Wall clock time and date at job start Mon Mar 30 2020 08:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3 14 14 C 1.38235 * 119.99842 * 299.73144 * 13 2 1 15 15 C 1.38242 * 119.99819 * 179.80776 * 14 13 2 16 16 C 1.38229 * 120.00284 * 0.41566 * 15 14 13 17 17 S 1.76197 * 120.00454 * 179.79178 * 16 15 14 18 18 C 1.81399 * 104.44860 * 270.02246 * 17 16 15 19 19 O 1.42106 * 104.27390 * 26.08904 * 17 16 15 20 20 O 1.42093 * 104.28138 * 153.94991 * 17 16 15 21 21 C 1.38237 * 119.99779 * 359.81436 * 16 15 14 22 22 C 1.38235 * 120.00262 * 119.99677 * 13 2 1 23 23 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 26 26 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 27 27 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.08005 * 120.00098 * 359.97438 * 14 13 2 30 30 H 1.08006 * 119.99680 * 180.20616 * 15 14 13 31 31 H 1.09001 * 109.47256 * 59.99887 * 18 17 16 32 32 H 1.08995 * 109.47333 * 179.97438 * 18 17 16 33 33 H 1.09003 * 109.47484 * 299.99836 * 18 17 16 34 34 H 1.08000 * 119.99892 * 179.97438 * 21 16 15 35 35 H 1.07997 * 119.99744 * 359.97438 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.0302 0.6771 5.3142 11 1 2.0091 -0.1278 6.4612 12 1 2.1024 1.9297 5.1806 13 6 2.0324 -0.7103 -1.2304 14 6 1.7030 -2.0354 -1.4464 15 6 2.1607 -2.6859 -2.5771 16 6 2.9547 -2.0139 -3.4874 17 16 3.5425 -2.8445 -4.9258 18 6 5.1280 -3.5640 -4.4168 19 8 2.5826 -3.8665 -5.1571 20 8 3.7477 -1.8045 -5.8720 21 6 3.2879 -0.6902 -3.2690 22 6 2.8271 -0.0385 -2.1403 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.1263 -0.7995 1.2056 27 1 1.6053 -1.7198 1.2951 28 1 2.9317 -1.8367 4.7312 29 1 1.0860 -2.5617 -0.7331 30 1 1.9006 -3.7203 -2.7475 31 1 4.9652 -4.2522 -3.5874 32 1 5.5680 -4.1037 -5.2553 33 1 5.8035 -2.7686 -4.1017 34 1 3.9086 -0.1652 -3.9801 35 1 3.0875 0.9956 -1.9696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107514015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:31 Heat of formation + Delta-G solvation = -63.014103 kcal Electronic energy + Delta-G solvation = -17911.372147 eV Core-core repulsion = 15001.137085 eV Total energy + Delta-G solvation = -2910.235062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.30229 -37.13180 -35.99115 -35.24653 -32.47703 -30.85285 -29.93929 -29.44707 -26.99800 -24.28234 -22.82045 -22.31550 -19.48385 -18.96521 -17.75222 -16.56512 -16.24801 -15.95004 -15.06644 -14.84832 -14.47206 -14.32198 -13.50991 -13.43741 -13.35103 -13.10351 -12.95443 -12.59422 -12.21749 -12.12682 -12.01337 -11.76377 -11.29348 -11.16501 -11.06262 -10.96537 -10.82374 -10.49623 -10.36053 -9.98108 -9.58588 -9.16346 -8.81345 -8.63285 -8.42797 -6.08012 -4.10756 0.02429 1.07855 1.54780 2.85495 3.27924 3.33051 3.34879 3.60358 3.99170 4.06766 4.39006 4.60218 4.75487 4.99317 5.05698 5.22207 5.28020 5.46281 5.56529 5.62092 5.82843 5.91500 6.06602 6.16952 6.19754 6.30386 6.49081 6.57447 6.85530 6.86659 7.01436 7.12897 7.54592 7.66366 7.89693 8.30575 8.94469 9.53478 11.03097 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039296 B = 0.003946 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.363142 B = 7094.686134 C = 7300.060346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 H 0.070 0.930 4 C 0.034 3.966 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.005 3.995 14 C -0.133 4.133 15 C -0.025 4.025 16 C -0.678 4.678 17 S 2.505 3.495 18 C -0.651 4.651 19 O -0.944 6.944 20 O -0.945 6.945 21 C -0.026 4.026 22 C -0.146 4.146 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.017 0.983 27 H 0.021 0.979 28 H 0.262 0.738 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -2.611 -14.647 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 H 0.089 0.911 4 C -0.003 4.003 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.005 3.995 14 C -0.152 4.152 15 C -0.044 4.044 16 C -0.766 4.766 17 S 2.686 3.314 18 C -0.801 4.801 19 O -0.941 6.941 20 O -0.943 6.943 21 C -0.045 4.045 22 C -0.165 4.165 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.102 -2.786 -15.313 15.871 hybrid contribution 0.195 0.582 1.877 1.974 sum 3.297 -2.204 -13.437 14.010 Atomic orbital electron populations 1.21725 0.94648 1.01462 1.00829 1.20581 0.95878 0.99264 0.92590 0.91110 1.19155 0.96299 0.95484 0.89314 1.21157 1.35248 1.08580 0.90852 0.92456 1.25001 0.95102 0.95058 0.99125 1.69945 1.38539 1.21142 1.23731 0.86663 0.78927 0.80117 0.82333 1.20191 1.21288 1.20234 1.20759 0.90606 0.93800 0.94378 1.21249 1.01543 0.94903 0.97503 1.20872 0.92358 0.99385 0.91799 1.30170 1.17077 1.06942 1.22429 1.04840 0.76829 0.74918 0.74786 1.30232 1.22724 1.14076 1.13050 1.93566 1.57183 1.59181 1.84196 1.93558 1.86560 1.55662 1.58481 1.20820 0.95545 0.92154 0.95967 1.21251 0.99965 1.00613 0.94686 0.93153 0.91161 0.94653 0.96513 0.96091 0.92874 0.84838 0.84630 0.84928 0.85419 0.85021 0.84736 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.82 37.15 0.33 -1.98 16 2 C -0.06 -1.25 2.51 -91.78 -0.23 -1.48 16 3 H 0.07 1.35 7.88 -51.92 -0.41 0.94 16 4 C 0.03 0.83 4.18 -27.88 -0.12 0.72 16 5 C -0.52 -13.87 8.41 -34.44 -0.29 -14.16 16 6 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.00 0.08 4.78 -104.63 -0.50 -0.42 16 14 C -0.13 -2.17 8.76 -39.58 -0.35 -2.52 16 15 C -0.03 -0.36 9.47 -39.58 -0.37 -0.73 16 16 C -0.68 -8.90 5.66 -39.58 -0.22 -9.13 16 17 S 2.51 26.66 5.80 -107.50 -0.62 26.04 16 18 C -0.65 -4.34 10.80 101.05 1.09 -3.25 16 19 O -0.94 -12.86 17.13 -57.54 -0.99 -13.84 16 20 O -0.95 -12.64 17.13 -57.54 -0.99 -13.63 16 21 C -0.03 -0.35 9.47 -39.58 -0.37 -0.72 16 22 C -0.15 -2.22 9.67 -39.58 -0.38 -2.60 16 23 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 24 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.53 7.56 -51.93 -0.39 0.14 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.13 2.15 7.16 -52.48 -0.38 1.78 16 30 H 0.14 1.63 7.57 -52.48 -0.40 1.23 16 31 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.13 1.49 7.57 -52.49 -0.40 1.09 16 35 H 0.13 1.73 7.95 -52.49 -0.42 1.31 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -33.73 308.30 -8.50 -42.23 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.75 Total: -1.39 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -1.52 Total: -34.76 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.97 Total: -27.47 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 26.66 SS G_CDS: -0.62 Total: 26.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.73 -8.50 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107514015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.784 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds