Wall clock time and date at job start Mon Mar 30 2020 08:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46997 * 120.00023 * 2 1 3 5 5 H 1.08000 * 120.00302 * 114.36344 * 4 2 1 6 6 C 1.37886 * 120.00163 * 294.36365 * 4 2 1 7 7 N 1.31511 * 119.99772 * 156.60071 * 6 4 2 8 8 Si 1.86801 * 119.99628 * 336.87625 * 6 4 2 9 9 H 1.48498 * 109.46677 * 179.72810 * 8 6 4 10 10 H 1.48500 * 109.47133 * 299.72373 * 8 6 4 11 11 H 1.48495 * 109.47357 * 59.72138 * 8 6 4 12 12 O 1.45200 * 109.47139 * 240.00135 * 2 1 3 13 13 C 1.34231 * 117.00204 * 89.99914 * 12 2 1 14 14 O 1.20821 * 119.99993 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99878 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47190 * 300.00069 * 15 13 12 17 17 C 1.52999 * 109.47052 * 60.00301 * 15 13 12 18 18 C 1.50701 * 109.47120 * 180.02562 * 15 13 12 19 19 C 1.33387 * 125.20564 * 180.02562 * 18 15 13 20 20 C 1.38420 * 114.92216 * 179.97438 * 19 18 15 21 21 C 1.33395 * 114.92068 * 359.97438 * 20 19 18 22 22 S 1.75886 * 109.59337 * 359.76318 * 21 20 19 23 23 H 1.09003 * 109.46967 * 293.11361 * 1 2 3 24 24 H 1.09007 * 109.46955 * 53.10589 * 1 2 3 25 25 H 1.08994 * 109.47507 * 173.10845 * 1 2 3 26 26 H 0.96991 * 120.00582 * 355.20986 * 7 6 4 27 27 H 1.09000 * 109.47375 * 60.00386 * 16 15 13 28 28 H 1.08998 * 109.46833 * 179.97438 * 16 15 13 29 29 H 1.08997 * 109.47575 * 300.00009 * 16 15 13 30 30 H 1.09003 * 109.47327 * 59.99854 * 17 15 13 31 31 H 1.08998 * 109.47338 * 179.97438 * 17 15 13 32 32 H 1.09001 * 109.47027 * 299.99933 * 17 15 13 33 33 H 1.07999 * 122.53494 * 359.95770 * 19 18 15 34 34 H 1.07998 * 122.53945 * 180.02562 * 20 19 18 35 35 H 1.08002 * 125.20148 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5760 -1.6385 1.1340 6 6 1.7977 -0.1755 2.4794 7 7 1.8023 -0.9538 3.5395 8 14 1.4656 1.6534 2.6648 9 1 1.2397 1.9727 4.0973 10 1 2.6338 2.4218 2.1647 11 1 0.2595 2.0196 1.8797 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9982 1.2518 -2.2504 15 6 2.7193 -0.5770 -3.5492 16 6 4.0796 -1.2269 -3.2880 17 6 1.7243 -1.6441 -4.0098 18 6 2.8622 0.4731 -4.6205 19 6 3.2834 0.2486 -5.8661 20 6 3.3331 1.3700 -6.6760 21 6 2.9517 2.5052 -6.0883 22 16 2.4910 2.1809 -4.4221 23 1 -0.3633 0.4034 0.9452 24 1 -0.3633 0.6170 -0.8219 25 1 -0.3634 -1.0202 -0.1233 26 1 1.9014 -1.9131 3.4365 27 1 3.9767 -1.9864 -2.5130 28 1 4.4426 -1.6909 -4.2051 29 1 4.7885 -0.4667 -2.9598 30 1 0.7552 -1.1812 -4.1959 31 1 2.0873 -2.1075 -4.9272 32 1 1.6214 -2.4036 -3.2348 33 1 3.5646 -0.7336 -6.2160 34 1 3.6554 1.3289 -7.7060 35 1 2.9263 3.4745 -6.5640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115915793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:36 Heat of formation + Delta-G solvation = -79.704727 kcal Electronic energy + Delta-G solvation = -18650.516462 eV Core-core repulsion = 15739.557640 eV Total energy + Delta-G solvation = -2910.958822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83055 -39.14514 -37.83909 -36.08166 -35.33168 -32.39556 -29.47179 -28.35866 -27.08298 -25.98357 -24.61739 -22.69503 -21.36434 -19.91667 -19.67497 -18.46105 -18.21850 -17.09612 -16.69878 -16.22301 -15.79765 -15.05936 -14.97051 -14.85906 -14.71069 -14.14319 -13.88678 -13.63171 -13.43743 -13.40142 -13.29272 -13.01932 -12.83743 -12.55976 -12.34528 -12.25007 -12.08523 -11.92443 -11.72902 -11.67813 -11.12839 -10.68563 -10.55907 -9.51804 -9.28880 -8.96513 -6.55223 0.16803 0.84584 1.10706 1.33756 1.39190 1.43462 1.64227 1.90977 1.93486 2.34025 2.83051 3.32626 3.67839 3.90798 3.92704 4.22201 4.32105 4.49261 4.55291 4.59962 4.68163 4.69682 4.75390 4.76588 4.82424 4.89307 5.13481 5.17629 5.24368 5.27506 5.41255 5.45294 5.69308 5.80575 5.91673 6.36281 6.75941 7.17754 8.43907 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.005657 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.371664 B = 4948.217313 C = 5444.727173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.196 3.804 3 H 0.028 0.972 4 C -0.624 4.624 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.909 5.909 8 Si 1.063 2.937 9 H -0.271 1.271 10 H -0.271 1.271 11 H -0.248 1.248 12 O -0.344 6.344 13 C 0.450 3.550 14 O -0.524 6.524 15 C 0.021 3.979 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.203 4.203 19 C -0.117 4.117 20 C -0.145 4.145 21 C -0.262 4.262 22 S 0.139 5.861 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 2.134 -20.835 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.142 3.858 3 H 0.046 0.954 4 C -0.661 4.661 5 H 0.054 0.946 6 C -0.194 4.194 7 N -0.541 5.541 8 Si 0.883 3.117 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.172 1.172 12 O -0.259 6.259 13 C 0.294 3.706 14 O -0.416 6.416 15 C 0.018 3.982 16 C -0.189 4.189 17 C -0.188 4.188 18 C -0.321 4.321 19 C -0.148 4.148 20 C -0.174 4.174 21 C -0.397 4.397 22 S 0.404 5.596 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.905 4.558 -18.455 19.031 hybrid contribution 0.831 -2.078 -1.600 2.751 sum 1.737 2.481 -20.055 20.282 Atomic orbital electron populations 1.22364 0.96104 1.01596 1.01361 1.20663 0.92248 0.92944 0.79935 0.95412 1.21921 1.42092 1.10614 0.91473 0.94631 1.26834 0.92386 1.09180 0.91010 1.70949 1.44605 1.06265 1.32323 0.83822 0.79097 0.71185 0.77592 1.19555 1.19652 1.17232 1.86528 1.75723 1.42911 1.20773 1.24433 0.73557 0.85795 0.86795 1.90342 1.50209 1.17783 1.83247 1.18981 0.99802 0.94208 0.85198 1.21898 0.91924 1.00491 1.04608 1.21899 0.97016 0.96210 1.03642 1.24220 1.11822 0.97003 0.99046 1.20220 1.01823 1.01599 0.91204 1.20353 1.03759 0.91181 1.02143 1.26745 1.07828 1.03722 1.01398 1.85898 1.63970 1.02741 1.07020 0.91515 0.93294 0.92310 0.92800 0.91201 0.87244 0.93183 0.92601 0.87388 0.90934 0.81653 0.82258 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.04 9.27 71.98 0.67 -6.37 16 2 C 0.20 9.90 2.15 29.85 0.06 9.96 16 3 H 0.03 1.46 5.73 -2.38 -0.01 1.45 16 4 C -0.62 -36.04 9.11 25.60 0.23 -35.81 16 5 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 6 C 0.01 0.48 5.19 84.66 0.44 0.92 16 7 N -0.91 -55.04 13.70 21.45 0.29 -54.75 16 8 Si 1.06 49.66 26.44 68.60 1.81 51.48 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.25 -10.52 6.15 99.48 0.61 -9.91 16 12 O -0.34 -15.70 9.67 -51.42 -0.50 -16.20 16 13 C 0.45 17.79 6.52 71.24 0.46 18.25 16 14 O -0.52 -22.62 12.08 21.98 0.27 -22.35 16 15 C 0.02 0.61 0.85 -53.67 -0.05 0.56 16 16 C -0.13 -3.27 8.27 71.98 0.59 -2.68 16 17 C -0.13 -3.00 8.27 71.98 0.60 -2.40 16 18 C -0.20 -5.54 5.12 24.59 0.13 -5.41 16 19 C -0.12 -2.43 9.31 21.21 0.20 -2.24 16 20 C -0.14 -2.84 10.18 21.22 0.22 -2.63 16 21 C -0.26 -5.93 11.23 66.72 0.75 -5.18 16 22 S 0.14 4.23 19.59 -56.49 -1.11 3.12 16 23 H 0.07 3.00 5.48 -2.39 -0.01 2.99 16 24 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.26 16.01 8.73 -92.71 -0.81 15.20 16 27 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 28 H 0.11 1.85 7.94 -2.39 -0.02 1.83 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.69 7.94 -2.39 -0.02 1.67 16 32 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 33 H 0.17 2.34 8.01 -2.91 -0.02 2.32 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -67.17 304.09 6.01 -61.16 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.94 Total: 10.56 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 4.30 Total: -33.02 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.29 Total: -54.75 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.23 Total: -38.55 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.81 Total: 51.48 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.11 Total: 3.12 kcal Total: -67.17 6.01 -61.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115915793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.542 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds