Wall clock time and date at job start Mon Mar 30 2020 07:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47158 * 2 1 4 4 S 1.70613 * 124.51966 * 269.95774 * 3 2 1 5 5 C 1.75834 * 91.56609 * 180.02562 * 4 3 2 6 6 C 1.46389 * 125.46103 * 179.97438 * 5 4 3 7 7 O 1.21632 * 119.99782 * 180.02562 * 6 5 4 8 8 O 1.34895 * 120.00271 * 0.02562 * 6 5 4 9 9 C 1.45204 * 117.00380 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46373 * 29.99941 * 9 8 6 11 11 C 1.52995 * 109.47010 * 270.00035 * 9 8 6 12 12 C 1.50698 * 109.47342 * 149.99979 * 9 8 6 13 13 H 1.07999 * 120.00174 * 34.99602 * 12 9 8 14 14 C 1.37876 * 119.99924 * 215.00299 * 12 9 8 15 15 N 1.31513 * 120.00003 * 184.91410 * 14 12 9 16 16 Si 1.86801 * 120.00101 * 4.90887 * 14 12 9 17 17 H 1.48502 * 109.46732 * 84.83604 * 16 14 12 18 18 H 1.48502 * 109.47363 * 204.83620 * 16 14 12 19 19 H 1.48499 * 109.47068 * 324.83991 * 16 14 12 20 20 C 1.36749 * 109.07034 * 0.02562 * 5 4 3 21 21 C 1.33857 * 124.51787 * 89.99929 * 3 2 1 22 22 C 1.50701 * 122.44803 * 359.94093 * 21 3 2 23 23 H 1.09007 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47560 * 300.00067 * 1 2 3 25 25 H 1.08997 * 109.47424 * 60.00096 * 1 2 3 26 26 H 1.09000 * 109.47560 * 239.99933 * 2 1 3 27 27 H 1.09005 * 109.47315 * 119.99548 * 2 1 3 28 28 H 1.08995 * 109.47624 * 295.02726 * 11 9 8 29 29 H 1.09001 * 109.47659 * 55.03408 * 11 9 8 30 30 H 1.09006 * 109.47160 * 175.02511 * 11 9 8 31 31 H 0.97001 * 119.99926 * 179.97438 * 15 14 12 32 32 H 1.08000 * 123.35090 * 180.26758 * 20 5 4 33 33 H 1.09000 * 109.47354 * 269.99934 * 22 21 3 34 34 H 1.08996 * 109.46921 * 30.00395 * 22 21 3 35 35 H 1.08998 * 109.46984 * 149.99894 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3555 2.3320 -1.4057 5 6 2.8474 3.7230 -0.4493 6 6 3.3024 5.0060 -0.9878 7 8 3.6205 5.9043 -0.2320 8 8 3.3689 5.1919 -2.3222 9 6 3.8284 6.4893 -2.7851 10 1 4.5220 6.9099 -2.0569 11 6 2.6299 7.4262 -2.9483 12 6 4.5267 6.3312 -4.1111 13 1 4.1791 5.5944 -4.8201 14 6 5.6096 7.1271 -4.4191 15 7 6.1588 7.0573 -5.6120 16 14 6.2965 8.3048 -3.1421 17 1 7.2532 7.5819 -2.2660 18 1 6.9975 9.4217 -3.8250 19 1 5.1850 8.8468 -2.3200 20 6 2.7379 3.4138 0.8783 21 6 2.2851 2.1360 1.1029 22 6 2.0873 1.5805 2.4898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9804 7.0510 -3.7391 29 1 2.0737 7.4713 -2.0120 30 1 2.9819 8.4241 -3.2101 31 1 6.9205 7.6175 -5.8288 32 1 2.9784 4.1065 1.6711 33 1 1.0710 1.7899 2.8236 34 1 2.2505 0.5029 2.4762 35 1 2.7974 2.0469 3.1726 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113696241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:17 Heat of formation + Delta-G solvation = -93.827288 kcal Electronic energy + Delta-G solvation = -17876.816877 eV Core-core repulsion = 14965.245655 eV Total energy + Delta-G solvation = -2911.571222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33166 -39.66158 -37.61508 -35.22820 -34.74158 -32.71618 -31.30850 -28.43695 -27.51931 -26.37480 -23.62291 -22.90958 -21.62365 -19.93876 -19.38631 -18.86856 -17.84494 -17.14766 -16.97855 -16.36424 -15.48356 -15.27591 -15.01919 -14.68845 -14.63783 -14.30448 -14.10360 -13.73059 -13.41871 -13.16900 -13.11046 -12.99696 -12.94998 -12.70189 -12.62654 -12.20098 -12.05899 -11.97357 -11.66398 -11.57198 -11.47852 -11.25045 -10.91700 -9.75248 -9.40680 -8.50402 -6.60651 -0.65610 0.42585 0.95892 1.17686 1.22939 1.26608 1.37193 1.81967 1.89470 2.17051 2.87429 3.68452 3.83807 4.07469 4.14827 4.17431 4.41651 4.42329 4.52082 4.52966 4.55716 4.74819 4.78578 4.90269 4.91812 5.00273 5.07356 5.15015 5.25673 5.32000 5.34442 5.40313 5.52870 5.55019 6.08496 6.47292 6.76054 7.06804 8.64871 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.004702 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.685321 B = 5953.593380 C = 6320.168182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.182 4.182 4 S 0.239 5.761 5 C -0.298 4.298 6 C 0.523 3.477 7 O -0.545 6.545 8 O -0.357 6.357 9 C 0.182 3.818 10 H 0.038 0.962 11 C -0.147 4.147 12 C -0.532 4.532 13 H 0.049 0.951 14 C 0.038 3.962 15 N -0.920 5.920 16 Si 0.927 3.073 17 H -0.270 1.270 18 H -0.262 1.262 19 H -0.251 1.251 20 C -0.035 4.035 21 C -0.135 4.135 22 C -0.088 4.088 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.277 0.723 32 H 0.154 0.846 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 -14.593 15.343 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.302 4.302 4 S 0.511 5.489 5 C -0.416 4.416 6 C 0.369 3.631 7 O -0.440 6.440 8 O -0.273 6.273 9 C 0.129 3.871 10 H 0.056 0.944 11 C -0.205 4.205 12 C -0.569 4.569 13 H 0.067 0.933 14 C -0.163 4.163 15 N -0.557 5.557 16 Si 0.749 3.251 17 H -0.195 1.195 18 H -0.187 1.187 19 H -0.175 1.175 20 C -0.070 4.070 21 C -0.146 4.146 22 C -0.146 4.146 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.172 0.828 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.702 -14.521 13.753 22.683 hybrid contribution 0.896 1.393 1.424 2.185 sum -9.806 -13.127 15.177 22.334 Atomic orbital electron populations 1.21787 0.93114 1.03275 1.02258 1.20360 0.97012 0.87177 1.04981 1.24793 1.05227 1.03341 0.96871 1.83442 1.57995 1.00523 1.06944 1.23573 1.20788 0.98186 0.99025 1.20325 0.73974 0.86982 0.81780 1.90758 1.48407 1.44723 1.60077 1.86723 1.77241 1.41078 1.22283 1.20905 0.94211 0.78340 0.93630 0.94419 1.22146 0.98019 0.99587 1.00700 1.20879 1.15016 1.21959 0.99089 0.93264 1.25629 0.95242 0.98158 0.97282 1.69947 1.23607 1.40689 1.21484 0.86052 0.79852 0.79591 0.79589 1.19538 1.18673 1.17482 1.20879 0.95303 0.97009 0.93768 1.18853 1.04594 0.92705 0.98481 1.20582 1.03065 1.01773 0.89217 0.89881 0.92024 0.93384 0.89840 0.87413 0.91824 0.93570 0.91257 0.91302 0.82804 0.90031 0.89472 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.06 -0.75 6.03 29.85 0.18 -0.57 16 3 C -0.18 -3.83 5.53 24.69 0.14 -3.69 16 4 S 0.24 6.84 22.87 -56.49 -1.29 5.55 16 5 C -0.30 -10.57 6.45 24.04 0.16 -10.41 16 6 C 0.52 23.59 7.90 69.94 0.55 24.14 16 7 O -0.55 -26.57 16.10 19.41 0.31 -26.26 16 8 O -0.36 -17.80 9.72 -58.10 -0.56 -18.36 16 9 C 0.18 9.61 2.23 29.85 0.07 9.67 16 10 H 0.04 2.05 4.31 -2.38 -0.01 2.04 16 11 C -0.15 -6.70 9.53 71.98 0.69 -6.01 16 12 C -0.53 -31.67 9.25 25.60 0.24 -31.44 16 13 H 0.05 3.21 8.06 -2.91 -0.02 3.18 16 14 C 0.04 2.24 5.47 84.65 0.46 2.71 16 15 N -0.92 -56.14 13.96 21.45 0.30 -55.85 16 16 Si 0.93 44.87 26.99 68.60 1.85 46.72 16 17 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.25 -11.71 6.82 99.48 0.68 -11.03 16 20 C -0.03 -1.00 9.79 21.73 0.21 -0.79 16 21 C -0.13 -2.91 5.78 -21.06 -0.12 -3.03 16 22 C -0.09 -1.18 9.84 71.24 0.70 -0.48 16 23 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.11 0.99 6.57 -2.38 -0.02 0.97 16 28 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 31 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.83 6.54 -2.39 -0.02 0.81 16 35 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 Total: -1.00 -70.74 313.49 5.65 -65.09 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.06 Total: 3.98 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 3.98 Total: -20.87 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.30 Total: -55.85 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.25 Total: -44.62 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.85 Total: 46.72 kcal Atomic # 16 Polarization: 6.84 SS G_CDS: -1.29 Total: 5.55 kcal Total: -70.74 5.65 -65.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.738 kcal (2) G-P(sol) polarization free energy of solvation -70.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds