Wall clock time and date at job start Mon Mar 30 2020 07:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.46997 * 119.99820 * 2 1 3 5 5 C 1.36885 * 120.00302 * 131.00723 * 4 2 1 6 6 H 1.07994 * 120.00175 * 172.87443 * 5 4 2 7 7 C 1.39035 * 119.99519 * 352.87400 * 5 4 2 8 8 N 1.31367 * 119.99915 * 127.54750 * 7 5 4 9 9 Si 1.86805 * 120.00267 * 307.54260 * 7 5 4 10 10 H 1.48498 * 109.47213 * 82.32411 * 9 7 5 11 11 H 1.48497 * 109.47152 * 202.32582 * 9 7 5 12 12 H 1.48503 * 109.46780 * 322.32331 * 9 7 5 13 13 C 1.34781 * 120.00117 * 311.00404 * 4 2 1 14 14 O 1.21604 * 119.99678 * 359.81341 * 13 4 2 15 15 C 1.47646 * 120.00208 * 179.80873 * 13 4 2 16 16 C 1.40082 * 120.57322 * 312.20432 * 15 13 4 17 17 C 1.38335 * 118.29181 * 180.28228 * 16 15 13 18 18 C 1.38363 * 119.34998 * 359.44668 * 17 16 15 19 19 N 1.31925 * 121.12165 * 0.27201 * 18 17 16 20 20 C 1.31814 * 121.86495 * 0.02562 * 19 18 17 21 21 Cl 1.73595 * 119.73879 * 179.97438 * 20 19 18 22 22 H 1.08994 * 109.47019 * 328.51084 * 1 2 3 23 23 H 1.09002 * 109.46721 * 88.51531 * 1 2 3 24 24 H 1.09004 * 109.46864 * 208.50939 * 1 2 3 25 25 H 1.08993 * 109.47349 * 239.99802 * 2 1 3 26 26 H 1.09000 * 109.46857 * 185.09798 * 3 2 1 27 27 H 1.09002 * 109.47095 * 305.10216 * 3 2 1 28 28 H 1.09000 * 109.46947 * 65.09730 * 3 2 1 29 29 H 0.97005 * 120.00209 * 179.97438 * 8 7 5 30 30 H 1.07992 * 120.85405 * 0.02562 * 16 15 13 31 31 H 1.08005 * 120.32186 * 179.71459 * 17 16 15 32 32 H 1.08004 * 119.43439 * 180.25820 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.9798 -1.6583 1.0833 6 1 3.4225 -2.0859 1.9707 7 6 3.3865 -2.0908 -0.1739 8 7 4.6630 -2.1002 -0.4842 9 14 2.1178 -2.6586 -1.4220 10 1 1.5377 -1.4777 -2.1105 11 1 2.7681 -3.5441 -2.4211 12 1 1.0391 -3.4055 -0.7264 13 6 1.5209 -0.3730 2.4079 14 8 0.6693 0.4891 2.5086 15 6 2.0100 -1.0719 3.6130 16 6 2.1088 -2.4691 3.6356 17 6 2.5673 -3.0754 4.7914 18 6 2.9216 -2.2904 5.8743 19 7 2.8243 -0.9757 5.8244 20 6 2.3878 -0.3506 4.7491 21 17 2.2814 1.3821 4.7440 22 1 -0.3633 0.8763 0.5368 23 1 -0.3633 0.0266 -1.0274 24 1 -0.3633 -0.9031 0.4905 25 1 1.8934 -0.5138 -0.8899 26 1 3.1262 1.4438 -0.0913 27 1 1.6040 1.9820 -0.8408 28 1 1.7531 1.9293 0.9321 29 1 4.9468 -2.4022 -1.3612 30 1 1.8302 -3.0580 2.7743 31 1 2.6520 -4.1507 4.8463 32 1 3.2837 -2.7621 6.7759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127235129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:27 Heat of formation + Delta-G solvation = 20.902585 kcal Electronic energy + Delta-G solvation = -18882.678954 eV Core-core repulsion = 15870.498743 eV Total energy + Delta-G solvation = -3012.180211 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.04001 -38.56538 -36.04202 -35.17908 -33.10870 -32.36761 -31.15505 -30.14346 -26.46804 -25.31296 -23.82542 -23.14998 -21.45932 -19.15991 -17.92053 -16.73959 -16.25397 -15.80769 -15.19286 -14.68303 -14.20001 -13.93408 -13.62060 -13.55791 -12.97814 -12.77939 -12.50735 -12.21560 -11.87415 -11.54703 -11.47605 -11.35761 -11.19821 -10.79691 -10.66833 -10.49043 -10.35881 -9.68043 -9.41353 -9.35950 -9.03608 -8.47139 -8.32259 -8.22794 -6.94566 -3.88523 1.20442 1.56109 2.37204 2.89097 3.11243 3.16415 3.61078 3.90634 4.09593 4.17481 4.67996 4.91857 5.24817 5.39414 5.42241 5.62636 5.67483 5.90930 5.95840 6.10139 6.22545 6.39700 6.47347 6.51874 6.55708 6.61568 6.86179 6.98574 6.99716 7.07591 7.70571 8.05821 8.08997 8.76690 9.30115 9.67267 10.10327 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.008960 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.120732 B = 3124.298186 C = 3878.458735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 C -0.155 4.155 4 N -0.416 5.416 5 C -0.398 4.398 6 H 0.115 0.885 7 C 0.096 3.904 8 N -0.779 5.779 9 Si 0.829 3.171 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.484 3.516 14 O -0.584 6.584 15 C -0.110 4.110 16 C -0.026 4.026 17 C -0.183 4.183 18 C 0.108 3.892 19 N -0.490 5.490 20 C 0.199 3.801 21 Cl -0.022 7.022 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.280 0.720 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -1.652 3.709 4.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 C -0.213 4.213 4 N -0.133 5.133 5 C -0.521 4.521 6 H 0.132 0.868 7 C -0.120 4.120 8 N -0.407 5.407 9 Si 0.652 3.348 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.184 1.184 13 C 0.274 3.726 14 O -0.471 6.471 15 C -0.116 4.116 16 C -0.052 4.052 17 C -0.203 4.203 18 C -0.050 4.050 19 N -0.201 5.201 20 C 0.034 3.966 21 Cl 0.007 6.993 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.671 -0.609 4.301 5.099 hybrid contribution -0.492 -1.028 -1.491 1.876 sum -3.163 -1.637 2.811 4.536 Atomic orbital electron populations 1.22120 0.95260 1.03487 1.00076 1.21381 0.94084 0.93697 0.89154 1.22055 1.01125 0.96071 1.02026 1.43787 1.34008 1.31419 1.04057 1.19113 1.16654 1.21318 0.95004 0.86778 1.24972 0.94814 0.95769 0.96428 1.70345 1.17064 1.31631 1.21668 0.87991 0.84789 0.80114 0.81863 1.18684 1.21030 1.18427 1.17264 0.85845 0.86943 0.82582 1.90653 1.34938 1.35813 1.85715 1.20723 1.01074 0.94322 0.95471 1.21970 0.92298 0.93189 0.97769 1.22098 1.02384 1.01574 0.94249 1.22578 0.96229 0.87790 0.98355 1.66950 1.15144 1.11457 1.26574 1.21634 0.97183 0.87579 0.90231 1.98388 1.96037 1.06645 1.98247 0.90652 0.93764 0.92733 0.89279 0.92599 0.93019 0.91328 0.90974 0.82728 0.84341 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.18 37.16 0.30 -2.70 16 2 C 0.12 2.60 2.17 -67.93 -0.15 2.45 16 3 C -0.15 -3.11 9.15 37.16 0.34 -2.77 16 4 N -0.42 -9.71 2.46 -108.86 -0.27 -9.98 16 5 C -0.40 -9.64 8.26 -15.00 -0.12 -9.77 16 6 H 0.11 2.83 5.31 -52.49 -0.28 2.55 16 7 C 0.10 2.30 4.82 -17.45 -0.08 2.22 16 8 N -0.78 -19.38 13.95 55.50 0.77 -18.61 16 9 Si 0.83 17.72 26.31 -169.99 -4.47 13.24 16 10 H -0.26 -5.39 6.03 56.52 0.34 -5.05 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.48 11.23 6.08 -12.42 -0.08 11.15 16 14 O -0.58 -14.13 12.66 5.27 0.07 -14.07 16 15 C -0.11 -2.33 5.06 -104.79 -0.53 -2.86 16 16 C -0.03 -0.47 7.59 -38.85 -0.30 -0.77 16 17 C -0.18 -2.72 10.09 -39.50 -0.40 -3.12 16 18 C 0.11 1.63 11.17 -17.47 -0.20 1.44 16 19 N -0.49 -9.12 10.33 -9.99 -0.10 -9.22 16 20 C 0.20 4.09 7.30 -16.98 -0.12 3.97 16 21 Cl -0.02 -0.44 27.31 -51.86 -1.42 -1.85 16 22 H 0.07 1.51 6.81 -51.93 -0.35 1.16 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.12 7.91 -51.93 -0.41 0.71 16 25 H 0.09 1.98 2.76 -51.93 -0.14 1.83 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.45 6.91 -51.93 -0.36 1.09 16 29 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.16 2.80 7.07 -52.49 -0.37 2.43 16 31 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -27.34 278.75 -5.77 -33.12 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.23 Total: 3.92 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.33 Total: -0.75 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.40 Total: -37.81 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.07 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -4.47 Total: 13.24 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.42 Total: -1.85 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.34 -5.77 -33.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127235129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.020 kcal (2) G-P(sol) polarization free energy of solvation -27.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds