Wall clock time and date at job start Mon Mar 30 2020 08:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46842 * 2 1 4 4 C 1.50703 * 109.46849 * 119.99118 * 2 1 3 5 5 H 1.08006 * 119.99919 * 120.01041 * 4 2 1 6 6 C 1.37872 * 120.00401 * 300.00170 * 4 2 1 7 7 N 1.31520 * 120.00021 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47410 * 60.00041 * 8 6 4 10 10 H 1.48507 * 109.47036 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47084 * 299.99828 * 8 6 4 12 12 O 1.45186 * 109.47521 * 239.99569 * 2 1 3 13 13 C 1.34232 * 117.00492 * 89.99753 * 12 2 1 14 14 O 1.20824 * 119.99458 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00659 * 180.02562 * 13 12 2 16 16 C 1.52992 * 109.47592 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 C 1.33393 * 125.20065 * 89.99722 * 18 17 16 20 20 C 1.38425 * 114.92007 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92135 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20483 * 269.69576 * 18 17 16 23 23 H 1.09000 * 109.47024 * 299.99982 * 1 2 3 24 24 H 1.08999 * 109.47122 * 60.00619 * 1 2 3 25 25 H 1.09005 * 109.46474 * 180.02562 * 1 2 3 26 26 H 0.96998 * 120.00148 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47210 * 59.99728 * 15 13 12 28 28 H 1.09001 * 109.46665 * 299.99987 * 15 13 12 29 29 H 1.09002 * 109.47103 * 59.99616 * 16 15 13 30 30 H 1.08998 * 109.46862 * 300.00428 * 16 15 13 31 31 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 32 32 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 33 33 H 1.08005 * 122.54147 * 359.96383 * 19 18 17 34 34 H 1.07995 * 122.53675 * 180.02562 * 20 19 18 35 35 H 1.07999 * 125.20519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6534 -1.5883 1.1317 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3224 -1.1191 4.0081 9 1 3.8073 -1.1186 4.0080 10 1 1.8268 -0.4194 5.2206 11 1 1.8280 -2.5194 4.0084 12 8 2.0141 -0.6845 -1.1854 13 6 2.2172 0.0638 -2.2811 14 8 1.9982 1.2517 -2.2504 15 6 2.7184 -0.5774 -3.5494 16 6 2.8637 0.4887 -4.6370 17 6 3.3732 -0.1623 -5.9245 18 6 3.5157 0.8877 -6.9960 19 6 4.6160 1.6053 -7.2280 20 6 4.5121 2.5127 -8.2681 21 6 3.3273 2.5325 -8.8805 22 16 2.2592 1.3494 -8.1368 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 0.7086 1.1616 3.4843 27 1 2.0090 -1.3372 -3.8773 28 1 3.6873 -1.0410 -3.3637 29 1 3.5734 1.2482 -4.3089 30 1 1.8951 0.9527 -4.8227 31 1 2.6638 -0.9220 -6.2528 32 1 4.3420 -0.6259 -5.7384 33 1 5.5195 1.4873 -6.6480 34 1 5.3285 3.1559 -8.5615 35 1 3.0655 3.1733 -9.7095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691399.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:32 Heat of formation + Delta-G solvation = -77.695104 kcal Electronic energy + Delta-G solvation = -17313.049095 eV Core-core repulsion = 14402.177418 eV Total energy + Delta-G solvation = -2910.871678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53386 -38.14848 -35.97108 -34.61931 -33.23960 -30.70667 -29.46466 -26.93873 -25.31027 -23.95577 -22.27714 -21.01728 -19.48340 -19.35991 -17.41411 -16.69345 -16.54125 -15.86688 -15.56880 -15.17028 -14.41068 -14.36997 -13.71156 -13.18130 -13.02025 -12.78011 -12.61817 -12.17118 -11.96965 -11.84942 -11.59385 -11.36310 -11.17165 -11.02912 -10.92642 -10.82864 -10.65490 -10.37762 -10.27480 -9.59761 -9.49724 -8.90078 -8.77822 -8.62078 -8.48123 -6.17500 -4.24661 0.84895 1.48697 1.85834 2.59748 3.04857 3.26633 3.29968 3.32447 3.70786 4.33863 4.57580 4.87618 4.92550 5.13057 5.14700 5.18771 5.33390 5.41441 5.48858 5.61333 5.69281 5.93044 5.95583 6.11488 6.16744 6.30213 6.36865 6.66132 6.89886 6.93359 7.20389 7.61157 7.74564 7.96299 8.15952 8.66351 8.90583 9.40857 10.89919 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.048443 B = 0.002996 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.860158 B = 9342.969068 C = 9463.245366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.359 6.359 13 C 0.449 3.551 14 O -0.523 6.523 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.051 4.051 18 C -0.163 4.163 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.221 4.221 22 S 0.094 5.906 23 H 0.099 0.901 24 H 0.015 0.985 25 H 0.036 0.964 26 H 0.267 0.733 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -0.670 -20.529 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.275 6.275 13 C 0.292 3.708 14 O -0.413 6.413 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.280 4.280 19 C -0.175 4.175 20 C -0.162 4.162 21 C -0.357 4.357 22 S 0.357 5.643 23 H 0.117 0.883 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.347 -0.648 -20.589 20.869 hybrid contribution 1.635 0.307 1.061 1.973 sum 4.983 -0.341 -19.528 20.156 Atomic orbital electron populations 1.22159 0.97625 1.00066 1.01382 1.20606 0.91363 0.93901 0.77905 0.93620 1.21004 1.32531 1.13487 0.88978 0.91378 1.24897 0.94937 0.95104 0.99082 1.69894 1.36026 1.22561 1.24272 0.86323 0.79206 0.79530 0.81007 1.19983 1.21028 1.19938 1.86477 1.75786 1.43766 1.21475 1.23375 0.75002 0.86069 0.86324 1.90600 1.48826 1.17064 1.84847 1.21333 1.03660 0.99480 0.90897 1.21411 1.03131 0.97584 0.91957 1.20213 1.02923 0.94504 0.91351 1.24538 0.96853 1.04313 1.02314 1.20156 0.99421 0.98037 0.99902 1.20174 0.97982 1.00815 0.97264 1.25583 0.97746 1.05702 1.06658 1.84333 1.17162 1.34855 1.27970 0.88274 0.96550 0.94456 0.92347 0.88301 0.88158 0.90590 0.90837 0.90478 0.89586 0.84236 0.84444 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.33 37.16 0.35 -3.64 16 2 C 0.21 5.86 2.56 -27.88 -0.07 5.79 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.84 8.90 -34.44 -0.31 -15.14 16 5 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 O -0.36 -8.61 9.86 -39.26 -0.39 -8.99 16 13 C 0.45 9.29 7.93 36.00 0.29 9.58 16 14 O -0.52 -12.40 15.20 -18.75 -0.28 -12.68 16 15 C -0.12 -1.60 5.81 -27.89 -0.16 -1.76 16 16 C -0.10 -1.30 4.49 -26.74 -0.12 -1.42 16 17 C -0.05 -0.49 5.71 -27.88 -0.16 -0.65 16 18 C -0.16 -1.72 5.76 -36.00 -0.21 -1.93 16 19 C -0.15 -1.47 10.05 -41.21 -0.41 -1.88 16 20 C -0.13 -1.23 10.18 -41.21 -0.42 -1.65 16 21 C -0.22 -2.03 11.23 29.04 0.33 -1.70 16 22 S 0.09 0.94 23.33 -107.50 -2.51 -1.57 16 23 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -31.64 316.38 -8.68 -40.32 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.88 Total: -0.30 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.00 Total: -12.78 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.63 Total: -24.93 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.67 Total: -21.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.64 -8.68 -40.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691399.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.378 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds