Wall clock time and date at job start Mon Mar 30 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38249 * 119.44788 * 2 1 4 4 C 1.38559 * 119.28874 * 179.71994 * 3 2 1 5 5 Cl 1.73600 * 120.87580 * 180.27237 * 4 3 2 6 6 C 1.40194 * 118.24897 * 0.51528 * 4 3 2 7 7 C 1.47770 * 120.57061 * 179.75469 * 6 4 3 8 8 O 1.21563 * 120.00150 * 359.72660 * 7 6 4 9 9 N 1.34777 * 119.99858 * 179.45133 * 7 6 4 10 10 C 1.46499 * 120.00195 * 180.27937 * 9 7 6 11 11 H 1.09007 * 109.46737 * 324.99949 * 10 9 7 12 12 C 1.52998 * 109.47145 * 84.99285 * 10 9 7 13 13 C 1.50694 * 109.47284 * 205.00040 * 10 9 7 14 14 H 1.08005 * 120.00250 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00130 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99947 * 179.97438 * 15 13 10 18 18 H 1.48491 * 109.47082 * 59.99837 * 17 15 13 19 19 H 1.48505 * 109.47097 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47219 * 299.99513 * 17 15 13 21 21 C 1.39511 * 118.85375 * 359.48813 * 6 4 3 22 22 N 1.31688 * 120.58035 * 0.24576 * 21 6 4 23 23 H 1.08995 * 109.47240 * 270.02208 * 1 2 3 24 24 H 1.09000 * 109.47541 * 30.02601 * 1 2 3 25 25 H 1.08999 * 109.47300 * 150.02521 * 1 2 3 26 26 H 1.08001 * 120.35458 * 0.02562 * 3 2 1 27 27 H 0.97000 * 119.99736 * 0.27209 * 9 7 6 28 28 H 1.09007 * 109.47256 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.47335 * 300.00029 * 12 10 9 30 30 H 1.08999 * 109.47045 * 60.00647 * 12 10 9 31 31 H 0.96999 * 119.99893 * 179.97438 * 16 15 13 32 32 H 1.08000 * 119.71332 * 180.27382 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.2039 0.0000 4 6 3.5722 1.2000 0.0059 5 17 4.4672 2.6875 0.0132 6 6 4.2324 -0.0367 0.0006 7 6 5.7087 -0.1007 0.0010 8 8 6.3615 0.9248 0.0010 9 7 6.3314 -1.2959 0.0071 10 6 7.7950 -1.3594 0.0137 11 1 8.1970 -0.5356 -0.5763 12 6 8.3036 -1.2517 1.4526 13 6 8.2438 -2.6692 -0.5812 14 1 7.5119 -3.3833 -0.9290 15 6 9.5887 -2.9560 -0.6814 16 7 10.4799 -2.0863 -0.2583 17 14 10.1449 -4.5800 -1.4182 18 1 9.6505 -4.6852 -2.8145 19 1 11.6285 -4.6443 -1.4116 20 1 9.5978 -5.7019 -0.6135 21 6 3.4714 -1.2061 0.0005 22 7 2.1558 -1.1492 0.0005 23 1 -0.3633 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6434 2.1373 0.0004 27 1 5.8105 -2.1142 0.0071 28 1 9.3927 -1.2985 1.4575 29 1 7.9791 -0.3042 1.8828 30 1 7.9017 -2.0754 2.0426 31 1 11.4260 -2.2883 -0.3285 32 1 3.9656 -2.1663 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088109448.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:06 Heat of formation + Delta-G solvation = -29.971780 kcal Electronic energy + Delta-G solvation = -17721.767114 eV Core-core repulsion = 14707.380825 eV Total energy + Delta-G solvation = -3014.386289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.73473 -40.08103 -37.74934 -36.71652 -34.62904 -33.87492 -33.25023 -31.04376 -28.77670 -27.33165 -25.05060 -24.27478 -22.72349 -21.37055 -19.64740 -18.17409 -17.94892 -17.08635 -16.88100 -16.27391 -16.15373 -15.60157 -15.24745 -14.92274 -14.61941 -14.36210 -13.81679 -13.58488 -13.41907 -13.13260 -12.97980 -12.93534 -12.85343 -12.73966 -12.32068 -12.23817 -12.07595 -11.12521 -11.02638 -10.62334 -10.59571 -10.43292 -10.20663 -9.75282 -8.16800 -6.34379 -0.55770 -0.13396 0.90051 1.46584 1.48499 1.56185 1.85588 2.28005 2.50680 2.64087 3.09573 3.13993 3.46870 3.67113 3.76530 4.10247 4.25304 4.46781 4.67204 4.78041 4.83122 4.91706 4.92829 5.08734 5.09887 5.41937 5.44372 5.57794 5.67173 5.88407 6.08732 6.67723 6.71623 6.86693 7.29779 7.45647 8.89385 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.004919 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.425899 B = 5691.162028 C = 6482.598002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.160 3.840 3 C -0.167 4.167 4 C 0.041 3.959 5 Cl -0.032 7.032 6 C -0.204 4.204 7 C 0.541 3.459 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.273 3.727 11 H 0.003 0.997 12 C -0.133 4.133 13 C -0.548 4.548 14 H 0.075 0.925 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.972 3.028 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.263 1.263 21 C 0.158 3.842 22 N -0.496 5.496 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.182 0.818 27 H 0.403 0.597 28 H 0.068 0.932 29 H 0.012 0.988 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.437 3.056 0.958 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.023 3.977 3 C -0.187 4.187 4 C 0.006 3.994 5 Cl -0.002 7.002 6 C -0.210 4.210 7 C 0.327 3.673 8 O -0.447 6.447 9 N -0.346 5.346 10 C 0.170 3.830 11 H 0.020 0.980 12 C -0.192 4.192 13 C -0.586 4.586 14 H 0.093 0.907 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.188 1.188 21 C 0.000 4.000 22 N -0.206 5.206 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.104 0.896 26 H 0.200 0.800 27 H 0.239 0.761 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.139 3.162 0.978 20.409 hybrid contribution 1.460 0.039 -0.286 1.488 sum -18.679 3.201 0.692 18.964 Atomic orbital electron populations 1.20951 0.84565 1.05464 1.05035 1.22233 0.99437 0.86703 0.89351 1.22248 0.90568 1.02285 1.03614 1.21707 0.93448 0.87817 0.96453 1.98429 1.75561 1.30535 1.95723 1.20951 0.94407 0.95060 1.10554 1.18375 0.87235 0.84315 0.77352 1.90792 1.67646 1.34658 1.51580 1.46200 1.09032 1.07215 1.72166 1.18385 0.74946 0.96266 0.93404 0.97950 1.21897 1.02940 0.97002 0.97364 1.21500 0.92862 1.02481 1.41779 0.90704 1.25782 0.96524 1.00717 0.95390 1.70046 1.01782 1.36874 1.46799 0.85394 0.76833 0.79123 0.78964 1.19621 1.21267 1.18781 1.23244 0.89266 0.97297 0.90237 1.67674 1.08934 1.29918 1.14097 0.88081 0.87658 0.89597 0.80027 0.76100 0.91361 0.96928 0.94031 0.92538 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.16 71.24 0.72 -0.30 16 2 C 0.16 3.07 6.78 42.54 0.29 3.36 16 3 C -0.17 -3.40 9.54 22.35 0.21 -3.18 16 4 C 0.04 1.20 6.40 22.82 0.15 1.34 16 5 Cl -0.03 -1.02 26.25 -2.72 -0.07 -1.09 16 6 C -0.20 -6.60 5.89 -19.97 -0.12 -6.72 16 7 C 0.54 22.53 7.74 86.76 0.67 23.21 16 8 O -0.57 -27.79 13.81 -3.91 -0.05 -27.84 16 9 N -0.70 -29.26 5.02 -449.05 -2.26 -31.52 16 10 C 0.27 14.18 2.56 44.24 0.11 14.29 16 11 H 0.00 0.16 7.58 -2.38 -0.02 0.14 16 12 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 13 C -0.55 -28.79 8.73 25.60 0.22 -28.57 16 14 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 15 C 0.02 0.86 5.30 84.66 0.45 1.31 16 16 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 17 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 C 0.16 4.22 10.71 85.02 0.91 5.13 16 22 N -0.50 -11.90 10.25 -182.88 -1.88 -13.77 16 23 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 26 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 27 H 0.40 14.02 6.61 -92.71 -0.61 13.41 16 28 H 0.07 3.79 6.07 -2.38 -0.01 3.78 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.18 4.16 6.42 -2.91 -0.02 4.14 16 Total: -1.00 -68.35 292.03 2.85 -65.50 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.54 Total: 13.45 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 4.29 Total: 3.75 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -3.89 Total: -97.53 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.05 Total: -27.84 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -68.35 2.85 -65.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088109448.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.530 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds