Wall clock time and date at job start Mon Mar 30 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47370 * 2 1 4 4 N 1.46500 * 109.46589 * 119.99452 * 2 1 3 5 5 C 1.36889 * 119.99884 * 81.92737 * 4 2 1 6 6 H 1.08006 * 119.99782 * 207.41354 * 5 4 2 7 7 C 1.39038 * 120.00219 * 27.41547 * 5 4 2 8 8 N 1.31376 * 119.99836 * 24.29901 * 7 5 4 9 9 Si 1.86792 * 120.00204 * 204.30321 * 7 5 4 10 10 H 1.48500 * 109.47019 * 89.99687 * 9 7 5 11 11 H 1.48499 * 109.47413 * 209.99673 * 9 7 5 12 12 H 1.48506 * 109.47060 * 330.00137 * 9 7 5 13 13 C 1.34779 * 120.00121 * 261.92240 * 4 2 1 14 14 O 1.21602 * 119.99808 * 203.86171 * 13 4 2 15 15 C 1.47662 * 120.00048 * 23.86466 * 13 4 2 16 16 C 1.40149 * 120.55201 * 186.93593 * 15 13 4 17 17 C 1.38246 * 118.30119 * 179.97438 * 16 15 13 18 18 C 1.38569 * 119.29866 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.46747 * 179.97438 * 18 17 16 20 20 N 1.32048 * 121.06131 * 359.97438 * 18 17 16 21 21 C 1.31679 * 121.86864 * 0.02562 * 20 18 17 22 22 H 1.09000 * 109.48008 * 274.46012 * 1 2 3 23 23 H 1.09008 * 109.46856 * 34.45826 * 1 2 3 24 24 H 1.09001 * 109.47260 * 154.45330 * 1 2 3 25 25 H 1.08996 * 109.47658 * 239.99305 * 2 1 3 26 26 H 1.08994 * 109.47252 * 227.77743 * 3 2 1 27 27 H 1.09010 * 109.46646 * 347.77686 * 3 2 1 28 28 H 1.08993 * 109.47476 * 107.77219 * 3 2 1 29 29 H 0.96992 * 119.99964 * 179.97438 * 8 7 5 30 30 H 1.07997 * 120.85410 * 359.96097 * 16 15 13 31 31 H 1.08001 * 120.34998 * 179.72654 * 17 16 15 32 32 H 1.07998 * 119.71394 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.0893 -2.0574 1.2164 6 1 2.0099 -2.5885 2.1535 7 6 2.2637 -2.7621 0.0306 8 7 2.8235 -2.1778 -1.0044 9 14 1.7021 -4.5394 -0.0910 10 1 0.2946 -4.5826 -0.5625 11 1 2.5686 -5.2677 -1.0522 12 1 1.7964 -5.1808 1.2450 13 6 2.3974 0.0200 2.2770 14 8 3.1803 -0.4584 3.0750 15 6 1.8621 1.3793 2.4919 16 6 2.3552 2.1835 3.5284 17 6 1.8210 3.4487 3.6871 18 6 0.8244 3.8770 2.8250 19 17 0.1501 5.4646 3.0207 20 7 0.3793 3.0970 1.8569 21 6 0.8566 1.8847 1.6660 22 1 -0.3635 0.0799 1.0245 23 1 -0.3633 0.8474 -0.5815 24 1 -0.3634 -0.9272 -0.4432 25 1 1.8934 -0.5139 -0.8899 26 1 2.8122 1.5548 -0.7610 27 1 1.2141 2.1199 -0.2176 28 1 2.4569 1.6805 0.9785 29 1 2.9455 -2.6694 -1.8316 30 1 3.1324 1.8240 4.1865 31 1 2.1734 4.0945 4.4778 32 1 0.4673 1.2765 0.8629 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126828469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:15 Heat of formation + Delta-G solvation = 89.792167 kcal Electronic energy + Delta-G solvation = -18879.136714 eV Core-core repulsion = 15869.943779 eV Total energy + Delta-G solvation = -3009.192934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.99442 -39.92679 -38.02617 -37.60154 -35.27839 -33.64370 -32.82592 -31.63932 -28.30832 -27.21186 -25.11293 -24.89289 -22.83017 -21.01944 -19.19020 -18.80162 -17.88814 -17.50543 -16.86029 -16.38896 -16.24784 -15.83959 -15.44116 -14.89675 -14.52758 -14.12771 -13.99573 -13.82324 -13.33839 -13.28478 -13.01640 -12.69380 -12.39528 -12.35184 -12.21796 -12.20953 -12.06806 -11.48609 -11.11845 -10.98352 -10.80290 -10.39104 -9.60556 -9.43299 -8.35669 -6.03512 -0.52941 0.14798 0.72481 1.38817 1.45199 1.56427 1.87884 2.23670 2.62877 2.81578 3.04938 3.36019 3.66818 3.73729 3.86974 3.98864 4.02603 4.13353 4.35976 4.47235 4.63552 4.74411 4.79004 4.86979 5.05727 5.10232 5.31283 5.35471 5.40654 5.60532 6.06741 6.45234 6.56598 7.06943 7.32211 7.86916 8.58040 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.038472 B = 0.005646 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.627976 B = 4958.405421 C = 5331.481383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 C -0.210 4.210 4 N -0.435 5.435 5 C -0.333 4.333 6 H 0.074 0.926 7 C 0.006 3.994 8 N -0.873 5.873 9 Si 0.987 3.013 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.274 1.274 13 C 0.475 3.525 14 O -0.622 6.622 15 C -0.192 4.192 16 C -0.032 4.032 17 C -0.162 4.162 18 C 0.170 3.830 19 Cl -0.020 7.020 20 N -0.509 5.509 21 C 0.124 3.876 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.129 0.871 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.280 0.720 30 H 0.150 0.850 31 H 0.179 0.821 32 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 10.302 1.348 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 C -0.266 4.266 4 N -0.151 5.151 5 C -0.461 4.461 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.511 5.511 9 Si 0.810 3.190 10 H -0.183 1.183 11 H -0.202 1.202 12 H -0.199 1.199 13 C 0.266 3.734 14 O -0.510 6.510 15 C -0.197 4.197 16 C -0.058 4.058 17 C -0.182 4.182 18 C 0.008 3.992 19 Cl 0.009 6.991 20 N -0.221 5.221 21 C -0.033 4.033 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.086 0.914 25 H 0.146 0.854 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.168 0.832 31 H 0.196 0.804 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.473 10.478 0.985 12.355 hybrid contribution 0.858 -1.105 0.507 1.488 sum -5.615 9.372 1.492 11.027 Atomic orbital electron populations 1.22363 0.94793 1.03817 1.02263 1.21900 0.94241 0.92561 0.92778 1.24025 1.02687 0.96134 1.03780 1.43752 1.53616 1.05675 1.12103 1.19624 1.50252 0.81001 0.95186 0.90784 1.26112 0.94545 1.04071 0.95041 1.69756 1.36651 1.39911 1.04736 0.85020 0.79018 0.76719 0.78215 1.18255 1.20186 1.19904 1.18336 0.83955 0.85416 0.85647 1.90563 1.37295 1.72676 1.50471 1.21215 1.01642 0.96656 1.00197 1.21756 0.97431 0.92301 0.94347 1.21883 0.97645 0.96768 1.01942 1.22143 0.93835 0.89503 0.93701 1.98385 1.84853 1.19845 1.96023 1.67263 1.28793 1.05388 1.20699 1.25942 0.89581 0.91609 0.96185 0.91833 0.88139 0.91358 0.85446 0.92489 0.87921 0.89889 0.90984 0.83230 0.80358 0.74988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.87 8.14 71.98 0.59 -5.28 16 2 C 0.09 3.67 2.72 44.99 0.12 3.79 16 3 C -0.21 -7.65 7.68 71.83 0.55 -7.10 16 4 N -0.43 -21.70 2.54 -616.56 -1.57 -23.27 16 5 C -0.33 -17.98 8.96 84.10 0.75 -17.23 16 6 H 0.07 4.25 7.90 -2.91 -0.02 4.22 16 7 C 0.01 0.31 5.04 84.95 0.43 0.74 16 8 N -0.87 -44.04 10.90 21.68 0.24 -43.80 16 9 Si 0.99 39.42 29.62 68.60 2.03 41.45 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 11 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 13 C 0.48 23.85 6.74 86.73 0.58 24.43 16 14 O -0.62 -35.91 16.54 -4.04 -0.07 -35.98 16 15 C -0.19 -7.63 4.01 -20.00 -0.08 -7.71 16 16 C -0.03 -1.09 9.71 22.74 0.22 -0.87 16 17 C -0.16 -4.35 9.86 22.35 0.22 -4.13 16 18 C 0.17 4.87 7.27 84.74 0.62 5.48 16 19 Cl -0.02 -0.45 29.10 -2.72 -0.08 -0.53 16 20 N -0.51 -16.36 10.27 -196.09 -2.01 -18.37 16 21 C 0.12 4.33 5.71 84.89 0.48 4.82 16 22 H 0.06 2.17 6.54 -2.39 -0.02 2.15 16 23 H 0.10 2.62 7.28 -2.38 -0.02 2.60 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.13 5.89 4.99 -2.39 -0.01 5.88 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.10 3.15 5.56 -2.38 -0.01 3.14 16 28 H 0.08 3.30 3.03 -41.92 -0.13 3.17 16 29 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 30 H 0.15 4.98 7.75 -2.91 -0.02 4.96 16 31 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.24 7.88 0.68 -46.51 -0.03 7.85 16 Total: -1.00 -63.08 272.51 4.06 -59.03 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 1.03 Total: 24.52 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.49 Total: -3.04 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.34 Total: -85.44 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.07 Total: -35.98 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -63.08 4.06 -59.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126828469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.819 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds