Wall clock time and date at job start Mon Mar 30 2020 08:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46921 * 2 1 4 4 C 1.50697 * 109.47025 * 240.00574 * 2 1 3 5 5 H 1.08001 * 120.00029 * 239.99918 * 4 2 1 6 6 C 1.37885 * 119.99994 * 59.99955 * 4 2 1 7 7 N 1.31512 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99742 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47522 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47284 * 120.00134 * 8 6 4 11 11 H 1.48509 * 109.46876 * 239.99929 * 8 6 4 12 12 O 1.45193 * 109.47343 * 120.00527 * 2 1 3 13 13 C 1.34232 * 116.99942 * 270.00162 * 12 2 1 14 14 O 1.20820 * 119.99983 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99880 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47094 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 1.08998 * 109.47404 * 59.99332 * 1 2 3 24 24 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47068 * 299.99385 * 1 2 3 26 26 H 0.97003 * 119.99682 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47561 * 59.99834 * 15 13 12 28 28 H 1.09000 * 109.46976 * 299.99528 * 15 13 12 29 29 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 30 30 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 31 31 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 32 32 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 33 33 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 34 34 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 35 35 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9435 0.8305 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1463 -2.2867 -3.6041 10 1 1.1659 -1.5862 -4.8163 11 1 3.1465 -0.1869 -4.8166 12 8 2.0140 -0.6845 1.1854 13 6 2.2171 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7194 -0.5773 3.5490 16 6 2.8645 0.4888 4.6368 17 6 3.3738 -0.1622 5.9243 18 6 3.5172 0.8880 6.9956 19 6 2.5628 1.2429 7.8572 20 6 2.9255 2.2327 8.7543 21 6 4.1747 2.6812 8.6216 22 16 4.9711 1.8279 7.3059 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7088 1.1617 -3.4843 27 1 3.6885 -1.0402 3.3630 28 1 2.0106 -1.3375 3.8772 29 1 1.8956 0.9522 4.8230 30 1 3.5735 1.2489 4.3084 31 1 4.3426 -0.6257 5.7384 32 1 2.6644 -0.9219 6.2525 33 1 1.5813 0.7924 7.8548 34 1 2.2487 2.6125 9.5054 35 1 4.6289 3.4482 9.2313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:34 Heat of formation + Delta-G solvation = -77.751137 kcal Electronic energy + Delta-G solvation = -17313.137230 eV Core-core repulsion = 14402.263122 eV Total energy + Delta-G solvation = -2910.874108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.53455 -38.14922 -35.97168 -34.61943 -33.24147 -30.70685 -29.46719 -26.93921 -25.31344 -23.95636 -22.27759 -21.01876 -19.48960 -19.35439 -17.41663 -16.69920 -16.53407 -15.87526 -15.56279 -15.18176 -14.40586 -14.35635 -13.71939 -13.20338 -12.95661 -12.81623 -12.64249 -12.15335 -11.95912 -11.85863 -11.61668 -11.35466 -11.16315 -11.06142 -10.92841 -10.81247 -10.65521 -10.34752 -10.27852 -9.59934 -9.50236 -8.88551 -8.77824 -8.61915 -8.48999 -6.17999 -4.24793 0.84982 1.48903 1.86160 2.59605 3.04829 3.23760 3.30375 3.35384 3.70924 4.33811 4.57529 4.87659 4.92645 5.12568 5.14838 5.18611 5.33553 5.41210 5.48644 5.61329 5.69167 5.93018 5.95396 6.11270 6.16753 6.30253 6.36717 6.65826 6.89518 6.93155 7.20180 7.61382 7.74385 7.96109 8.15794 8.66446 8.90927 9.40799 10.89537 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.045782 B = 0.003015 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.444580 B = 9285.967236 C = 9416.012926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.359 6.359 13 C 0.449 3.551 14 O -0.523 6.523 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.051 4.051 18 C -0.163 4.163 19 C -0.146 4.146 20 C -0.132 4.132 21 C -0.222 4.222 22 S 0.095 5.905 23 H 0.099 0.901 24 H 0.036 0.964 25 H 0.015 0.985 26 H 0.265 0.735 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -0.681 20.531 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.161 3.839 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.275 6.275 13 C 0.292 3.708 14 O -0.413 6.413 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.280 4.280 19 C -0.175 4.175 20 C -0.163 4.163 21 C -0.357 4.357 22 S 0.358 5.642 23 H 0.117 0.883 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.361 -0.145 19.694 20.696 hybrid contribution -1.242 -0.178 -0.193 1.270 sum 5.118 -0.323 19.501 20.164 Atomic orbital electron populations 1.22154 0.97622 1.00062 1.01378 1.20618 0.91370 0.93923 0.77940 0.93611 1.21081 1.32384 1.13432 0.88943 0.91276 1.24904 0.94958 0.95108 0.99109 1.69913 1.36167 1.22593 1.24051 0.86221 0.78629 0.79495 0.81799 1.19469 1.20708 1.20753 1.86480 1.75789 1.43758 1.21470 1.23376 0.75003 0.86067 0.86324 1.90599 1.48838 1.17059 1.84840 1.21334 1.03642 0.99490 0.90905 1.21414 1.03209 0.97541 0.91923 1.20214 1.02607 0.94577 0.91595 1.24541 0.96845 1.03958 1.02691 1.20146 1.00535 1.00017 0.96848 1.20171 0.96223 0.98609 1.01258 1.25586 0.99130 1.07074 1.03921 1.84350 1.15417 1.33991 1.30421 0.88283 0.94455 0.96553 0.92466 0.88214 0.88246 0.90650 0.90778 0.90446 0.89617 0.84268 0.84457 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 2 C 0.21 5.84 2.56 -27.89 -0.07 5.77 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.79 8.90 -34.44 -0.31 -15.09 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.91 16 8 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 O -0.36 -8.60 9.86 -39.26 -0.39 -8.99 16 13 C 0.45 9.29 7.93 36.01 0.29 9.57 16 14 O -0.52 -12.39 15.20 -18.75 -0.28 -12.68 16 15 C -0.12 -1.60 5.81 -27.88 -0.16 -1.76 16 16 C -0.10 -1.30 4.49 -26.73 -0.12 -1.42 16 17 C -0.05 -0.49 5.71 -27.88 -0.16 -0.65 16 18 C -0.16 -1.72 5.76 -36.00 -0.21 -1.93 16 19 C -0.15 -1.46 10.05 -41.21 -0.41 -1.87 16 20 C -0.13 -1.22 10.18 -41.21 -0.42 -1.64 16 21 C -0.22 -2.03 11.23 29.04 0.33 -1.71 16 22 S 0.09 0.96 23.33 -107.50 -2.51 -1.55 16 23 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.07 1.05 8.10 -51.92 -0.42 0.63 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -31.67 316.38 -8.68 -40.35 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.88 Total: -0.41 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.00 Total: -12.76 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.91 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.67 Total: -21.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.67 -8.68 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.401 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds