Wall clock time and date at job start Mon Mar 30 2020 08:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46921 * 2 1 4 4 C 1.50697 * 109.47025 * 240.00574 * 2 1 3 5 5 H 1.08001 * 120.00029 * 239.99918 * 4 2 1 6 6 C 1.37885 * 119.99994 * 59.99955 * 4 2 1 7 7 N 1.31512 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99742 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47522 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47284 * 120.00134 * 8 6 4 11 11 H 1.48509 * 109.46876 * 239.99929 * 8 6 4 12 12 O 1.45193 * 109.47343 * 120.00527 * 2 1 3 13 13 C 1.34232 * 116.99942 * 270.00162 * 12 2 1 14 14 O 1.20820 * 119.99983 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99880 * 180.02562 * 13 12 2 16 16 C 1.52996 * 109.47094 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 1.08998 * 109.47404 * 59.99332 * 1 2 3 24 24 H 1.08996 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47068 * 299.99385 * 1 2 3 26 26 H 0.97003 * 119.99682 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47561 * 59.99834 * 15 13 12 28 28 H 1.09000 * 109.46976 * 299.99528 * 15 13 12 29 29 H 1.09000 * 109.47531 * 59.99538 * 16 15 13 30 30 H 1.09008 * 109.47250 * 300.00113 * 16 15 13 31 31 H 1.09000 * 109.46884 * 60.00289 * 17 16 15 32 32 H 1.09000 * 109.46955 * 299.99604 * 17 16 15 33 33 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 34 34 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 35 35 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9435 0.8305 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1463 -2.2867 -3.6041 10 1 1.1659 -1.5862 -4.8163 11 1 3.1465 -0.1869 -4.8166 12 8 2.0140 -0.6845 1.1854 13 6 2.2171 0.0639 2.2811 14 8 1.9982 1.2517 2.2504 15 6 2.7194 -0.5773 3.5490 16 6 2.8645 0.4888 4.6368 17 6 3.3738 -0.1622 5.9243 18 6 3.5172 0.8880 6.9956 19 6 2.5628 1.2429 7.8572 20 6 2.9255 2.2327 8.7543 21 6 4.1747 2.6812 8.6216 22 16 4.9711 1.8279 7.3059 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 0.7088 1.1617 -3.4843 27 1 3.6885 -1.0402 3.3630 28 1 2.0106 -1.3375 3.8772 29 1 1.8956 0.9522 4.8230 30 1 3.5735 1.2489 4.3084 31 1 4.3426 -0.6257 5.7384 32 1 2.6644 -0.9219 6.2525 33 1 1.5813 0.7924 7.8548 34 1 2.2487 2.6125 9.5054 35 1 4.6289 3.4482 9.2313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113691400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:34 Heat of formation + Delta-G solvation = -94.471582 kcal Electronic energy + Delta-G solvation = -17313.862282 eV Core-core repulsion = 14402.263122 eV Total energy + Delta-G solvation = -2911.599160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28377 -38.91198 -37.72976 -35.72427 -35.32464 -32.03419 -31.18372 -27.90345 -27.45545 -24.99994 -23.56275 -22.45832 -21.13461 -20.11750 -18.88496 -18.48127 -17.92187 -17.25279 -17.09460 -16.41682 -16.11626 -15.60850 -14.86393 -14.62424 -14.23856 -13.99981 -13.78298 -13.54625 -13.36154 -13.18109 -13.04922 -12.85765 -12.69423 -12.51299 -12.41290 -12.36278 -12.14117 -11.77304 -11.58084 -11.50196 -11.31602 -10.97916 -10.61104 -9.53010 -9.38085 -8.29705 -6.46818 0.10988 0.75767 1.13432 1.38704 1.42049 1.42794 1.56757 1.86023 2.09629 2.43302 3.00977 3.68989 3.89174 4.00692 4.21799 4.28711 4.41286 4.49400 4.57818 4.64910 4.72282 4.74930 4.77384 4.84237 4.89812 5.07091 5.18574 5.28324 5.32504 5.43015 5.48668 5.63005 5.64221 5.92952 6.11718 6.59738 7.00019 7.25998 8.78343 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.045782 B = 0.003015 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.444580 B = 9285.967236 C = 9416.012926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.276 1.276 12 O -0.366 6.366 13 C 0.440 3.560 14 O -0.560 6.560 15 C -0.102 4.102 16 C -0.095 4.095 17 C -0.042 4.042 18 C -0.181 4.181 19 C -0.151 4.151 20 C -0.143 4.143 21 C -0.221 4.221 22 S 0.069 5.931 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.271 0.729 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -2.186 21.373 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.202 1.202 12 O -0.282 6.282 13 C 0.285 3.715 14 O -0.452 6.452 15 C -0.139 4.139 16 C -0.134 4.134 17 C -0.081 4.081 18 C -0.298 4.298 19 C -0.181 4.181 20 C -0.173 4.173 21 C -0.356 4.356 22 S 0.332 5.668 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.705 -1.655 20.566 21.695 hybrid contribution -1.358 0.381 -0.359 1.456 sum 5.347 -1.274 20.207 20.942 Atomic orbital electron populations 1.21976 0.96796 1.00450 1.00739 1.20313 0.92034 0.91972 0.79492 0.97791 1.21357 1.33350 1.13885 0.89990 0.91324 1.25880 0.94720 0.95682 1.02296 1.70033 1.36698 1.23739 1.25175 0.85104 0.78355 0.78413 0.77334 1.18564 1.19609 1.20185 1.86475 1.76204 1.43886 1.21645 1.24815 0.73740 0.85862 0.87044 1.90582 1.50380 1.18903 1.85329 1.21518 1.05365 0.99974 0.87070 1.21332 1.02025 0.96932 0.93081 1.20163 1.03765 0.94556 0.89592 1.24697 0.97002 1.04643 1.03439 1.20457 1.00994 1.00001 0.96666 1.20479 0.96654 0.98482 1.01658 1.25903 0.99117 1.07171 1.03456 1.84411 1.16188 1.34760 1.31452 0.90205 0.93371 0.95838 0.92002 0.85566 0.84902 0.92083 0.92966 0.89156 0.87350 0.82973 0.82383 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.44 9.33 71.98 0.67 -6.76 16 2 C 0.22 12.05 2.56 29.85 0.08 12.13 16 3 H 0.00 0.27 7.16 -2.39 -0.02 0.25 16 4 C -0.55 -31.51 8.90 25.60 0.23 -31.28 16 5 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.99 43.06 29.54 68.60 2.03 45.09 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 O -0.37 -17.64 9.86 -51.44 -0.51 -18.15 16 13 C 0.44 18.20 7.93 71.24 0.56 18.77 16 14 O -0.56 -27.34 15.20 21.98 0.33 -27.00 16 15 C -0.10 -2.61 5.81 29.85 0.17 -2.43 16 16 C -0.10 -2.30 4.49 30.59 0.14 -2.17 16 17 C -0.04 -0.72 5.71 29.85 0.17 -0.54 16 18 C -0.18 -3.55 5.76 24.59 0.14 -3.41 16 19 C -0.15 -2.77 10.05 21.22 0.21 -2.56 16 20 C -0.14 -2.39 10.18 21.22 0.22 -2.18 16 21 C -0.22 -3.74 11.23 66.72 0.75 -2.99 16 22 S 0.07 1.35 23.33 -56.49 -1.32 0.03 16 23 H 0.08 4.49 6.07 -2.39 -0.01 4.47 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 30 H 0.05 1.48 8.10 -2.38 -0.02 1.46 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -69.99 316.38 5.64 -64.35 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.07 Total: 11.08 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.79 Total: -22.22 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.24 Total: -53.18 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -0.17 Total: -45.15 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.03 kcal Total: -69.99 5.64 -64.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.121 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds