.00117 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.46767 * 64.99511 * 7 5 4 9 9 C 1.50700 * 109.47105 * 305.00016 * 7 5 4 10 10 H 1.08000 * 120.00051 * 324.85948 * 9 7 5 11 11 C 1.37880 * 120.00144 * 144.85748 * 9 7 5 12 12 N 1.31513 * 119.99654 * 6.14409 * 11 9 7 13 13 Si 1.86798 * 120.00184 * 186.14227 * 11 9 7 14 14 H 1.48494 * 109.47280 * 90.00030 * 13 11 9 15 15 H 1.48498 * 109.47082 * 210.00212 * 13 11 9 16 16 H 1.48505 * 109.46867 * 330.00130 * 13 11 9 17 17 C 1.50694 * 109.47411 * 184.99669 * 7 5 4 18 18 C 1.38230 * 120.00542 * 243.29420 * 17 7 5 19 19 C 1.38228 * 120.00551 * 179.97438 * 18 17 7 20 20 C 1.38240 * 119.99759 * 359.97438 * 19 18 17 21 21 C 1.38237 * 120.00203 * 0.07248 * 20 19 18 22 22 C 1.38235 * 119.99451 * 359.90378 * 21 20 19 23 23 H 1.09004 * 109.47079 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47303 * 299.99441 * 1 2 3 25 25 H 1.08998 * 109.47079 * 60.00431 * 1 2 3 26 26 H 1.09000 * 109.47107 * 59.99955 * 3 2 1 27 27 H 1.09002 * 109.47279 * 300.00021 * 3 2 1 28 28 H 1.09000 * 109.46951 * 60.00010 * 4 3 2 29 29 H 1.09002 * 109.47091 * 300.00287 * 4 3 2 30 30 H 0.97006 * 119.99804 * 179.97438 * 12 11 9 31 31 H 1.08002 * 119.99505 * 359.97438 * 18 17 7 32 32 H 1.08001 * 120.00527 * 179.71869 * 19 18 17 33 33 H 1.08005 * 120.00060 * 179.97438 * 20 19 18 34 34 H 1.07989 * 120.00297 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.99732 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 16 4.2731 2.8419 0.0014 6 8 3.9213 3.5165 1.2016 7 6 6.0539 2.4959 0.0029 8 1 6.3284 2.0003 -0.9283 9 6 6.3905 1.6000 1.1670 10 1 5.8591 1.7058 2.1012 11 6 7.3770 0.6452 1.0393 12 7 8.1061 0.5951 -0.0540 13 14 7.6778 -0.5773 2.4194 14 1 6.8326 -1.7798 2.2085 15 1 9.1090 -0.9733 2.4266 16 1 7.3311 0.0496 3.7202 17 6 6.8169 3.7894 0.1274 18 6 7.6494 4.2021 -0.8960 19 6 8.3489 5.3889 -0.7820 20 6 8.2155 6.1633 0.3553 21 6 7.3837 5.7502 1.3792 22 6 6.6839 4.5636 1.2649 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8574 0.6437 -0.8891 29 1 3.8567 0.6440 0.8908 30 1 8.8004 -0.0764 -0.1437 31 1 7.7533 3.5973 -1.7847 32 1 9.0028 5.7091 -1.5797 33 1 8.7623 7.0904 0.4446 34 1 7.2798 6.3549 2.2678 35 1 6.0337 4.2410 2.0647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084264836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:16 Heat of formation + Delta-G solvation = -66.194435 kcal Electronic energy + Delta-G solvation = -18206.340300 eV Core-core repulsion = 15295.967329 eV Total energy + Delta-G solvation = -2910.372971 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.31420 -37.63215 -34.64198 -33.72046 -31.21595 -30.98715 -30.01469 -27.29289 -26.25732 -23.52694 -22.59942 -21.66998 -20.33720 -16.84157 -16.73531 -16.25759 -15.93523 -15.75622 -15.00035 -14.77780 -14.29839 -14.17291 -13.66727 -13.47919 -13.14855 -12.66010 -12.38338 -12.28833 -11.81936 -11.63557 -11.45429 -11.19881 -11.04808 -10.95799 -10.78379 -10.50411 -10.28708 -10.05776 -9.70028 -9.48197 -9.03416 -8.67278 -8.06122 -7.91935 -7.13859 -6.26147 -4.32251 2.10421 2.27244 2.68540 3.19205 3.26374 3.30877 3.65081 4.15611 4.26185 4.74069 4.78760 5.09402 5.25218 5.32390 5.44287 5.54130 5.64766 5.67290 5.70183 5.73739 5.83559 6.14395 6.27799 6.42553 6.49133 6.63728 6.76478 6.85610 7.07467 7.29171 7.36660 7.36937 7.59146 7.71740 7.79769 7.98882 8.70137 9.30208 10.79599 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.014766 B = 0.007625 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.839503 B = 3671.439920 C = 4969.804507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.085 3.915 4 C -0.433 4.433 5 S 1.189 4.811 6 O -0.863 6.863 7 C -0.204 4.204 8 H 0.114 0.886 9 C -0.517 4.517 10 H 0.062 0.938 11 C 0.080 3.920 12 N -0.870 5.870 13 Si 0.891 3.109 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.019 4.019 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.148 4.148 21 C -0.131 4.131 22 C -0.108 4.108 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.266 0.734 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 4.215 -5.654 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.308 6.308 3 C 0.008 3.992 4 C -0.568 4.568 5 S 1.393 4.607 6 O -0.858 6.858 7 C -0.323 4.323 8 H 0.131 0.869 9 C -0.555 4.555 10 H 0.080 0.920 11 C -0.127 4.127 12 N -0.506 5.506 13 Si 0.718 3.282 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.021 4.021 18 C -0.131 4.131 19 C -0.149 4.149 20 C -0.167 4.167 21 C -0.149 4.149 22 C -0.127 4.127 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.703 4.803 -5.737 10.739 hybrid contribution 1.011 -1.801 2.621 3.337 sum -6.692 3.002 -3.116 7.969 Atomic orbital electron populations 1.22714 0.81921 1.02335 0.99771 1.87966 1.18921 1.28598 1.95351 1.22098 0.92637 0.84473 1.00007 1.27605 0.98824 1.21454 1.08960 1.69590 0.92113 0.86013 1.12949 1.92998 1.80159 1.61377 1.51296 1.24001 1.07626 0.95385 1.05335 0.86863 1.20733 1.21832 1.15359 0.97613 0.92005 1.24946 0.94810 0.97150 0.95815 1.69904 1.20052 1.34062 1.26568 0.86585 0.77666 0.81450 0.82535 1.20110 1.20863 1.19685 1.19966 0.96306 0.93235 0.92640 1.21042 0.97292 0.95558 0.99233 1.20966 1.00371 0.95796 0.97784 1.20863 1.00854 0.99970 0.95003 1.20989 0.98243 0.97238 0.98435 1.21222 0.99207 0.94020 0.98223 0.90001 0.94369 0.94167 0.93353 0.92846 0.86735 0.88065 0.92423 0.86303 0.87296 0.87576 0.87490 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -6.39 10.70 -35.23 -0.38 -6.77 16 3 C 0.09 1.36 5.95 37.16 0.22 1.58 16 4 C -0.43 -7.87 5.90 37.16 0.22 -7.65 16 5 S 1.19 22.17 12.61 -107.50 -1.36 20.81 16 6 O -0.86 -20.20 16.40 -35.23 -0.58 -20.78 16 7 C -0.20 -4.57 2.54 -29.04 -0.07 -4.64 16 8 H 0.11 2.55 7.13 -51.92 -0.37 2.18 16 9 C -0.52 -13.51 6.88 -34.44 -0.24 -13.75 16 10 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 11 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 12 N -0.87 -23.38 12.85 55.43 0.71 -22.66 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.02 -0.41 4.77 -104.63 -0.50 -0.91 16 18 C -0.11 -2.23 9.67 -39.59 -0.38 -2.62 16 19 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 20 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 21 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 22 C -0.11 -2.41 8.50 -39.58 -0.34 -2.75 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 29 H 0.10 2.17 7.65 -51.92 -0.40 1.77 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.12 2.22 7.95 -52.49 -0.42 1.81 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 34 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.12 3.01 6.91 -52.49 -0.36 2.65 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -32.48 313.03 -8.07 -40.55 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.90 Total: 3.88 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: -1.27 Total: -35.95 kcal Atomic # 7 Polarization: -23.38 SS G_CDS: 0.71 Total: -22.66 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.96 Total: -27.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 22.17 SS G_CDS: -1.36 Total: 20.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.48 -8.07 -40.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084264836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.645 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds