Wall clock time and date at job start Mon Mar 30 2020 08:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47297 * 2 1 4 4 C 1.53004 * 109.47243 * 119.99754 * 2 1 3 5 5 C 1.50701 * 109.47211 * 295.00691 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 C 1.50696 * 109.47613 * 240.00082 * 2 1 3 14 14 C 1.38235 * 119.99842 * 299.73144 * 13 2 1 15 15 C 1.38242 * 119.99819 * 179.80776 * 14 13 2 16 16 C 1.38229 * 120.00284 * 0.41566 * 15 14 13 17 17 S 1.76197 * 120.00454 * 179.79178 * 16 15 14 18 18 C 1.81399 * 104.44860 * 270.02246 * 17 16 15 19 19 O 1.42106 * 104.27390 * 26.08904 * 17 16 15 20 20 O 1.42093 * 104.28138 * 153.94991 * 17 16 15 21 21 C 1.38237 * 119.99779 * 359.81436 * 16 15 14 22 22 C 1.38235 * 120.00262 * 119.99677 * 13 2 1 23 23 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47367 * 300.00045 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99991 * 1 2 3 26 26 H 1.09000 * 109.47211 * 174.99718 * 4 2 1 27 27 H 1.09007 * 109.46376 * 55.00260 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.08005 * 120.00098 * 359.97438 * 14 13 2 30 30 H 1.08006 * 119.99680 * 180.20616 * 15 14 13 31 31 H 1.09001 * 109.47256 * 59.99887 * 18 17 16 32 32 H 1.08995 * 109.47333 * 179.97438 * 18 17 16 33 33 H 1.09003 * 109.47484 * 299.99836 * 18 17 16 34 34 H 1.08000 * 119.99892 * 179.97438 * 21 16 15 35 35 H 1.07997 * 119.99744 * 359.97438 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0804 0.9745 2.3757 7 6 1.9976 -0.3990 3.7280 8 7 2.6807 -1.5161 3.8509 9 14 1.5100 0.5697 5.2489 10 1 0.0302 0.6771 5.3142 11 1 2.0091 -0.1278 6.4612 12 1 2.1024 1.9297 5.1806 13 6 2.0324 -0.7103 -1.2304 14 6 1.7030 -2.0354 -1.4464 15 6 2.1607 -2.6859 -2.5771 16 6 2.9547 -2.0139 -3.4874 17 16 3.5425 -2.8445 -4.9258 18 6 5.1280 -3.5640 -4.4168 19 8 2.5826 -3.8665 -5.1571 20 8 3.7477 -1.8045 -5.8720 21 6 3.2879 -0.6902 -3.2690 22 6 2.8271 -0.0385 -2.1403 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 3.1263 -0.7995 1.2056 27 1 1.6053 -1.7198 1.2951 28 1 2.9317 -1.8367 4.7312 29 1 1.0860 -2.5617 -0.7331 30 1 1.9006 -3.7203 -2.7475 31 1 4.9652 -4.2522 -3.5874 32 1 5.5680 -4.1037 -5.2553 33 1 5.8035 -2.7686 -4.1017 34 1 3.9086 -0.1652 -3.9801 35 1 3.0875 0.9956 -1.9696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107514015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:07:31 Heat of formation + Delta-G solvation = -85.294157 kcal Electronic energy + Delta-G solvation = -17912.338282 eV Core-core repulsion = 15001.137085 eV Total energy + Delta-G solvation = -2911.201197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51833 -38.08216 -36.99365 -36.76728 -34.41809 -31.99938 -31.17331 -30.18470 -28.81756 -25.91333 -24.21591 -23.64033 -20.93483 -19.94586 -18.80720 -18.47189 -17.08497 -17.01117 -16.59245 -16.30416 -15.86603 -15.49197 -14.78580 -14.60106 -14.33739 -14.23171 -14.03678 -13.90735 -13.58503 -13.44514 -13.09586 -12.98849 -12.87576 -12.80067 -12.43718 -12.38100 -12.23128 -11.96300 -11.69350 -11.61987 -11.24023 -11.06211 -10.54288 -9.96633 -9.93775 -8.18915 -6.28711 -0.79001 -0.07508 0.38494 1.41123 1.42853 1.50557 1.97691 2.40717 2.52554 3.09608 3.14988 3.25414 3.79200 3.87442 4.00633 4.15188 4.17467 4.34972 4.42685 4.53807 4.59068 4.64075 4.85696 5.00186 5.00520 5.10267 5.13757 5.22123 5.24554 5.40169 5.47644 5.55282 5.80286 5.84996 5.94010 6.24369 6.86243 7.39988 8.92580 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039296 B = 0.003946 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.363142 B = 7094.686134 C = 7300.060346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.055 4.055 3 H 0.072 0.928 4 C 0.043 3.957 5 C -0.534 4.534 6 H 0.064 0.936 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.268 1.268 13 C -0.023 4.023 14 C -0.151 4.151 15 C -0.031 4.031 16 C -0.677 4.677 17 S 2.520 3.480 18 C -0.628 4.628 19 O -0.977 6.977 20 O -0.973 6.973 21 C -0.027 4.027 22 C -0.153 4.153 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.059 0.941 26 H -0.014 1.014 27 H -0.003 1.003 28 H 0.262 0.738 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.162 0.838 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 -2.302 -15.764 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 H 0.090 0.910 4 C 0.006 3.994 5 C -0.572 4.572 6 H 0.082 0.918 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.023 4.023 14 C -0.170 4.170 15 C -0.049 4.049 16 C -0.762 4.762 17 S 2.703 3.297 18 C -0.781 4.781 19 O -0.974 6.974 20 O -0.970 6.970 21 C -0.046 4.046 22 C -0.171 4.171 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.016 0.984 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.180 0.820 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.953 -2.433 -16.428 17.071 hybrid contribution 0.008 0.404 2.118 2.156 sum 3.961 -2.029 -14.309 14.986 Atomic orbital electron populations 1.21657 0.93682 1.01488 1.01320 1.20336 0.96750 0.98747 0.91544 0.91008 1.18965 0.94168 0.94753 0.91483 1.21604 1.34786 1.08854 0.91914 0.91792 1.25896 0.95104 0.96018 1.02511 1.70084 1.39964 1.22892 1.24423 0.85589 0.78947 0.78810 0.78244 1.19224 1.21150 1.19262 1.20601 0.92762 0.94383 0.94520 1.21285 1.02278 0.94946 0.98446 1.21093 0.92261 1.00323 0.91249 1.30680 1.15838 1.07114 1.22540 1.04493 0.77963 0.73876 0.73387 1.30050 1.18529 1.14827 1.14727 1.93525 1.60085 1.59442 1.84366 1.93521 1.87360 1.57006 1.59160 1.21170 0.95300 0.92394 0.95707 1.21460 0.99384 1.01423 0.94865 0.93402 0.92475 0.92171 0.99574 0.98424 0.92891 0.85927 0.82835 0.83439 0.82530 0.83061 0.82034 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 8.82 71.98 0.63 -3.84 16 2 C -0.06 -2.19 2.51 -11.54 -0.03 -2.22 16 3 H 0.07 2.77 7.88 -2.38 -0.02 2.75 16 4 C 0.04 2.19 4.18 29.85 0.12 2.32 16 5 C -0.53 -29.06 8.41 25.60 0.22 -28.84 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 9 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 C -0.02 -0.79 4.78 -19.87 -0.09 -0.88 16 14 C -0.15 -5.04 8.76 22.27 0.20 -4.84 16 15 C -0.03 -0.85 9.47 22.27 0.21 -0.64 16 16 C -0.68 -16.67 5.66 22.27 0.13 -16.55 16 17 S 2.52 47.74 5.80 -56.49 -0.33 47.41 16 18 C -0.63 -5.62 10.80 113.37 1.22 -4.39 16 19 O -0.98 -25.07 17.13 -127.65 -2.19 -27.26 16 20 O -0.97 -23.91 17.13 -127.65 -2.19 -26.10 16 21 C -0.03 -0.69 9.47 22.27 0.21 -0.48 16 22 C -0.15 -4.51 9.67 22.27 0.22 -4.30 16 23 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 24 H 0.06 2.17 6.95 -2.39 -0.02 2.15 16 25 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.00 -0.14 7.56 -2.38 -0.02 -0.16 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.12 4.21 7.16 -2.91 -0.02 4.19 16 30 H 0.15 3.59 7.57 -2.91 -0.02 3.56 16 31 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.16 3.14 7.57 -2.91 -0.02 3.12 16 35 H 0.14 3.67 7.95 -2.91 -0.02 3.65 16 Total: -1.00 -74.13 308.30 2.18 -71.95 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.07 Total: 8.13 kcal Atomic # 6 Polarization: -67.56 SS G_CDS: 3.50 Total: -64.07 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.28 Total: -55.29 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -4.37 Total: -53.36 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.33 Total: 47.41 kcal Total: -74.13 2.18 -71.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107514015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.349 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds