Wall clock time and date at job start Mon Mar 30 2020 07:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47158 * 2 1 4 4 S 1.70613 * 124.51966 * 269.95774 * 3 2 1 5 5 C 1.75834 * 91.56609 * 180.02562 * 4 3 2 6 6 C 1.46389 * 125.46103 * 179.97438 * 5 4 3 7 7 O 1.21632 * 119.99782 * 180.02562 * 6 5 4 8 8 O 1.34895 * 120.00271 * 0.02562 * 6 5 4 9 9 C 1.45204 * 117.00380 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46373 * 29.99941 * 9 8 6 11 11 C 1.52995 * 109.47010 * 270.00035 * 9 8 6 12 12 C 1.50698 * 109.47342 * 149.99979 * 9 8 6 13 13 H 1.07999 * 120.00174 * 34.99602 * 12 9 8 14 14 C 1.37876 * 119.99924 * 215.00299 * 12 9 8 15 15 N 1.31513 * 120.00003 * 184.91410 * 14 12 9 16 16 Si 1.86801 * 120.00101 * 4.90887 * 14 12 9 17 17 H 1.48502 * 109.46732 * 84.83604 * 16 14 12 18 18 H 1.48502 * 109.47363 * 204.83620 * 16 14 12 19 19 H 1.48499 * 109.47068 * 324.83991 * 16 14 12 20 20 C 1.36749 * 109.07034 * 0.02562 * 5 4 3 21 21 C 1.33857 * 124.51787 * 89.99929 * 3 2 1 22 22 C 1.50701 * 122.44803 * 359.94093 * 21 3 2 23 23 H 1.09007 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47560 * 300.00067 * 1 2 3 25 25 H 1.08997 * 109.47424 * 60.00096 * 1 2 3 26 26 H 1.09000 * 109.47560 * 239.99933 * 2 1 3 27 27 H 1.09005 * 109.47315 * 119.99548 * 2 1 3 28 28 H 1.08995 * 109.47624 * 295.02726 * 11 9 8 29 29 H 1.09001 * 109.47659 * 55.03408 * 11 9 8 30 30 H 1.09006 * 109.47160 * 175.02511 * 11 9 8 31 31 H 0.97001 * 119.99926 * 179.97438 * 15 14 12 32 32 H 1.08000 * 123.35090 * 180.26758 * 20 5 4 33 33 H 1.09000 * 109.47354 * 269.99934 * 22 21 3 34 34 H 1.08996 * 109.46921 * 30.00395 * 22 21 3 35 35 H 1.08998 * 109.46984 * 149.99894 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3555 2.3320 -1.4057 5 6 2.8474 3.7230 -0.4493 6 6 3.3024 5.0060 -0.9878 7 8 3.6205 5.9043 -0.2320 8 8 3.3689 5.1919 -2.3222 9 6 3.8284 6.4893 -2.7851 10 1 4.5220 6.9099 -2.0569 11 6 2.6299 7.4262 -2.9483 12 6 4.5267 6.3312 -4.1111 13 1 4.1791 5.5944 -4.8201 14 6 5.6096 7.1271 -4.4191 15 7 6.1588 7.0573 -5.6120 16 14 6.2965 8.3048 -3.1421 17 1 7.2532 7.5819 -2.2660 18 1 6.9975 9.4217 -3.8250 19 1 5.1850 8.8468 -2.3200 20 6 2.7379 3.4138 0.8783 21 6 2.2851 2.1360 1.1029 22 6 2.0873 1.5805 2.4898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9804 7.0510 -3.7391 29 1 2.0737 7.4713 -2.0120 30 1 2.9819 8.4241 -3.2101 31 1 6.9205 7.6175 -5.8288 32 1 2.9784 4.1065 1.6711 33 1 1.0710 1.7899 2.8236 34 1 2.2505 0.5029 2.4762 35 1 2.7974 2.0469 3.1726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:17 Heat of formation + Delta-G solvation = -75.971418 kcal Electronic energy + Delta-G solvation = -17876.042588 eV Core-core repulsion = 14965.245655 eV Total energy + Delta-G solvation = -2910.796933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.63137 -38.53084 -35.80082 -33.87543 -33.07369 -30.86932 -30.20162 -27.55671 -25.48599 -25.07005 -22.64577 -21.37442 -19.91456 -18.54967 -17.99134 -16.95848 -16.14930 -15.84927 -15.27459 -14.61970 -14.42377 -14.33729 -13.78711 -13.35176 -12.91830 -12.73795 -12.69849 -12.44645 -12.34121 -12.12108 -11.97384 -11.56122 -11.46992 -11.20760 -11.12196 -10.98773 -10.72582 -10.63059 -10.09982 -9.81670 -9.52197 -9.15085 -8.73455 -8.60717 -8.32480 -6.28701 -4.32830 0.56530 1.58412 2.05899 2.36172 3.20109 3.28814 3.34762 3.40007 3.49275 4.25740 4.52777 4.81370 4.98514 5.05017 5.07612 5.22975 5.30068 5.46834 5.50930 5.55951 5.62133 5.73239 5.78659 5.96611 6.00934 6.15958 6.30928 6.41990 6.44835 6.51204 6.68050 7.13406 7.30942 7.48645 8.20247 8.57839 8.81276 9.30255 10.82497 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.004702 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.685321 B = 5953.593380 C = 6320.168182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.214 4.214 4 S 0.256 5.744 5 C -0.244 4.244 6 C 0.525 3.475 7 O -0.516 6.516 8 O -0.344 6.344 9 C 0.183 3.817 10 H 0.048 0.952 11 C -0.153 4.153 12 C -0.518 4.518 13 H 0.086 0.914 14 C 0.083 3.917 15 N -0.881 5.881 16 Si 0.869 3.131 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.260 1.260 20 C -0.055 4.055 21 C -0.126 4.126 22 C -0.090 4.090 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 -13.142 12.849 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.334 4.334 4 S 0.527 5.473 5 C -0.363 4.363 6 C 0.369 3.631 7 O -0.408 6.408 8 O -0.260 6.260 9 C 0.130 3.870 10 H 0.066 0.934 11 C -0.211 4.211 12 C -0.555 4.555 13 H 0.104 0.896 14 C -0.121 4.121 15 N -0.517 5.517 16 Si 0.695 3.305 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.185 1.185 20 C -0.089 4.089 21 C -0.138 4.138 22 C -0.149 4.149 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.758 -13.059 11.264 19.815 hybrid contribution 0.694 1.160 2.156 2.545 sum -9.064 -11.899 13.420 20.096 Atomic orbital electron populations 1.21782 0.94213 1.01915 1.02644 1.20115 0.96240 0.89548 1.03316 1.24287 1.08200 1.02312 0.98555 1.83419 1.57571 1.00945 1.05356 1.23823 1.16265 0.98711 0.97523 1.19743 0.74771 0.85573 0.83046 1.90802 1.46694 1.43295 1.60055 1.86776 1.76848 1.41992 1.20385 1.21055 0.93248 0.77207 0.95491 0.93411 1.22241 0.98997 1.00132 0.99714 1.20784 1.14168 1.22462 0.98119 0.89566 1.24900 0.95155 0.96584 0.95491 1.69851 1.22770 1.39331 1.19752 0.86970 0.80298 0.81273 0.82005 1.19515 1.20638 1.18460 1.20570 0.97530 0.95884 0.94867 1.18535 1.04984 0.93882 0.96441 1.20476 1.02001 1.00648 0.91745 0.92051 0.92280 0.92275 0.90673 0.89932 0.92306 0.95092 0.91854 0.91938 0.83164 0.91437 0.91565 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.15 0.37 -0.75 16 2 C -0.05 -0.45 6.03 -27.89 -0.17 -0.62 16 3 C -0.21 -2.52 5.53 -35.85 -0.20 -2.72 16 4 S 0.26 3.70 22.87 -107.50 -2.46 1.24 16 5 C -0.24 -4.31 6.45 -36.84 -0.24 -4.55 16 6 C 0.52 11.56 7.90 34.01 0.27 11.83 16 7 O -0.52 -12.36 16.10 -19.37 -0.31 -12.67 16 8 O -0.34 -8.30 9.72 -41.03 -0.40 -8.70 16 9 C 0.18 4.71 2.23 -27.89 -0.06 4.65 16 10 H 0.05 1.29 4.31 -51.93 -0.22 1.06 16 11 C -0.15 -3.49 9.53 37.15 0.35 -3.13 16 12 C -0.52 -14.89 9.25 -34.44 -0.32 -15.21 16 13 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 14 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 15 N -0.88 -26.30 13.96 55.43 0.77 -25.53 16 16 Si 0.87 21.67 26.99 -169.99 -4.59 17.09 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.26 -6.34 6.82 56.52 0.39 -5.96 16 20 C -0.06 -0.83 9.79 -40.42 -0.40 -1.22 16 21 C -0.13 -1.53 5.78 -106.46 -0.62 -2.14 16 22 C -0.09 -0.79 9.84 36.01 0.35 -0.43 16 23 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.59 6.57 -51.93 -0.34 0.25 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.15 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.49 6.54 -51.93 -0.34 0.15 16 35 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -31.72 313.49 -7.71 -39.43 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.71 Total: -3.60 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -0.75 Total: -11.99 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.77 Total: -25.53 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.71 Total: -21.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.09 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.46 Total: 1.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.72 -7.71 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.537 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds