Wall clock time and date at job start Mon Mar 30 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.44838 * 2 1 4 4 C 1.38562 * 119.28752 * 180.02562 * 3 2 1 5 5 Cl 1.73602 * 120.87324 * 179.97438 * 4 3 2 6 6 C 1.40181 * 118.25286 * 0.02562 * 4 3 2 7 7 C 1.47765 * 120.57521 * 180.02562 * 6 4 3 8 8 O 1.21566 * 120.00061 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00097 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99732 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47381 * 35.00069 * 10 9 7 12 12 C 1.53006 * 109.47249 * 274.99921 * 10 9 7 13 13 C 1.50699 * 109.46939 * 155.00269 * 10 9 7 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00161 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99895 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00268 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46809 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46948 * 120.00386 * 17 15 13 20 20 H 1.48497 * 109.47378 * 240.00673 * 17 15 13 21 21 C 1.39522 * 118.85293 * 0.27398 * 6 4 3 22 22 N 1.31684 * 120.57320 * 359.44969 * 21 6 4 23 23 H 1.09005 * 109.47052 * 89.99655 * 1 2 3 24 24 H 1.09004 * 109.47438 * 209.99520 * 1 2 3 25 25 H 1.08998 * 109.46992 * 330.00237 * 1 2 3 26 26 H 1.07999 * 120.35602 * 359.97427 * 3 2 1 27 27 H 0.96998 * 119.99903 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 29 29 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 30 30 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 31 31 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 32 32 H 1.08003 * 119.70819 * 179.70860 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.2038 0.0000 4 6 3.5723 1.1999 -0.0005 5 17 4.4673 2.6874 -0.0012 6 6 4.2324 -0.0368 -0.0016 7 6 5.7086 -0.1008 -0.0017 8 8 6.3615 0.9247 -0.0012 9 7 6.3313 -1.2961 -0.0022 10 6 7.7950 -1.3595 -0.0017 11 1 8.1942 -0.5346 0.5885 12 6 8.3105 -1.2551 -1.4385 13 6 8.2408 -2.6681 0.5981 14 1 7.5074 -3.3811 0.9446 15 6 9.5852 -2.9553 0.7044 16 7 10.4784 -2.0869 0.2829 17 14 10.1379 -4.5771 1.4485 18 1 8.9472 -5.3723 1.8424 19 1 10.9307 -5.3360 0.4480 20 1 10.9752 -4.3125 2.6460 21 6 3.4713 -1.2061 -0.0079 22 7 2.1558 -1.1492 -0.0019 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6435 2.1373 -0.0004 27 1 5.8104 -2.1143 -0.0029 28 1 7.9880 -0.3085 -1.8723 29 1 9.3994 -1.3027 -1.4381 30 1 7.9113 -2.0800 -2.0286 31 1 11.4242 -2.2887 0.3581 32 1 3.9656 -2.1664 -0.0136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088109449.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:12 Heat of formation + Delta-G solvation = -30.063680 kcal Electronic energy + Delta-G solvation = -17721.980962 eV Core-core repulsion = 14707.590688 eV Total energy + Delta-G solvation = -3014.390274 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.73526 -40.08094 -37.74908 -36.71790 -34.63007 -33.87600 -33.25049 -31.04391 -28.77614 -27.33629 -25.05084 -24.27560 -22.72456 -21.37094 -19.64846 -18.17450 -17.95513 -17.08989 -16.88144 -16.27683 -16.14838 -15.59616 -15.24691 -14.92396 -14.62346 -14.36562 -13.82273 -13.58968 -13.41978 -13.13157 -12.97726 -12.93620 -12.86395 -12.75502 -12.30564 -12.24587 -12.05745 -11.10427 -11.02427 -10.63925 -10.59834 -10.43453 -10.20628 -9.75253 -8.17347 -6.34684 -0.55750 -0.13380 0.90059 1.45436 1.46641 1.58525 1.85588 2.27955 2.50360 2.64093 3.09567 3.13703 3.46919 3.67125 3.76525 4.10260 4.25325 4.46794 4.67207 4.78025 4.83093 4.91756 4.92885 5.08703 5.09874 5.41940 5.44377 5.58037 5.67155 5.88266 6.08734 6.67782 6.71870 6.86608 7.29678 7.45526 8.89247 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.004920 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.565258 B = 5690.146744 C = 6480.091073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.160 3.840 3 C -0.167 4.167 4 C 0.041 3.959 5 Cl -0.032 7.032 6 C -0.204 4.204 7 C 0.541 3.459 8 O -0.566 6.566 9 N -0.697 5.697 10 C 0.272 3.728 11 H 0.003 0.997 12 C -0.133 4.133 13 C -0.546 4.546 14 H 0.075 0.925 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.972 3.028 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.285 1.285 21 C 0.158 3.842 22 N -0.496 5.496 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.182 0.818 27 H 0.403 0.597 28 H 0.012 0.988 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.467 3.069 -1.004 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.023 3.977 3 C -0.187 4.187 4 C 0.006 3.994 5 Cl -0.002 7.002 6 C -0.210 4.210 7 C 0.327 3.673 8 O -0.447 6.447 9 N -0.346 5.346 10 C 0.169 3.831 11 H 0.021 0.979 12 C -0.192 4.192 13 C -0.584 4.584 14 H 0.093 0.907 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.797 3.203 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.211 1.211 21 C 0.000 4.000 22 N -0.206 5.206 23 H 0.119 0.881 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.200 0.800 27 H 0.239 0.761 28 H 0.031 0.969 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -20.178 3.172 -1.016 20.451 hybrid contribution 1.485 0.047 0.282 1.513 sum -18.693 3.219 -0.734 18.982 Atomic orbital electron populations 1.20954 0.84566 1.05460 1.05036 1.22229 0.99437 0.86701 0.89354 1.22246 0.90567 1.02286 1.03616 1.21705 0.93448 0.87817 0.96452 1.98430 1.75560 1.30535 1.95725 1.20950 0.94409 0.95060 1.10554 1.18375 0.87233 0.84314 0.77352 1.90793 1.67645 1.34661 1.51577 1.46200 1.09027 1.07214 1.72170 1.18397 0.74949 0.96288 0.93425 0.97931 1.21898 1.02952 0.97022 0.97347 1.21560 0.92849 1.02537 1.41472 0.90698 1.25781 0.96533 1.00697 0.95443 1.70057 1.01712 1.36845 1.46913 0.85290 0.78469 0.78797 0.77733 1.18275 1.20449 1.21075 1.23246 0.89263 0.97295 0.90235 1.67668 1.08942 1.29925 1.14095 0.88075 0.89596 0.87665 0.80027 0.76100 0.96916 0.91360 0.94020 0.92551 0.79970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.16 71.24 0.72 -0.30 16 2 C 0.16 3.07 6.78 42.54 0.29 3.36 16 3 C -0.17 -3.39 9.54 22.35 0.21 -3.18 16 4 C 0.04 1.20 6.40 22.82 0.15 1.34 16 5 Cl -0.03 -1.02 26.25 -2.72 -0.07 -1.09 16 6 C -0.20 -6.60 5.89 -19.98 -0.12 -6.72 16 7 C 0.54 22.52 7.74 86.76 0.67 23.19 16 8 O -0.57 -27.77 13.81 -3.92 -0.05 -27.82 16 9 N -0.70 -29.25 5.02 -449.03 -2.26 -31.50 16 10 C 0.27 14.14 2.56 44.25 0.11 14.25 16 11 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 12 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 13 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 14 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 15 C 0.02 0.83 5.30 84.66 0.45 1.28 16 16 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 17 Si 0.97 41.78 29.54 68.60 2.03 43.80 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.16 4.22 10.71 85.02 0.91 5.13 16 22 N -0.50 -11.90 10.25 -182.88 -1.87 -13.78 16 23 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.09 0.86 8.14 -2.38 -0.02 0.85 16 25 H 0.10 0.54 8.07 -2.39 -0.02 0.52 16 26 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 27 H 0.40 14.03 6.60 -92.71 -0.61 13.42 16 28 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.18 4.16 6.42 -2.91 -0.02 4.14 16 Total: -1.00 -68.39 292.02 2.85 -65.54 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.54 Total: 13.27 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.29 Total: 3.78 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.89 Total: -97.49 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -68.39 2.85 -65.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088109449.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.480 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds