Wall clock time and date at job start Mon Mar 30 2020 07:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31519 * 119.99631 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00377 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.46925 * 90.00223 * 9 7 5 11 11 H 1.48497 * 109.47251 * 210.00352 * 9 7 5 12 12 H 1.48507 * 109.46917 * 330.00578 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21565 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.47766 * 120.00151 * 179.97438 * 14 13 3 17 17 C 1.39555 * 120.57178 * 359.97438 * 16 14 13 18 18 N 1.31664 * 120.57543 * 179.97438 * 17 16 14 19 19 C 1.31998 * 121.92335 * 359.97438 * 18 17 16 20 20 C 1.38205 * 121.10714 * 0.02562 * 19 18 17 21 21 C 1.38603 * 119.28605 * 359.74221 * 20 19 18 22 22 Cl 1.73602 * 120.87042 * 180.25737 * 21 20 19 23 23 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 25 25 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 26 26 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 27 27 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 28 28 H 0.97005 * 119.99726 * 179.97438 * 8 7 5 29 29 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 30 30 H 1.07998 * 119.71431 * 0.02562 * 17 16 14 31 31 H 1.07997 * 119.44315 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.35454 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 5.4540 0.8803 1.3362 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3260 2.2646 11 1 3.7941 0.2360 3.8755 12 1 1.7880 0.8094 2.6394 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3414 2.6319 -0.4323 16 6 0.0444 3.3254 -2.6295 17 6 0.9265 3.3701 -3.7099 18 7 0.5783 3.9587 -4.8350 19 6 -0.6042 4.5245 -4.9898 20 6 -1.5353 4.5238 -3.9685 21 6 -1.2207 3.9131 -2.7646 22 17 -2.3617 3.8822 -1.4566 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8770 0.4825 2.1132 29 1 2.2734 2.1265 -1.9965 30 1 1.9031 2.9173 -3.6227 31 1 -0.8479 4.9966 -5.9301 32 1 -2.4994 4.9899 -4.1085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088109477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:51 Heat of formation + Delta-G solvation = -19.250627 kcal Electronic energy + Delta-G solvation = -18213.954824 eV Core-core repulsion = 15200.033439 eV Total energy + Delta-G solvation = -3013.921385 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68788 -40.17745 -37.71888 -37.05971 -34.48399 -33.75015 -33.18835 -32.09482 -29.41498 -25.88014 -24.77256 -24.31204 -22.57378 -21.37915 -19.71810 -18.51446 -18.00523 -17.67620 -17.09763 -16.38612 -16.24991 -15.65810 -15.31101 -14.95704 -14.88514 -14.70979 -14.03961 -13.74976 -13.68956 -13.44592 -13.19335 -12.95777 -12.77376 -12.41421 -12.25252 -11.85090 -11.36015 -11.23588 -10.98607 -10.85556 -10.56904 -10.41065 -10.36512 -9.77593 -8.37428 -6.42943 -0.50905 -0.09710 0.93898 1.27670 1.36103 1.45461 1.89202 2.26281 2.29454 2.70208 2.98810 3.25015 3.54669 3.71032 3.78210 4.22094 4.24616 4.33038 4.42906 4.47685 4.54647 4.79128 4.87354 5.01430 5.12290 5.23343 5.36999 5.40234 5.52402 5.61886 6.13335 6.58548 6.70408 6.80708 7.18522 7.37118 8.77620 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.005920 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.116572 B = 4728.384807 C = 5380.554727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.253 3.747 4 H 0.026 0.974 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.934 3.066 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.693 5.693 14 C 0.545 3.455 15 O -0.549 6.549 16 C -0.196 4.196 17 C 0.149 3.851 18 N -0.498 5.498 19 C 0.140 3.860 20 C -0.164 4.164 21 C 0.037 3.963 22 Cl -0.031 7.031 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.270 0.730 29 H 0.404 0.596 30 H 0.177 0.823 31 H 0.213 0.787 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.962 5.612 -12.623 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.044 0.956 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.762 3.238 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.343 5.343 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.202 4.202 17 C -0.009 4.009 18 N -0.207 5.207 19 C -0.016 4.016 20 C -0.184 4.184 21 C 0.001 3.999 22 Cl -0.002 7.002 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.240 0.760 30 H 0.194 0.806 31 H 0.229 0.771 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.852 5.536 -12.404 20.127 hybrid contribution -0.194 -0.461 1.545 1.624 sum -15.047 5.074 -10.859 19.237 Atomic orbital electron populations 1.21751 0.95192 1.00477 1.01591 1.22208 0.95818 0.98406 1.01116 1.18813 0.93287 0.89641 0.83463 0.95591 1.21275 0.90248 1.38571 1.07022 0.92363 1.25512 0.95676 0.95866 0.99780 1.69976 1.10255 1.46127 1.30827 0.86068 0.79394 0.79988 0.78381 1.18576 1.22227 1.18364 1.45922 1.15156 1.55846 1.17392 1.18225 0.82347 0.78933 0.87346 1.90814 1.51512 1.59941 1.40578 1.20953 0.96369 1.05777 0.97101 1.23253 0.98799 0.92453 0.86420 1.67802 1.19801 1.09498 1.23640 1.23751 0.86644 0.91588 0.99613 1.22507 1.04183 1.00869 0.90829 1.21737 0.90314 0.96149 0.91661 1.98433 1.57693 1.96469 1.47569 0.92451 0.94268 0.92887 0.91246 0.93744 0.92103 0.75996 0.80593 0.77082 0.79885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.51 71.98 0.61 -4.46 16 2 C -0.14 -5.81 5.11 30.59 0.16 -5.66 16 3 C 0.25 11.66 1.83 44.24 0.08 11.74 16 4 H 0.03 1.35 6.63 -2.39 -0.02 1.33 16 5 C -0.53 -28.56 9.31 25.60 0.24 -28.33 16 6 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 7 C 0.03 1.76 5.45 84.65 0.46 2.22 16 8 N -0.93 -55.59 13.96 21.45 0.30 -55.29 16 9 Si 0.93 44.45 24.41 68.60 1.67 46.12 16 10 H -0.26 -11.65 6.83 99.48 0.68 -10.97 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 13 N -0.69 -26.49 4.98 -449.04 -2.23 -28.73 16 14 C 0.55 19.89 6.34 86.76 0.55 20.44 16 15 O -0.55 -22.85 11.28 -3.92 -0.04 -22.90 16 16 C -0.20 -5.64 5.89 -19.98 -0.12 -5.76 16 17 C 0.15 3.64 10.71 85.04 0.91 4.56 16 18 N -0.50 -10.74 10.34 -194.82 -2.02 -12.75 16 19 C 0.14 2.11 11.17 84.66 0.95 3.06 16 20 C -0.16 -2.69 9.92 22.35 0.22 -2.47 16 21 C 0.04 0.93 6.40 22.82 0.15 1.08 16 22 Cl -0.03 -0.87 26.25 -2.72 -0.07 -0.94 16 23 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 25 H 0.05 2.00 5.64 -2.38 -0.01 1.98 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.04 1.98 3.22 -2.38 -0.01 1.97 16 28 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 29 H 0.40 13.46 6.60 -92.71 -0.61 12.85 16 30 H 0.18 3.87 6.42 -2.91 -0.02 3.85 16 31 H 0.21 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -67.38 277.39 2.28 -65.10 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.47 Total: 12.95 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.21 Total: -3.56 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.95 Total: -96.77 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.04 Total: -22.90 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.12 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Total: -67.38 2.28 -65.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088109477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.845 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds