Wall clock time and date at job start Mon Mar 30 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48499 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47126 * 299.99984 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99708 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47270 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47551 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00195 * 179.97438 * 12 11 10 14 14 O 1.21563 * 119.99934 * 0.02562 * 13 12 11 15 15 C 1.47770 * 119.99858 * 180.27937 * 13 12 11 16 16 C 1.39551 * 120.57472 * 359.72262 * 15 13 12 17 17 N 1.31662 * 120.57668 * 180.02562 * 16 15 13 18 18 C 1.31998 * 121.92096 * 359.97438 * 17 16 15 19 19 C 1.38199 * 121.10928 * 0.02562 * 18 17 16 20 20 C 1.38604 * 119.28628 * 359.71430 * 19 18 17 21 21 Cl 1.73600 * 120.87102 * 180.28010 * 20 19 18 22 22 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47217 * 60.00012 * 9 7 2 24 24 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 25 25 H 1.09007 * 109.47300 * 60.00253 * 10 9 7 26 26 H 1.08997 * 109.47600 * 299.99716 * 10 9 7 27 27 H 1.08998 * 109.47059 * 60.00118 * 11 10 9 28 28 H 1.09002 * 109.47542 * 300.00553 * 11 10 9 29 29 H 0.97000 * 120.00069 * 0.02562 * 12 11 10 30 30 H 1.08000 * 119.71356 * 0.03157 * 16 15 13 31 31 H 1.08004 * 119.44658 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.35505 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4806 -4.9870 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9834 -7.3712 0.0015 14 8 0.7883 -7.5934 0.0024 15 6 2.9438 -8.4943 0.0071 16 6 4.3183 -8.2530 0.0057 17 7 5.1740 -9.2536 0.0102 18 6 4.7761 -10.5121 0.0167 19 6 3.4326 -10.8363 0.0185 20 6 2.4900 -9.8202 0.0195 21 17 0.7918 -10.1805 0.0291 22 1 -0.4851 0.8399 -0.0004 23 1 0.6249 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6042 0.8906 26 1 2.8721 -3.6043 -0.8894 27 1 0.8537 -5.0451 -0.8886 28 1 0.8541 -5.0446 0.8913 29 1 3.3863 -5.9232 0.0002 30 1 4.6833 -7.2365 0.0009 31 1 5.5128 -11.3019 0.0198 32 1 3.1207 -11.8703 0.0234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088109537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:49 Heat of formation + Delta-G solvation = -37.516432 kcal Electronic energy + Delta-G solvation = -16990.085202 eV Core-core repulsion = 13975.371753 eV Total energy + Delta-G solvation = -3014.713450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71939 -40.10560 -37.75945 -36.96837 -35.25239 -33.58288 -33.22228 -32.25690 -28.68081 -26.02844 -24.90180 -24.25765 -22.34495 -21.70110 -19.27215 -18.52409 -18.12103 -17.63850 -16.80263 -16.64431 -16.32437 -15.86266 -15.74259 -14.98993 -14.82610 -14.73940 -14.22768 -13.78557 -13.51768 -13.50613 -13.23596 -12.77437 -12.57850 -12.41403 -12.31931 -11.67184 -11.53636 -11.21254 -11.05614 -10.66061 -10.55358 -10.54927 -10.43729 -10.09563 -8.18915 -6.30174 -0.58599 -0.12874 0.88902 1.42520 1.42804 1.55899 1.73905 2.01506 2.43006 2.63679 3.15209 3.19597 3.48464 3.62042 3.70831 4.10887 4.22425 4.22617 4.38542 4.51662 4.56421 4.76655 4.95180 4.97437 5.18059 5.33174 5.37492 5.53402 5.71959 5.85407 6.22931 6.44037 6.67717 6.87881 7.10265 7.39625 8.93392 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.036190 B = 0.003290 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.518100 B = 8508.918089 C = 9256.652472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.132 3.868 12 N -0.707 5.707 13 C 0.550 3.450 14 O -0.556 6.556 15 C -0.200 4.200 16 C 0.154 3.846 17 N -0.498 5.498 18 C 0.144 3.856 19 C -0.165 4.165 20 C 0.036 3.964 21 Cl -0.034 7.034 22 H 0.263 0.737 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.414 0.586 30 H 0.188 0.812 31 H 0.211 0.789 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 -23.524 0.046 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.141 4.141 11 C 0.008 3.992 12 N -0.359 5.359 13 C 0.336 3.664 14 O -0.435 6.435 15 C -0.206 4.206 16 C -0.004 4.004 17 N -0.207 5.207 18 C -0.012 4.012 19 C -0.185 4.185 20 C 0.000 4.000 21 Cl -0.004 7.004 22 H 0.071 0.929 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.251 0.749 30 H 0.205 0.795 31 H 0.228 0.772 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.453 -23.403 0.046 26.055 hybrid contribution -1.038 1.022 -0.001 1.457 sum 10.415 -22.381 0.045 24.685 Atomic orbital electron populations 1.70115 1.07947 1.27704 1.51853 1.26020 0.95730 1.03559 0.94853 0.85374 0.79274 0.78686 0.77551 1.18093 1.20678 1.20668 1.21721 0.93805 0.91981 1.50191 0.91427 1.18948 0.94468 0.92965 0.95112 1.21615 0.98487 0.91630 1.02350 1.21278 0.91784 0.85072 1.01037 1.45854 1.11303 1.04673 1.74089 1.18296 0.87962 0.83279 0.76846 1.90853 1.17312 1.84878 1.50445 1.20862 0.96124 0.92996 1.10598 1.23367 0.86342 1.00482 0.90206 1.67825 1.38840 1.00942 1.13098 1.23746 0.94353 0.94058 0.89031 1.22510 0.92953 1.00933 1.02134 1.21787 0.87809 0.93813 0.96580 1.98445 1.11945 1.94349 1.95700 0.92855 0.98932 0.98926 0.91152 0.91141 0.92871 0.92861 0.74850 0.79530 0.77198 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.29 21.44 0.28 -56.73 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.51 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.13 4.52 5.67 86.38 0.49 5.01 16 12 N -0.71 -18.91 5.51 -466.05 -2.57 -21.47 16 13 C 0.55 16.07 7.78 86.76 0.67 16.74 16 14 O -0.56 -20.51 14.15 -3.91 -0.06 -20.57 16 15 C -0.20 -4.51 5.89 -19.98 -0.12 -4.62 16 16 C 0.15 2.68 10.71 85.04 0.91 3.59 16 17 N -0.50 -8.02 10.34 -194.82 -2.02 -10.04 16 18 C 0.14 1.57 11.17 84.66 0.95 2.51 16 19 C -0.17 -2.09 9.92 22.35 0.22 -1.87 16 20 C 0.04 0.75 6.40 22.82 0.15 0.89 16 21 Cl -0.03 -0.84 26.25 -2.72 -0.07 -0.91 16 22 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 26 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.41 8.07 6.54 -92.71 -0.61 7.46 16 30 H 0.19 2.30 6.42 -2.91 -0.02 2.29 16 31 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -72.63 296.73 2.42 -70.21 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 0.54 Total: 3.30 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 4.28 Total: -9.39 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -4.30 Total: -88.24 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.06 Total: -20.57 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.07 Total: -0.91 kcal Total: -72.63 2.42 -70.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088109537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.697 kcal (2) G-P(sol) polarization free energy of solvation -72.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds