Wall clock time and date at job start Mon Mar 30 2020 08:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35746 * 117.00021 * 2 1 4 4 C 1.38942 * 119.91697 * 0.02562 * 3 2 1 5 5 C 1.37714 * 120.12409 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.94200 * 0.27848 * 5 4 3 7 7 C 1.47475 * 120.08071 * 179.70151 * 6 5 4 8 8 O 1.21500 * 120.00137 * 359.97438 * 7 6 5 9 9 O 1.34749 * 119.99942 * 179.97438 * 7 6 5 10 10 C 1.45201 * 117.00169 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46899 * 30.00246 * 10 9 7 12 12 C 1.53001 * 109.47016 * 270.00114 * 10 9 7 13 13 C 1.50698 * 109.47021 * 150.00191 * 10 9 7 14 14 H 1.07999 * 120.00197 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99979 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99931 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00115 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.47006 * 89.99862 * 17 15 13 19 19 H 1.48500 * 109.47161 * 209.99415 * 17 15 13 20 20 H 1.48498 * 109.47059 * 329.99983 * 17 15 13 21 21 C 1.39794 * 119.83169 * 359.41661 * 6 5 4 22 22 C 1.37870 * 119.87607 * 0.58350 * 21 6 5 23 23 F 1.35097 * 119.97336 * 179.69651 * 22 21 6 24 24 H 1.08996 * 109.46894 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47182 * 59.99680 * 1 2 3 26 26 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.93853 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.02461 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.46955 * 299.99666 * 12 10 9 30 30 H 1.08996 * 109.46867 * 60.00100 * 12 10 9 31 31 H 1.09004 * 109.46491 * 179.97438 * 12 10 9 32 32 H 0.96998 * 119.99917 * 180.02562 * 16 15 13 33 33 H 1.07996 * 120.05929 * 180.28223 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2869 2.3737 0.0005 5 6 1.9077 3.6030 0.0011 6 6 3.3033 3.6798 -0.0048 7 6 3.9713 4.9946 -0.0109 8 8 3.3083 6.0128 -0.0113 9 8 5.3168 5.0667 -0.0161 10 6 5.9058 6.3938 -0.0225 11 1 5.2416 7.0886 0.4916 12 6 6.1074 6.8553 -1.4672 13 6 7.2369 6.3561 0.6832 14 1 7.6033 5.4276 1.0956 15 6 7.9865 7.5071 0.8032 16 7 7.5401 8.6378 0.3014 17 14 9.6367 7.4601 1.6772 18 1 10.7090 7.1607 0.6944 19 1 9.8992 8.7776 2.3101 20 1 9.6138 6.4048 2.7217 21 6 4.0643 2.5071 0.0011 22 6 3.4354 1.2802 0.0006 23 9 4.1689 0.1458 0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2085 2.3144 0.0014 28 1 1.3166 4.5069 0.0011 29 1 6.7716 6.1606 -1.9812 30 1 5.1447 6.8826 -1.9775 31 1 6.5492 7.8518 -1.4719 32 1 8.0676 9.4474 0.3855 33 1 5.1429 2.5622 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:05 Heat of formation + Delta-G solvation = -145.866674 kcal Electronic energy + Delta-G solvation = -19766.841577 eV Core-core repulsion = 16286.800582 eV Total energy + Delta-G solvation = -3480.040995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.81512 -40.37568 -39.41513 -37.38090 -35.65731 -33.28826 -31.06112 -30.67846 -29.42344 -27.74546 -25.34127 -24.11579 -22.84675 -21.50282 -19.90459 -18.62044 -17.68140 -17.08743 -16.42014 -16.38785 -16.19685 -15.40643 -15.23886 -14.95003 -14.92026 -14.48109 -14.41192 -13.35460 -13.03173 -12.61500 -12.60894 -12.18289 -12.13694 -11.86315 -11.40564 -11.39806 -11.18029 -11.06831 -10.83866 -10.40285 -10.29093 -9.82001 -9.57567 -9.13926 -8.93128 -8.51261 -8.40528 -6.19624 -4.26608 0.67380 1.00317 2.80963 2.82714 3.24943 3.29964 3.33427 3.53952 3.75968 4.03591 4.32505 4.46842 4.63403 4.80938 4.88495 5.06143 5.12068 5.13708 5.34140 5.38177 5.75382 5.80866 5.95275 6.25682 6.39462 6.62071 6.87835 6.88761 6.96846 7.11213 7.57222 7.70188 7.89688 8.11312 8.56786 8.84739 9.38861 10.87891 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.004154 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.190998 B = 6739.198129 C = 7311.231091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.119 3.881 4 C -0.197 4.197 5 C -0.028 4.028 6 C -0.122 4.122 7 C 0.500 3.500 8 O -0.515 6.515 9 O -0.350 6.350 10 C 0.216 3.784 11 H 0.048 0.952 12 C -0.156 4.156 13 C -0.522 4.522 14 H 0.070 0.930 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.912 3.088 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.058 4.058 22 C 0.056 3.944 23 F -0.130 7.130 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.072 -14.153 -1.222 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.072 3.928 4 C -0.216 4.216 5 C -0.047 4.047 6 C -0.123 4.123 7 C 0.344 3.656 8 O -0.407 6.407 9 O -0.266 6.266 10 C 0.164 3.836 11 H 0.066 0.934 12 C -0.213 4.213 13 C -0.560 4.560 14 H 0.088 0.912 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.739 3.261 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.077 4.077 22 C 0.036 3.964 23 F -0.108 7.108 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.162 0.838 28 H 0.165 0.835 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.049 -13.865 -1.240 19.080 hybrid contribution 0.684 0.134 0.372 0.790 sum -12.365 -13.731 -0.867 18.498 Atomic orbital electron populations 1.23169 0.77690 1.04386 1.01814 1.86102 1.21967 1.25866 1.88050 1.19277 0.90852 0.85624 0.97063 1.21036 1.00458 0.90870 1.09206 1.21151 0.92940 0.98089 0.92481 1.19171 0.93271 0.91467 1.08423 1.20726 0.83078 0.88256 0.73519 1.90779 1.66445 1.36811 1.46628 1.86544 1.18641 1.39857 1.81584 1.20697 0.92986 0.75098 0.94848 0.93379 1.22174 0.98355 1.04301 0.96496 1.21024 1.02144 0.96131 1.36669 0.91214 1.24885 0.98678 0.94836 0.95550 1.69896 1.38378 0.99643 1.44778 0.86261 0.82616 0.77557 0.79636 1.20329 1.20972 1.19581 1.21448 1.02368 0.89018 0.94833 1.16772 0.85806 0.83005 1.10798 1.91514 1.76529 1.48345 1.94445 0.92144 0.92162 0.87867 0.83767 0.83466 0.94332 0.96447 0.88157 0.92366 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.42 10.35 -18.95 -0.20 -3.61 16 3 C 0.12 1.47 6.70 -38.97 -0.26 1.20 16 4 C -0.20 -2.13 9.01 -39.51 -0.36 -2.48 16 5 C -0.03 -0.38 9.58 -39.20 -0.38 -0.75 16 6 C -0.12 -2.00 5.87 -104.98 -0.62 -2.61 16 7 C 0.50 10.56 7.86 34.49 0.27 10.83 16 8 O -0.52 -12.02 15.60 -19.27 -0.30 -12.32 16 9 O -0.35 -8.29 9.11 -40.63 -0.37 -8.66 16 10 C 0.22 5.78 2.56 -27.88 -0.07 5.71 16 11 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 12 C -0.16 -3.93 9.33 37.16 0.35 -3.59 16 13 C -0.52 -14.58 8.90 -34.44 -0.31 -14.89 16 14 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 16 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 17 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 21 C -0.06 -0.87 9.58 -39.13 -0.38 -1.25 16 22 C 0.06 0.79 7.30 -39.36 -0.29 0.50 16 23 F -0.13 -1.92 17.10 2.25 0.04 -1.88 16 24 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 25 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.14 1.06 6.27 -52.49 -0.33 0.73 16 28 H 0.15 1.84 7.64 -52.49 -0.40 1.44 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 2.70 6.07 -51.93 -0.32 2.39 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.16 2.45 7.60 -52.49 -0.40 2.05 16 LS Contribution 296.75 15.07 4.47 4.47 Total: -1.00 -31.27 296.75 -5.31 -36.58 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.42 Total: -1.50 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.14 Total: -4.56 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.53 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.87 Total: -24.59 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.27 -5.31 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.289 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds