Wall clock time and date at job start Mon Mar 30 2020 08:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46661 * 2 1 4 4 C 1.50697 * 109.46708 * 119.99611 * 2 1 3 5 5 C 1.37412 * 123.36209 * 305.33278 * 4 2 1 6 6 C 1.33854 * 115.11371 * 180.02562 * 5 4 2 7 7 S 1.70611 * 110.96352 * 0.02562 * 6 5 4 8 8 C 1.36759 * 123.35275 * 125.36379 * 4 2 1 9 9 C 1.46392 * 125.46389 * 359.95372 * 8 4 2 10 10 O 1.21632 * 119.99570 * 354.36989 * 9 8 4 11 11 O 1.34895 * 119.99869 * 174.36780 * 9 8 4 12 12 C 1.45204 * 116.99886 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46918 * 30.00179 * 12 11 9 14 14 C 1.52996 * 109.46931 * 270.00345 * 12 11 9 15 15 C 1.50700 * 109.47020 * 150.00333 * 12 11 9 16 16 H 1.07994 * 120.00050 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99855 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99961 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00071 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47107 * 59.99648 * 19 17 15 21 21 H 1.48492 * 109.47259 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46778 * 299.99865 * 19 17 15 23 23 H 1.08997 * 109.47133 * 60.00505 * 1 2 3 24 24 H 1.09006 * 109.46672 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47278 * 300.00258 * 1 2 3 26 26 H 1.09001 * 109.47278 * 239.99741 * 2 1 3 27 27 H 1.09004 * 109.46843 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47412 * 299.99382 * 3 2 1 29 29 H 1.09001 * 109.47486 * 59.99868 * 3 2 1 30 30 H 1.08000 * 122.44095 * 0.05413 * 5 4 2 31 31 H 1.08005 * 124.51402 * 180.26476 * 6 5 4 32 32 H 1.08995 * 109.47337 * 60.00487 * 14 12 11 33 33 H 1.09001 * 109.46921 * 179.97438 * 14 12 11 34 34 H 1.08996 * 109.47184 * 299.99672 * 14 12 11 35 35 H 0.97000 * 120.00133 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6583 -0.3662 2.5072 6 6 2.2049 -1.1075 3.4785 7 16 3.2385 -2.2992 2.8287 8 6 2.9062 -1.7614 1.1879 9 6 3.4740 -2.3451 -0.0286 10 8 3.0976 -1.9619 -1.1199 11 8 4.4147 -3.3078 0.0608 12 6 4.9326 -3.8412 -1.1865 13 1 4.8949 -3.0694 -1.9552 14 6 4.0826 -5.0365 -1.6219 15 6 6.3593 -4.2846 -0.9893 16 1 6.8299 -4.1760 -0.0234 17 6 7.0641 -4.8280 -2.0424 18 7 6.4912 -4.9598 -3.2188 19 14 8.8329 -5.3770 -1.7981 20 1 8.8846 -6.4287 -0.7510 21 1 9.3624 -5.9226 -3.0736 22 1 9.6574 -4.2165 -1.3754 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.9730 0.4430 2.7119 31 1 2.0139 -0.9719 4.5329 32 1 3.0507 -4.7158 -1.7646 33 1 4.4710 -5.4366 -2.5584 34 1 4.1202 -5.8083 -0.8532 35 1 6.9871 -5.3418 -3.9597 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693079.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:29 Heat of formation + Delta-G solvation = -86.901042 kcal Electronic energy + Delta-G solvation = -18302.207174 eV Core-core repulsion = 15390.936297 eV Total energy + Delta-G solvation = -2911.270877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37882 -39.64460 -37.43433 -35.37643 -34.97803 -31.99179 -30.65673 -27.99512 -27.49660 -26.23097 -23.93075 -22.68208 -22.06360 -19.95547 -18.96467 -18.51696 -17.58896 -17.07170 -16.79444 -16.60285 -15.68154 -15.12362 -14.75688 -14.71902 -14.42281 -14.24339 -13.89895 -13.50657 -13.43944 -13.20983 -13.03650 -12.93166 -12.83785 -12.43323 -12.35659 -12.20869 -12.07165 -12.06634 -11.64834 -11.59422 -11.06522 -10.88414 -10.61401 -9.87593 -9.42593 -8.30618 -6.48087 -0.57429 0.50626 1.02676 1.30282 1.40586 1.44996 1.52928 1.92022 1.98288 2.40611 2.99974 3.78969 3.87070 4.06523 4.27067 4.29462 4.40878 4.48023 4.68175 4.74301 4.75937 4.79637 4.81078 4.96085 5.01776 5.07422 5.16496 5.21515 5.37572 5.38314 5.42596 5.54289 5.66005 5.88892 6.05486 6.55786 6.87610 7.23230 8.77232 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.005192 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.584697 B = 5391.348336 C = 5940.578354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.002 3.998 5 C -0.155 4.155 6 C -0.205 4.205 7 S 0.238 5.762 8 C -0.309 4.309 9 C 0.521 3.479 10 O -0.537 6.537 11 O -0.361 6.361 12 C 0.220 3.780 13 H 0.008 0.992 14 C -0.141 4.141 15 C -0.551 4.551 16 H 0.067 0.933 17 C 0.018 3.982 18 N -0.916 5.916 19 Si 0.985 3.015 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.269 1.269 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.179 0.821 31 H 0.212 0.788 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 9.628 13.680 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C -0.188 4.188 4 C -0.015 4.015 5 C -0.185 4.185 6 C -0.342 4.342 7 S 0.508 5.492 8 C -0.427 4.427 9 C 0.368 3.632 10 O -0.431 6.431 11 O -0.277 6.277 12 C 0.167 3.833 13 H 0.026 0.974 14 C -0.199 4.199 15 C -0.588 4.588 16 H 0.085 0.915 17 C -0.182 4.182 18 N -0.554 5.554 19 Si 0.807 3.193 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.193 1.193 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.196 0.804 31 H 0.229 0.771 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.519 8.450 13.843 18.805 hybrid contribution 0.023 0.600 -1.286 1.419 sum -9.496 9.050 12.557 18.159 Atomic orbital electron populations 1.21738 0.92005 1.01610 1.03386 1.20462 0.97717 0.96829 0.95102 1.21728 1.00007 0.93730 1.03379 1.19852 0.92044 0.91792 0.97805 1.20005 1.05062 1.04306 0.89144 1.25949 1.01766 1.00134 1.06396 1.83379 1.41424 1.31021 0.93327 1.23579 1.13303 1.09002 0.96776 1.20350 0.77115 0.77232 0.88528 1.90672 1.60541 1.61573 1.30354 1.86572 1.51030 1.49694 1.40452 1.20378 0.93090 0.91283 0.78527 0.97411 1.21984 0.96294 0.98698 1.02915 1.21238 0.95882 1.43405 0.98273 0.91514 1.25843 1.03675 0.94670 0.94019 1.70009 1.39064 1.44308 1.02020 0.85212 0.77219 0.78871 0.77985 1.18723 1.20010 1.19344 0.91288 0.93981 0.90031 0.90328 0.94721 0.91170 0.90075 0.80392 0.77099 0.95967 0.89778 0.93552 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.99 71.98 0.65 -2.16 16 2 C -0.08 -2.31 3.07 -11.54 -0.04 -2.34 16 3 C -0.13 -3.05 9.09 71.98 0.65 -2.40 16 4 C 0.00 0.04 4.72 -20.41 -0.10 -0.05 16 5 C -0.16 -3.13 9.18 21.08 0.19 -2.94 16 6 C -0.20 -3.72 10.92 66.82 0.73 -2.99 16 7 S 0.24 6.46 22.93 -56.49 -1.30 5.17 16 8 C -0.31 -11.21 6.45 24.05 0.16 -11.06 16 9 C 0.52 24.64 7.89 69.94 0.55 25.19 16 10 O -0.54 -27.74 13.26 19.41 0.26 -27.49 16 11 O -0.36 -18.77 9.73 -58.09 -0.57 -19.33 16 12 C 0.22 12.69 2.57 29.85 0.08 12.76 16 13 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 14 C -0.14 -7.60 9.33 71.98 0.67 -6.93 16 15 C -0.55 -32.23 8.90 25.60 0.23 -32.00 16 16 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 17 C 0.02 1.00 5.30 84.65 0.45 1.45 16 18 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 19 Si 0.98 43.48 29.54 68.60 2.03 45.51 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 1.27 7.50 -2.39 -0.02 1.25 16 26 H 0.08 2.99 4.96 -2.39 -0.01 2.98 16 27 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.40 8.00 -2.39 -0.02 1.38 16 30 H 0.18 2.30 7.67 -2.91 -0.02 2.28 16 31 H 0.21 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 4.79 6.07 -2.39 -0.01 4.77 16 34 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -70.01 308.88 5.97 -64.04 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.08 Total: 8.85 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.22 Total: -23.46 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.24 Total: -53.28 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.31 Total: -46.82 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 6.46 SS G_CDS: -1.30 Total: 5.17 kcal Total: -70.01 5.97 -64.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693079.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.866 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds