Wall clock time and date at job start Mon Mar 30 2020 08:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35746 * 117.00021 * 2 1 4 4 C 1.38942 * 119.91697 * 0.02562 * 3 2 1 5 5 C 1.37714 * 120.12409 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.94200 * 0.27848 * 5 4 3 7 7 C 1.47475 * 120.08071 * 179.70151 * 6 5 4 8 8 O 1.21500 * 120.00137 * 359.97438 * 7 6 5 9 9 O 1.34749 * 119.99942 * 179.97438 * 7 6 5 10 10 C 1.45201 * 117.00169 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46899 * 30.00246 * 10 9 7 12 12 C 1.53001 * 109.47016 * 270.00114 * 10 9 7 13 13 C 1.50698 * 109.47021 * 150.00191 * 10 9 7 14 14 H 1.07999 * 120.00197 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99979 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99931 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00115 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.47006 * 89.99862 * 17 15 13 19 19 H 1.48500 * 109.47161 * 209.99415 * 17 15 13 20 20 H 1.48498 * 109.47059 * 329.99983 * 17 15 13 21 21 C 1.39794 * 119.83169 * 359.41661 * 6 5 4 22 22 C 1.37870 * 119.87607 * 0.58350 * 21 6 5 23 23 F 1.35097 * 119.97336 * 179.69651 * 22 21 6 24 24 H 1.08996 * 109.46894 * 299.99811 * 1 2 3 25 25 H 1.08998 * 109.47182 * 59.99680 * 1 2 3 26 26 H 1.08999 * 109.47086 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.93853 * 0.02562 * 4 3 2 28 28 H 1.08002 * 120.02461 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.46955 * 299.99666 * 12 10 9 30 30 H 1.08996 * 109.46867 * 60.00100 * 12 10 9 31 31 H 1.09004 * 109.46491 * 179.97438 * 12 10 9 32 32 H 0.96998 * 119.99917 * 180.02562 * 16 15 13 33 33 H 1.07996 * 120.05929 * 180.28223 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2869 2.3737 0.0005 5 6 1.9077 3.6030 0.0011 6 6 3.3033 3.6798 -0.0048 7 6 3.9713 4.9946 -0.0109 8 8 3.3083 6.0128 -0.0113 9 8 5.3168 5.0667 -0.0161 10 6 5.9058 6.3938 -0.0225 11 1 5.2416 7.0886 0.4916 12 6 6.1074 6.8553 -1.4672 13 6 7.2369 6.3561 0.6832 14 1 7.6033 5.4276 1.0956 15 6 7.9865 7.5071 0.8032 16 7 7.5401 8.6378 0.3014 17 14 9.6367 7.4601 1.6772 18 1 10.7090 7.1607 0.6944 19 1 9.8992 8.7776 2.3101 20 1 9.6138 6.4048 2.7217 21 6 4.0643 2.5071 0.0011 22 6 3.4354 1.2802 0.0006 23 9 4.1689 0.1458 0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2085 2.3144 0.0014 28 1 1.3166 4.5069 0.0011 29 1 6.7716 6.1606 -1.9812 30 1 5.1447 6.8826 -1.9775 31 1 6.5492 7.8518 -1.4719 32 1 8.0676 9.4474 0.3855 33 1 5.1429 2.5622 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694008.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:05 Heat of formation + Delta-G solvation = -164.361292 kcal Electronic energy + Delta-G solvation = -19767.643564 eV Core-core repulsion = 16286.800582 eV Total energy + Delta-G solvation = -3480.842982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93254 -41.61306 -40.80249 -38.53094 -37.45553 -35.34452 -32.31737 -31.84572 -31.20915 -28.43313 -27.46619 -25.47985 -23.88582 -23.16521 -21.58037 -19.71357 -19.03501 -18.69752 -17.99490 -17.56636 -17.30353 -17.06927 -16.74877 -16.32382 -16.11157 -15.84046 -15.33159 -14.98517 -14.36795 -14.09800 -14.06457 -13.57027 -13.42823 -13.16287 -12.99192 -12.97459 -12.80264 -12.41197 -12.26860 -12.17281 -12.14519 -11.61394 -11.52649 -11.01112 -10.60439 -10.18819 -9.46385 -8.29370 -6.46153 -0.50441 -0.04454 1.41690 1.43432 1.44726 1.55389 1.89105 2.03678 2.40556 2.47807 2.99909 3.01579 3.48972 3.63623 3.95013 3.96854 4.32878 4.37533 4.43024 4.48673 4.59498 4.75069 4.77780 4.78543 4.81386 4.92103 5.07485 5.20255 5.35292 5.47385 5.61172 5.88265 6.03926 6.11629 6.57832 6.88628 7.25192 8.78536 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.004154 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.190998 B = 6739.198129 C = 7311.231091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.320 6.320 3 C 0.137 3.863 4 C -0.177 4.177 5 C -0.018 4.018 6 C -0.149 4.149 7 C 0.497 3.503 8 O -0.546 6.546 9 O -0.358 6.358 10 C 0.218 3.782 11 H 0.012 0.988 12 C -0.143 4.143 13 C -0.550 4.550 14 H 0.067 0.933 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.983 3.017 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.266 1.266 21 C -0.058 4.058 22 C 0.040 3.960 23 F -0.137 7.137 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.190 0.810 28 H 0.156 0.844 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.083 0.917 32 H 0.272 0.728 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.386 -15.844 -0.982 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.233 6.233 3 C 0.089 3.911 4 C -0.195 4.195 5 C -0.036 4.036 6 C -0.150 4.150 7 C 0.343 3.657 8 O -0.439 6.439 9 O -0.274 6.274 10 C 0.164 3.836 11 H 0.029 0.971 12 C -0.201 4.201 13 C -0.587 4.587 14 H 0.086 0.914 15 C -0.182 4.182 16 N -0.554 5.554 17 Si 0.806 3.194 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.078 4.078 22 C 0.020 3.980 23 F -0.115 7.115 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.142 0.858 27 H 0.207 0.793 28 H 0.174 0.826 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.390 -15.584 -1.009 21.236 hybrid contribution 0.893 0.520 0.289 1.073 sum -13.497 -15.064 -0.719 20.239 Atomic orbital electron populations 1.23621 0.74782 1.06537 1.03495 1.86119 1.24905 1.25079 1.87207 1.19359 0.90214 0.86802 0.94729 1.21379 1.02369 0.88872 1.06872 1.21317 0.91411 0.99669 0.91253 1.18915 0.94484 0.89006 1.12622 1.21540 0.81941 0.89987 0.72184 1.90746 1.66493 1.38344 1.48285 1.86530 1.20622 1.37962 1.82291 1.20411 0.92198 0.75890 0.95052 0.97058 1.21999 0.98758 1.03350 0.95972 1.21296 1.03004 0.96582 1.37844 0.91433 1.25818 1.02387 0.94145 0.95888 1.70010 1.39845 1.00284 1.45260 0.85177 0.77769 0.77840 0.78598 1.19197 1.20187 1.19034 1.21275 1.01953 0.89362 0.95163 1.16821 0.86868 0.82288 1.11993 1.91492 1.76936 1.48478 1.94628 0.90409 0.90370 0.85786 0.79283 0.82633 0.93552 0.95615 0.89877 0.91919 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -6.02 10.35 -90.71 -0.94 -6.96 16 3 C 0.14 2.99 6.70 22.67 0.15 3.15 16 4 C -0.18 -3.17 9.01 22.31 0.20 -2.97 16 5 C -0.02 -0.45 9.58 22.52 0.22 -0.24 16 6 C -0.15 -4.90 5.87 -20.09 -0.12 -5.02 16 7 C 0.50 21.75 7.86 70.26 0.55 22.30 16 8 O -0.55 -26.42 15.60 19.83 0.31 -26.11 16 9 O -0.36 -17.68 9.11 -56.60 -0.52 -18.20 16 10 C 0.22 12.14 2.56 29.85 0.08 12.22 16 11 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 12 C -0.14 -7.47 9.33 71.98 0.67 -6.80 16 13 C -0.55 -31.56 8.90 25.60 0.23 -31.34 16 14 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 15 C 0.02 0.97 5.30 84.66 0.45 1.42 16 16 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 17 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 C -0.06 -1.79 9.58 22.56 0.22 -1.57 16 22 C 0.04 1.09 7.30 22.41 0.16 1.26 16 23 F -0.14 -3.96 17.10 44.97 0.77 -3.20 16 24 H 0.08 0.39 7.65 -2.39 -0.02 0.38 16 25 H 0.08 0.39 7.65 -2.39 -0.02 0.37 16 26 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.19 1.68 6.27 -2.91 -0.02 1.67 16 28 H 0.16 3.61 7.64 -2.91 -0.02 3.58 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 4.62 6.07 -2.38 -0.01 4.61 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.15 4.82 7.60 -2.91 -0.02 4.80 16 Total: -1.00 -69.75 296.75 6.95 -62.80 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.14 Total: 5.42 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 3.92 Total: -6.40 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -1.14 Total: -51.27 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.77 Total: -3.20 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.75 6.95 -62.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694008.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.561 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds