Wall clock time and date at job start Mon Mar 30 2020 07:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.46965 * 2 1 4 4 S 1.70617 * 124.52068 * 270.02552 * 3 2 1 5 5 C 1.75832 * 91.56437 * 179.97438 * 4 3 2 6 6 C 1.46390 * 125.46234 * 180.02562 * 5 4 3 7 7 O 1.21635 * 120.00178 * 179.97438 * 6 5 4 8 8 O 1.34902 * 120.00347 * 359.97438 * 6 5 4 9 9 C 1.45193 * 117.00144 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47609 * 329.99456 * 9 8 6 11 11 C 1.52996 * 109.47325 * 90.00130 * 9 8 6 12 12 C 1.50702 * 109.46853 * 209.99801 * 9 8 6 13 13 H 1.08000 * 120.00357 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99866 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00166 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00026 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47156 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46966 * 120.00520 * 16 14 12 19 19 H 1.48497 * 109.47312 * 240.00673 * 16 14 12 20 20 C 1.36753 * 109.07517 * 0.02562 * 5 4 3 21 21 C 1.33860 * 124.51797 * 90.28444 * 3 2 1 22 22 C 1.50697 * 122.44714 * 0.03085 * 21 3 2 23 23 H 1.09009 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46829 * 299.99600 * 1 2 3 25 25 H 1.08993 * 109.47400 * 60.00019 * 1 2 3 26 26 H 1.09003 * 109.47270 * 240.00245 * 2 1 3 27 27 H 1.08994 * 109.47791 * 120.00651 * 2 1 3 28 28 H 1.09001 * 109.47399 * 179.97438 * 11 9 8 29 29 H 1.08997 * 109.46872 * 299.99841 * 11 9 8 30 30 H 1.08998 * 109.47050 * 59.99840 * 11 9 8 31 31 H 0.97004 * 120.00155 * 179.97438 * 15 14 12 32 32 H 1.08002 * 123.35351 * 179.97438 * 20 5 4 33 33 H 1.09004 * 109.46759 * 270.22981 * 22 21 3 34 34 H 1.08997 * 109.47011 * 30.22564 * 22 21 3 35 35 H 1.08991 * 109.47819 * 150.22952 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 16 2.3539 2.3326 -1.4058 5 6 2.8453 3.7237 -0.4492 6 6 3.2980 5.0076 -0.9877 7 8 3.6151 5.9063 -0.2319 8 8 3.3635 5.1940 -2.3222 9 6 3.8206 6.4921 -2.7848 10 1 3.5445 7.2552 -2.0570 11 6 5.3417 6.4690 -2.9474 12 6 3.1784 6.8074 -4.1111 13 1 2.4947 6.1028 -4.5612 14 6 3.4628 7.9959 -4.7496 15 7 4.2949 8.8541 -4.2014 16 14 2.6673 8.3864 -6.3941 17 1 1.7782 7.2655 -6.7925 18 1 1.8686 9.6325 -6.2740 19 1 3.7221 8.5716 -7.4227 20 6 2.7369 3.4141 0.8784 21 6 2.2902 2.1341 1.1029 22 6 2.1008 1.5757 2.4897 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8898 28 1 5.6848 7.4434 -3.2952 29 1 5.8062 6.2409 -1.9881 30 1 5.6177 5.7060 -3.6753 31 1 4.4953 9.6901 -4.6508 32 1 2.9817 4.1054 1.6713 33 1 1.0848 1.7796 2.8278 34 1 2.2692 0.4989 2.4739 35 1 2.8112 2.0445 3.1705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:12 Heat of formation + Delta-G solvation = -93.798780 kcal Electronic energy + Delta-G solvation = -17800.761240 eV Core-core repulsion = 14889.191254 eV Total energy + Delta-G solvation = -2911.569986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28316 -39.65135 -37.58867 -35.37593 -34.73789 -31.99010 -31.16668 -28.42428 -27.51103 -26.36476 -23.68482 -23.02737 -21.64865 -19.73888 -19.25176 -18.67285 -17.64037 -17.14826 -16.87354 -16.52644 -15.49795 -15.26333 -15.05175 -14.65719 -14.33108 -14.13033 -13.95596 -13.41827 -13.29854 -13.16658 -13.08442 -12.97366 -12.84845 -12.67697 -12.43843 -12.20344 -12.15814 -12.02382 -11.69290 -11.59902 -11.56681 -11.04434 -10.64137 -9.75008 -9.40022 -8.31804 -6.49244 -0.65382 0.42319 0.95494 1.18938 1.40487 1.41874 1.55530 1.88949 1.90660 2.39317 2.98976 3.68895 3.88578 4.07703 4.15633 4.42076 4.42754 4.45521 4.53414 4.72115 4.74465 4.78662 4.85037 4.91576 5.00268 5.05890 5.09166 5.16851 5.34850 5.40843 5.44013 5.54694 5.55939 5.82705 5.98725 6.54110 6.81639 7.21985 8.76672 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.004456 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.444914 B = 6282.765548 C = 6882.699055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.182 4.182 4 S 0.246 5.754 5 C -0.297 4.297 6 C 0.522 3.478 7 O -0.548 6.548 8 O -0.358 6.358 9 C 0.217 3.783 10 H 0.008 0.992 11 C -0.142 4.142 12 C -0.549 4.549 13 H 0.068 0.932 14 C 0.017 3.983 15 N -0.917 5.917 16 Si 0.986 3.014 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.269 1.269 20 C -0.037 4.037 21 C -0.135 4.135 22 C -0.088 4.088 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.021 0.979 30 H 0.047 0.953 31 H 0.272 0.728 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 -19.742 9.138 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.302 4.302 4 S 0.518 5.482 5 C -0.415 4.415 6 C 0.368 3.632 7 O -0.442 6.442 8 O -0.275 6.275 9 C 0.164 3.836 10 H 0.026 0.974 11 C -0.200 4.200 12 C -0.586 4.586 13 H 0.086 0.914 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.809 3.191 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.194 1.194 20 C -0.072 4.072 21 C -0.146 4.146 22 C -0.146 4.146 23 H 0.102 0.898 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.256 -19.569 7.668 21.929 hybrid contribution 0.223 1.528 0.863 1.769 sum -6.033 -18.041 8.530 20.848 Atomic orbital electron populations 1.21795 0.93261 1.03289 1.02197 1.20359 0.96878 0.87067 1.05111 1.24806 1.05180 1.03395 0.96850 1.83293 1.58046 1.00040 1.06821 1.23557 1.20735 0.98089 0.99115 1.20344 0.74031 0.87034 0.81784 1.90774 1.48545 1.44716 1.60207 1.86569 1.77590 1.41052 1.22262 1.20447 0.92784 0.76232 0.94129 0.97391 1.21993 0.96232 1.03372 0.98372 1.21293 1.28411 1.04787 1.04134 0.91429 1.25860 0.95326 0.94756 1.02311 1.70024 1.34968 1.09921 1.40550 0.85091 0.78365 0.78335 0.77345 1.18699 1.19991 1.19418 1.20875 0.95480 0.97044 0.93766 1.18837 1.04658 0.92560 0.98575 1.20580 1.03024 1.01816 0.89209 0.89779 0.92176 0.93443 0.89595 0.87339 0.89677 0.95959 0.93394 0.91856 0.83145 0.90173 0.89273 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.06 -0.72 6.04 29.85 0.18 -0.54 16 3 C -0.18 -3.87 5.53 24.69 0.14 -3.74 16 4 S 0.25 7.07 22.87 -56.49 -1.29 5.78 16 5 C -0.30 -11.00 6.45 24.05 0.16 -10.85 16 6 C 0.52 25.11 7.90 69.94 0.55 25.66 16 7 O -0.55 -29.31 16.10 19.40 0.31 -28.99 16 8 O -0.36 -18.78 9.72 -58.16 -0.57 -19.35 16 9 C 0.22 12.60 2.56 29.85 0.08 12.68 16 10 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 11 C -0.14 -7.68 9.33 71.98 0.67 -7.01 16 12 C -0.55 -32.21 8.90 25.60 0.23 -31.98 16 13 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 14 C 0.02 0.97 5.30 84.66 0.45 1.42 16 15 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 16 Si 0.99 43.53 29.54 68.60 2.03 45.55 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 C -0.04 -1.12 9.79 21.73 0.21 -0.91 16 21 C -0.13 -3.02 5.78 -21.06 -0.12 -3.15 16 22 C -0.09 -1.24 9.84 71.24 0.70 -0.54 16 23 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.11 0.97 6.56 -2.39 -0.02 0.95 16 28 H 0.08 4.86 6.07 -2.39 -0.01 4.84 16 29 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.87 6.54 -2.39 -0.02 0.85 16 35 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 Total: -1.00 -70.51 313.83 5.76 -64.75 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.09 Total: 5.63 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.95 Total: -19.99 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.24 Total: -53.39 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -0.25 Total: -48.34 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -1.29 Total: 5.78 kcal Total: -70.51 5.76 -64.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.048 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds