Wall clock time and date at job start Mon Mar 30 2020 08:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47190 * 300.00069 * 15 13 12 17 17 C 1.52999 * 109.47052 * 60.00301 * 15 13 12 18 18 C 1.50701 * 109.47120 * 180.02562 * 15 13 12 19 19 C 1.33387 * 125.20564 * 180.02562 * 18 15 13 20 20 C 1.38420 * 114.92216 * 179.97438 * 19 18 15 21 21 C 1.33395 * 114.92068 * 359.97438 * 20 19 18 22 22 S 1.75886 * 109.59337 * 359.76318 * 21 20 19 23 23 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 24 24 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 25 25 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 26 26 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 27 27 H 1.09000 * 109.47375 * 60.00386 * 16 15 13 28 28 H 1.08998 * 109.46833 * 179.97438 * 16 15 13 29 29 H 1.08997 * 109.47575 * 300.00009 * 16 15 13 30 30 H 1.09003 * 109.47327 * 59.99854 * 17 15 13 31 31 H 1.08998 * 109.47338 * 179.97438 * 17 15 13 32 32 H 1.09001 * 109.47027 * 299.99933 * 17 15 13 33 33 H 1.07999 * 122.53494 * 359.95770 * 19 18 15 34 34 H 1.07998 * 122.53945 * 180.02562 * 20 19 18 35 35 H 1.08002 * 125.20148 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 6 4.0796 -1.2269 -3.2880 17 6 1.7243 -1.6441 -4.0098 18 6 2.8622 0.4731 -4.6205 19 6 3.2834 0.2486 -5.8661 20 6 3.3331 1.3700 -6.6760 21 6 2.9517 2.5052 -6.0883 22 16 2.4910 2.1809 -4.4221 23 1 -0.3633 0.4034 0.9452 24 1 -0.3633 0.6170 -0.8219 25 1 -0.3634 -1.0202 -0.1233 26 1 1.9014 -1.9131 3.4365 27 1 3.9767 -1.9864 -2.5130 28 1 4.4426 -1.6909 -4.2051 29 1 4.7885 -0.4667 -2.9598 30 1 0.7552 -1.1812 -4.1959 31 1 2.0873 -2.1075 -4.9272 32 1 1.6214 -2.4036 -3.2348 33 1 3.5646 -0.7336 -6.2160 34 1 3.6554 1.3289 -7.7060 35 1 2.9263 3.4745 -6.5640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115915793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:37 Heat of formation + Delta-G solvation = -62.907699 kcal Electronic energy + Delta-G solvation = -18649.788088 eV Core-core repulsion = 15739.557640 eV Total energy + Delta-G solvation = -2910.230448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30087 -37.99998 -36.20007 -34.89123 -33.26526 -30.42564 -28.44568 -27.33493 -25.09594 -24.73460 -23.27502 -21.12880 -19.76517 -18.67118 -17.87121 -16.98866 -16.68982 -15.55394 -15.35553 -15.12700 -14.02469 -13.71417 -13.59701 -13.30353 -12.95092 -12.68941 -12.53977 -12.32341 -12.25180 -12.03605 -11.90496 -11.72216 -11.58141 -11.26275 -11.01148 -10.65088 -10.57075 -10.22531 -10.03461 -9.80500 -9.37245 -9.06386 -8.50394 -8.36915 -8.16230 -6.70574 -4.28601 1.18105 1.92507 2.41823 2.62211 2.88124 3.30624 3.35202 3.37958 3.53601 4.34916 4.46855 4.93282 5.00070 5.01906 5.19201 5.23413 5.55005 5.60820 5.64190 5.77032 5.80133 5.85545 6.12150 6.14277 6.20271 6.24646 6.39323 6.41058 6.45568 6.60390 6.66055 7.08173 7.26323 7.75282 8.18351 8.32338 8.77410 9.36102 10.70284 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.005657 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.371664 B = 4948.217313 C = 5444.727173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.196 3.804 3 H 0.038 0.962 4 C -0.615 4.615 5 H 0.070 0.930 6 C 0.048 3.952 7 N -0.884 5.884 8 Si 1.028 2.972 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.274 1.274 12 O -0.331 6.331 13 C 0.460 3.540 14 O -0.506 6.506 15 C 0.015 3.985 16 C -0.134 4.134 17 C -0.133 4.133 18 C -0.188 4.188 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.275 4.275 22 S 0.226 5.774 23 H 0.069 0.931 24 H 0.030 0.970 25 H 0.054 0.946 26 H 0.274 0.726 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 1.804 -17.780 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.142 3.858 3 H 0.056 0.944 4 C -0.652 4.652 5 H 0.088 0.912 6 C -0.160 4.160 7 N -0.516 5.516 8 Si 0.854 3.146 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.200 1.200 12 O -0.245 6.245 13 C 0.303 3.697 14 O -0.398 6.398 15 C 0.011 3.989 16 C -0.192 4.192 17 C -0.191 4.191 18 C -0.306 4.306 19 C -0.166 4.166 20 C -0.176 4.176 21 C -0.411 4.411 22 S 0.492 5.508 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.732 4.243 -15.373 15.965 hybrid contribution 0.794 -1.935 -2.390 3.176 sum 1.527 2.309 -17.763 17.978 Atomic orbital electron populations 1.22498 0.97907 1.00946 1.00856 1.20943 0.91027 0.94016 0.79778 0.94421 1.21826 1.42313 1.11660 0.89424 0.91196 1.25603 0.93184 1.05914 0.91303 1.70853 1.42522 1.06703 1.31500 0.84271 0.77828 0.75712 0.76788 1.20314 1.20419 1.19964 1.86554 1.75039 1.42487 1.20448 1.23368 0.74152 0.85764 0.86371 1.90311 1.49823 1.16958 1.82706 1.18859 0.98722 0.93654 0.87630 1.21857 0.93123 1.01162 1.03014 1.21854 0.97776 0.97169 1.02299 1.24280 1.09635 0.98485 0.98237 1.19821 1.04340 0.99957 0.92481 1.19937 1.04976 0.91925 1.00771 1.26651 1.08348 1.02187 1.03886 1.85662 1.61618 1.00204 1.03340 0.91200 0.95050 0.92681 0.91615 0.90211 0.91078 0.91840 0.91982 0.91015 0.90296 0.84914 0.85575 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.27 37.16 0.34 -3.38 16 2 C 0.20 4.88 2.15 -27.89 -0.06 4.82 16 3 H 0.04 0.98 5.73 -51.93 -0.30 0.68 16 4 C -0.62 -17.25 9.11 -34.44 -0.31 -17.56 16 5 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 6 C 0.05 1.34 5.19 -17.82 -0.09 1.25 16 7 N -0.88 -26.16 13.70 55.43 0.76 -25.40 16 8 Si 1.03 24.69 26.44 -169.99 -4.50 20.20 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.15 6.15 56.52 0.35 -5.81 16 12 O -0.33 -7.42 9.67 -39.26 -0.38 -7.80 16 13 C 0.46 9.07 6.52 36.01 0.23 9.30 16 14 O -0.51 -10.78 12.08 -18.75 -0.23 -11.01 16 15 C 0.01 0.22 0.85 -156.81 -0.13 0.09 16 16 C -0.13 -1.78 8.27 37.16 0.31 -1.47 16 17 C -0.13 -1.69 8.27 37.16 0.31 -1.38 16 18 C -0.19 -2.76 5.12 -36.00 -0.18 -2.95 16 19 C -0.13 -1.68 9.31 -41.21 -0.38 -2.07 16 20 C -0.15 -1.75 10.18 -41.21 -0.42 -2.17 16 21 C -0.28 -3.49 11.23 29.04 0.33 -3.16 16 22 S 0.23 3.50 19.59 -107.50 -2.11 1.40 16 23 H 0.07 1.61 5.48 -51.93 -0.28 1.32 16 24 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 27 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 28 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 33 H 0.13 1.35 8.01 -52.49 -0.42 0.93 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 304.09 15.07 4.58 4.58 Total: -1.00 -30.09 304.09 -6.77 -36.86 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.84 Total: -0.14 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.07 Total: -18.69 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.76 Total: -25.40 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.61 Total: -18.80 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.50 Total: 20.20 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.11 Total: 1.40 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.09 -6.77 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115915793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.048 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds