Wall clock time and date at job start Mon Mar 30 2020 08:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35682 * 117.00097 * 2 1 4 4 C 1.38687 * 120.12855 * 0.02663 * 3 2 1 5 5 C 1.38050 * 120.11571 * 179.97438 * 4 3 2 6 6 C 1.38742 * 120.38347 * 359.97438 * 5 4 3 7 7 F 1.35102 * 119.87402 * 179.97438 * 6 5 4 8 8 C 1.37966 * 120.25438 * 359.73941 * 6 5 4 9 9 C 1.39784 * 119.87338 * 0.51881 * 8 6 5 10 10 C 1.47402 * 120.18453 * 179.76931 * 9 8 6 11 11 O 1.21516 * 119.99608 * 179.72468 * 10 9 8 12 12 O 1.34750 * 120.00078 * 359.71086 * 10 9 8 13 13 C 1.45200 * 117.00003 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47321 * 30.00116 * 13 12 10 15 15 C 1.53006 * 109.47003 * 270.00460 * 13 12 10 16 16 C 1.50698 * 109.46811 * 150.00647 * 13 12 10 17 17 H 1.07993 * 120.00472 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99554 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00420 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99716 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47454 * 59.99745 * 20 18 16 22 22 H 1.48503 * 109.46926 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47302 * 299.99567 * 20 18 16 24 24 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46721 * 300.00057 * 1 2 3 26 26 H 1.09004 * 109.47053 * 59.99732 * 1 2 3 27 27 H 1.07996 * 119.94276 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.80963 * 180.02562 * 5 4 3 29 29 H 1.07996 * 120.06420 * 180.28107 * 8 6 5 30 30 H 1.09001 * 109.47002 * 179.97438 * 15 13 12 31 31 H 1.08993 * 109.46955 * 300.00258 * 15 13 12 32 32 H 1.09000 * 109.47050 * 60.00087 * 15 13 12 33 33 H 0.97001 * 120.00306 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2923 2.3738 0.0006 5 6 1.9194 3.6036 0.0011 6 6 3.3044 3.6852 0.0016 7 9 3.9073 4.8942 0.0016 8 6 4.0684 2.5364 0.0070 9 6 3.4446 1.2854 0.0010 10 6 4.2542 0.0536 0.0016 11 8 3.7084 -1.0321 0.0014 12 8 5.5994 0.1315 0.0021 13 6 6.3323 -1.1220 0.0020 14 1 5.7476 -1.8848 -0.5121 15 6 6.5892 -1.5626 1.4446 16 6 7.6484 -0.9343 -0.7078 17 1 7.9082 0.0305 -1.1175 18 6 8.5207 -1.9946 -0.8341 19 7 8.2046 -3.1694 -0.3347 20 14 10.1517 -1.7622 -1.7146 21 1 10.9488 -0.7232 -1.0142 22 1 10.9013 -3.0442 -1.7145 23 1 9.9020 -1.3344 -3.1145 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.2138 2.3186 0.0006 28 1 1.3283 4.5076 0.0019 29 1 5.1462 2.6034 0.0120 30 1 7.1389 -2.5038 1.4446 31 1 7.1738 -0.7998 1.9588 32 1 5.6373 -1.6982 1.9580 33 1 8.8185 -3.9152 -0.4233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113685743.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:19 Heat of formation + Delta-G solvation = -161.923569 kcal Electronic energy + Delta-G solvation = -20105.464682 eV Core-core repulsion = 16624.727408 eV Total energy + Delta-G solvation = -3480.737274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.86163 -41.74504 -40.54072 -38.27106 -37.46454 -35.33207 -32.92092 -31.50198 -30.86192 -28.17843 -27.47432 -25.91829 -23.72794 -22.98581 -21.63279 -19.60858 -18.85850 -18.65685 -18.12693 -17.52930 -17.13122 -16.93697 -16.48515 -16.38882 -16.20937 -15.69907 -15.39783 -14.82152 -14.39456 -14.11534 -13.87589 -13.78604 -13.42644 -13.14362 -12.99543 -12.87148 -12.82190 -12.40164 -12.26218 -12.16457 -11.91941 -11.59280 -11.33769 -11.00707 -10.60648 -10.37928 -9.27330 -8.29098 -6.46460 -0.48816 0.06379 1.41250 1.45827 1.51695 1.54030 1.91784 2.20689 2.40573 2.50249 3.01306 3.13370 3.53284 3.67465 3.96265 4.03141 4.27713 4.34074 4.42275 4.51411 4.65022 4.73522 4.76758 4.80392 4.84644 4.94262 4.99623 5.15253 5.46479 5.56563 5.60104 5.88729 6.04777 6.29254 6.58362 6.94304 7.25126 8.78772 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.005149 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.750938 B = 5437.147197 C = 6377.432729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.317 6.317 3 C 0.172 3.828 4 C -0.178 4.178 5 C -0.056 4.056 6 C 0.041 3.959 7 F -0.139 7.139 8 C -0.065 4.065 9 C -0.161 4.161 10 C 0.489 3.511 11 O -0.531 6.531 12 O -0.360 6.360 13 C 0.219 3.781 14 H 0.007 0.993 15 C -0.141 4.141 16 C -0.550 4.550 17 H 0.068 0.932 18 C 0.017 3.983 19 N -0.917 5.917 20 Si 0.985 3.015 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.269 1.269 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.191 0.809 28 H 0.188 0.812 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.233 13.635 1.032 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.229 6.229 3 C 0.124 3.876 4 C -0.197 4.197 5 C -0.074 4.074 6 C 0.021 3.979 7 F -0.118 7.118 8 C -0.084 4.084 9 C -0.163 4.163 10 C 0.335 3.665 11 O -0.423 6.423 12 O -0.277 6.277 13 C 0.166 3.834 14 H 0.024 0.976 15 C -0.199 4.199 16 C -0.588 4.588 17 H 0.086 0.914 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.200 1.200 23 H -0.194 1.194 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.208 0.792 28 H 0.206 0.794 29 H 0.164 0.836 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.191 12.928 1.062 20.746 hybrid contribution 0.965 -0.400 -0.293 1.085 sum -15.226 12.528 0.769 19.733 Atomic orbital electron populations 1.23585 0.75566 1.05894 1.03566 1.86393 1.24207 1.25973 1.86338 1.19306 0.89870 0.86659 0.91771 1.21446 1.02341 0.89000 1.06871 1.21582 0.91505 1.00326 0.93989 1.17445 0.91833 0.79633 1.08964 1.91508 1.84033 1.41709 1.94536 1.21287 1.01770 0.89730 0.95650 1.18424 0.90783 0.90939 1.16171 1.21460 0.82362 0.89634 0.73008 1.90782 1.73365 1.31056 1.47097 1.86518 1.18346 1.40088 1.82758 1.20365 0.89580 0.78496 0.94969 0.97562 1.21980 0.98947 1.02917 0.96022 1.21256 1.01535 0.98094 1.37869 0.91424 1.25854 1.02514 0.94036 0.95894 1.70015 1.38383 1.01837 1.45221 0.85204 0.77307 0.77930 0.78777 1.18772 1.20036 1.19357 0.87370 0.89874 0.89967 0.79212 0.79433 0.83647 0.89860 0.93502 0.95995 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -9.71 8.57 -69.06 -0.59 -10.30 16 3 C 0.17 4.93 6.70 22.85 0.15 5.08 16 4 C -0.18 -3.06 9.03 22.33 0.20 -2.86 16 5 C -0.06 -0.90 10.01 22.35 0.22 -0.67 16 6 C 0.04 0.96 7.28 22.33 0.16 1.13 16 7 F -0.14 -3.35 17.26 44.97 0.78 -2.58 16 8 C -0.07 -2.02 9.59 22.58 0.22 -1.80 16 9 C -0.16 -5.81 5.88 -20.02 -0.12 -5.93 16 10 C 0.49 23.35 7.86 70.24 0.55 23.90 16 11 O -0.53 -28.26 14.42 26.79 0.39 -27.88 16 12 O -0.36 -18.77 9.11 -56.61 -0.52 -19.29 16 13 C 0.22 12.71 2.56 29.85 0.08 12.79 16 14 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 15 C -0.14 -7.64 9.33 71.98 0.67 -6.97 16 16 C -0.55 -32.37 8.90 25.60 0.23 -32.14 16 17 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 18 C 0.02 0.95 5.30 84.66 0.45 1.40 16 19 N -0.92 -53.91 11.32 21.45 0.24 -53.66 16 20 Si 0.99 43.79 29.54 68.60 2.03 45.82 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.08 0.87 7.66 -2.38 -0.02 0.86 16 27 H 0.19 1.52 6.29 -2.91 -0.02 1.50 16 28 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 29 H 0.15 4.76 7.61 -2.91 -0.02 4.73 16 30 H 0.08 4.77 6.07 -2.39 -0.01 4.76 16 31 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.27 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -75.12 294.86 7.39 -67.73 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.14 Total: 5.00 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 3.93 Total: -4.85 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.24 Total: -53.66 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -0.72 Total: -57.47 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -75.12 7.39 -67.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113685743.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.193 kcal (2) G-P(sol) polarization free energy of solvation -75.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds