Wall clock time and date at job start Mon Mar 30 2020 08:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35682 * 117.00097 * 2 1 4 4 C 1.38687 * 120.12855 * 0.02663 * 3 2 1 5 5 C 1.38050 * 120.11571 * 179.97438 * 4 3 2 6 6 C 1.38742 * 120.38347 * 359.97438 * 5 4 3 7 7 F 1.35102 * 119.87402 * 179.97438 * 6 5 4 8 8 C 1.37966 * 120.25438 * 359.73941 * 6 5 4 9 9 C 1.39784 * 119.87338 * 0.51881 * 8 6 5 10 10 C 1.47402 * 120.18453 * 179.76931 * 9 8 6 11 11 O 1.21516 * 119.99608 * 179.72468 * 10 9 8 12 12 O 1.34750 * 120.00078 * 359.71086 * 10 9 8 13 13 C 1.45200 * 117.00003 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47321 * 30.00116 * 13 12 10 15 15 C 1.53006 * 109.47003 * 270.00460 * 13 12 10 16 16 C 1.50698 * 109.46811 * 150.00647 * 13 12 10 17 17 H 1.07993 * 120.00472 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99554 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99716 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99745 * 20 18 16 22 22 H 1.48503 * 109.46926 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47302 * 299.99567 * 20 18 16 24 24 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46721 * 300.00057 * 1 2 3 26 26 H 1.09004 * 109.47053 * 59.99732 * 1 2 3 27 27 H 1.07996 * 119.94276 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.80963 * 180.02562 * 5 4 3 29 29 H 1.07996 * 120.06420 * 180.28107 * 8 6 5 30 30 H 1.09001 * 109.47002 * 179.97438 * 15 13 12 31 31 H 1.08993 * 109.46955 * 300.00258 * 15 13 12 32 32 H 1.09000 * 109.47050 * 60.00087 * 15 13 12 33 33 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2923 2.3738 0.0006 5 6 1.9194 3.6036 0.0011 6 6 3.3044 3.6852 0.0016 7 9 3.9073 4.8942 0.0016 8 6 4.0684 2.5364 0.0070 9 6 3.4446 1.2854 0.0010 10 6 4.2542 0.0536 0.0016 11 8 3.7084 -1.0321 0.0014 12 8 5.5994 0.1315 0.0021 13 6 6.3323 -1.1220 0.0020 14 1 5.7476 -1.8848 -0.5121 15 6 6.5892 -1.5626 1.4446 16 6 7.6484 -0.9343 -0.7078 17 1 7.9082 0.0305 -1.1175 18 6 8.5207 -1.9946 -0.8341 19 7 8.2046 -3.1694 -0.3347 20 14 10.1517 -1.7622 -1.7146 21 1 10.9488 -0.7232 -1.0142 22 1 10.9013 -3.0442 -1.7145 23 1 9.9020 -1.3344 -3.1145 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2138 2.3186 0.0006 28 1 1.3283 4.5076 0.0019 29 1 5.1462 2.6034 0.0120 30 1 7.1389 -2.5038 1.4446 31 1 7.1738 -0.7998 1.9588 32 1 5.6373 -1.6982 1.9580 33 1 8.8185 -3.9152 -0.4233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113685743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:20 Heat of formation + Delta-G solvation = -142.623187 kcal Electronic energy + Delta-G solvation = -20104.627755 eV Core-core repulsion = 16624.727408 eV Total energy + Delta-G solvation = -3479.900347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.83884 -40.46605 -38.94658 -37.20612 -35.54667 -33.23630 -31.70918 -29.84303 -29.45724 -27.35816 -25.30123 -24.54318 -22.45965 -21.49464 -19.88568 -18.31033 -17.60291 -17.10491 -16.45766 -16.08305 -15.98541 -15.42922 -15.19929 -14.78109 -14.76993 -14.46429 -14.28074 -13.27614 -12.95281 -12.86321 -12.59400 -12.07288 -11.95418 -11.80061 -11.29001 -11.18026 -11.03670 -11.01351 -10.81209 -10.35735 -10.25206 -9.61545 -9.48968 -9.30346 -8.87802 -8.46036 -8.21984 -6.15426 -4.22284 0.65649 1.09403 2.92426 3.12892 3.28860 3.31831 3.33898 3.56634 3.80865 4.16944 4.34700 4.51067 4.63726 4.87882 5.01493 5.07400 5.17128 5.20173 5.38138 5.55024 5.73400 5.87177 5.93286 6.10051 6.56595 6.68046 6.93098 6.95149 7.16592 7.24805 7.62413 7.76103 7.96623 8.16956 8.66864 8.91265 9.42887 10.92010 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.005149 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.750938 B = 5437.147197 C = 6377.432729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.276 6.276 3 C 0.175 3.825 4 C -0.199 4.199 5 C -0.086 4.086 6 C 0.044 3.956 7 F -0.139 7.139 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.496 3.504 11 O -0.494 6.494 12 O -0.354 6.354 13 C 0.217 3.783 14 H 0.048 0.952 15 C -0.155 4.155 16 C -0.521 4.521 17 H 0.069 0.931 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.912 3.088 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.016 0.984 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.634 11.222 1.311 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.187 6.187 3 C 0.127 3.873 4 C -0.218 4.218 5 C -0.105 4.105 6 C 0.025 3.975 7 F -0.118 7.118 8 C -0.075 4.075 9 C -0.123 4.123 10 C 0.339 3.661 11 O -0.384 6.384 12 O -0.270 6.270 13 C 0.165 3.835 14 H 0.065 0.935 15 C -0.213 4.213 16 C -0.559 4.559 17 H 0.087 0.913 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.739 3.261 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.178 0.822 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.567 10.497 1.333 18.004 hybrid contribution 0.659 0.310 -0.390 0.827 sum -13.907 10.807 0.942 17.638 Atomic orbital electron populations 1.23196 0.78662 1.04546 1.01105 1.86443 1.20814 1.24939 1.86478 1.19075 0.90734 0.85238 0.92270 1.20994 1.00500 0.90857 1.09413 1.21063 0.92724 0.98687 0.98050 1.17380 0.90787 0.80598 1.08766 1.91504 1.83730 1.42012 1.94504 1.21439 1.02082 0.89309 0.94705 1.18639 0.89787 0.92739 1.11123 1.20521 0.83209 0.87932 0.74464 1.90826 1.73252 1.29221 1.45071 1.86529 1.16605 1.41792 1.82109 1.20647 0.89922 0.78172 0.94755 0.93458 1.22164 0.98901 1.03614 0.96577 1.20987 1.00731 0.97599 1.36583 0.91330 1.24881 0.98779 0.94696 0.95580 1.69892 1.36991 1.01055 1.44767 0.86328 0.82301 0.77443 0.80016 1.19937 1.21051 1.19994 0.87798 0.92532 0.92516 0.83819 0.84130 0.82159 0.88236 0.94419 0.96460 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.28 -4.29 8.57 -40.65 -0.35 -4.64 16 3 C 0.17 2.61 6.70 -38.69 -0.26 2.35 16 4 C -0.20 -2.15 9.03 -39.48 -0.36 -2.51 16 5 C -0.09 -0.91 10.01 -39.46 -0.39 -1.30 16 6 C 0.04 0.57 7.28 -39.50 -0.29 0.29 16 7 F -0.14 -1.83 17.26 2.25 0.04 -1.79 16 8 C -0.06 -0.86 9.59 -39.10 -0.37 -1.24 16 9 C -0.12 -2.12 5.88 -104.87 -0.62 -2.74 16 10 C 0.50 11.11 7.86 34.46 0.27 11.38 16 11 O -0.49 -12.29 14.42 -26.61 -0.38 -12.68 16 12 O -0.35 -8.65 9.11 -40.63 -0.37 -9.02 16 13 C 0.22 5.95 2.56 -27.88 -0.07 5.88 16 14 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 15 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 16 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 20 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.14 1.06 6.29 -52.49 -0.33 0.73 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.16 2.46 7.61 -52.49 -0.40 2.06 16 30 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -32.26 294.86 -5.62 -37.87 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.45 Total: -1.76 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.15 Total: -3.81 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.63 Total: -24.86 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.10 Total: -26.33 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.26 -5.62 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113685743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.751 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds