Wall clock time and date at job start Mon Mar 30 2020 07:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47264 * 2 1 4 4 N 1.46505 * 109.46842 * 180.02562 * 3 2 1 5 5 C 1.36778 * 120.00139 * 264.46174 * 4 3 2 6 6 H 1.07997 * 120.00155 * 132.00586 * 5 4 3 7 7 C 1.39114 * 119.99897 * 312.00490 * 5 4 3 8 8 N 1.31318 * 119.99995 * 3.26726 * 7 5 4 9 9 Si 1.86799 * 119.99819 * 183.27467 * 7 5 4 10 10 H 1.48499 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47379 * 119.99929 * 9 7 5 12 12 H 1.48511 * 109.46576 * 239.99672 * 9 7 5 13 13 C 1.34777 * 119.99942 * 84.46447 * 4 3 2 14 14 O 1.21574 * 120.00136 * 4.82962 * 13 4 3 15 15 C 1.48013 * 120.00004 * 184.82767 * 13 4 3 16 16 C 1.39364 * 119.72308 * 174.17869 * 15 13 4 17 17 C 1.38697 * 119.02959 * 179.70010 * 16 15 13 18 18 Cl 1.73605 * 120.76345 * 180.25263 * 17 16 15 19 19 C 1.38800 * 118.47440 * 0.27537 * 17 16 15 20 20 C 1.38494 * 119.35222 * 0.02562 * 19 17 16 21 21 N 1.31551 * 120.92724 * 359.97438 * 20 19 17 22 22 H 1.08993 * 109.47146 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46971 * 300.00230 * 1 2 3 24 24 H 1.09004 * 109.46597 * 59.99983 * 1 2 3 25 25 H 1.09010 * 109.46856 * 240.00021 * 2 1 3 26 26 H 1.09000 * 109.47268 * 120.00279 * 2 1 3 27 27 H 1.08995 * 109.47129 * 60.00642 * 3 2 1 28 28 H 1.09004 * 109.47327 * 299.99569 * 3 2 1 29 29 H 0.97002 * 119.99875 * 180.02562 * 8 7 5 30 30 H 1.07992 * 120.48335 * 359.97438 * 16 15 13 31 31 H 1.08004 * 120.32582 * 179.97438 * 19 17 16 32 32 H 1.07998 * 119.53605 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1895 1.5565 1.1781 6 1 5.0016 0.8796 1.3987 7 6 3.8396 2.5445 2.0928 8 7 2.8118 3.3261 1.8538 9 14 4.8318 2.7593 3.6608 10 1 5.9305 1.7607 3.6921 11 1 5.4055 4.1284 3.6999 12 1 3.9478 2.5593 4.8372 13 6 4.1785 1.3299 -1.1627 14 8 3.5734 1.3170 -2.2171 15 6 5.6546 1.2222 -1.1552 16 6 6.3362 0.9842 -2.3473 17 6 7.7199 0.8922 -2.3247 18 17 8.6146 0.6034 -3.7841 19 6 8.3729 1.0358 -1.1083 20 6 7.6302 1.2644 0.0380 21 7 6.3182 1.3473 -0.0117 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6768 1.9564 -0.8900 29 1 2.5680 4.0153 2.4915 30 1 5.7951 0.8775 -3.2758 31 1 9.4496 0.9691 -1.0562 32 1 8.1352 1.3762 0.9861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127537688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:04 Heat of formation + Delta-G solvation = 3.736997 kcal Electronic energy + Delta-G solvation = -18262.150529 eV Core-core repulsion = 15249.225962 eV Total energy + Delta-G solvation = -3012.924567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.97289 -38.10888 -36.52345 -35.17068 -32.91035 -31.89864 -31.16876 -30.73703 -26.06206 -25.00926 -23.26208 -23.03661 -20.86472 -19.44841 -18.08097 -16.46893 -16.04253 -15.58613 -14.86562 -14.54436 -14.23680 -14.19572 -13.76293 -13.43317 -13.31249 -13.00937 -12.39849 -11.98930 -11.82184 -11.47918 -11.40537 -11.25019 -11.03692 -10.92258 -10.72291 -10.35856 -10.25560 -9.73842 -9.23709 -9.16877 -8.99866 -8.79943 -8.36674 -7.37107 -6.29789 -4.04602 1.11270 1.44006 2.08789 3.14497 3.23758 3.28786 3.59710 4.10838 4.45524 4.56210 4.84926 5.05817 5.12230 5.32904 5.39257 5.78834 5.81910 5.90085 5.97083 6.05704 6.16069 6.32156 6.50895 6.54598 6.68217 6.82493 6.87708 7.12758 7.42998 7.67896 7.99774 8.34888 8.54787 9.09155 9.40505 9.85292 10.69305 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.007150 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.591661 B = 3915.063121 C = 5217.009171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.405 5.405 5 C -0.297 4.297 6 H 0.115 0.885 7 C 0.039 3.961 8 N -0.873 5.873 9 Si 0.923 3.077 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.284 1.284 13 C 0.503 3.497 14 O -0.601 6.601 15 C 0.131 3.869 16 C -0.125 4.125 17 C -0.005 4.005 18 Cl -0.069 7.069 19 C -0.171 4.171 20 C 0.096 3.904 21 N -0.406 5.406 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.269 0.731 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 -4.309 -2.054 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.016 4.016 4 N -0.120 5.120 5 C -0.426 4.426 6 H 0.132 0.868 7 C -0.165 4.165 8 N -0.511 5.511 9 Si 0.750 3.250 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.291 3.709 14 O -0.487 6.487 15 C -0.008 4.008 16 C -0.147 4.147 17 C -0.039 4.039 18 Cl -0.040 7.040 19 C -0.193 4.193 20 C -0.063 4.063 21 N -0.117 5.117 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.155 0.845 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.245 -4.027 -1.809 7.648 hybrid contribution 1.197 0.117 -0.088 1.206 sum 7.442 -3.910 -1.897 8.618 Atomic orbital electron populations 1.21639 0.96380 1.00428 1.01513 1.21847 0.94957 0.99301 1.01201 1.21738 0.80938 0.94542 1.04372 1.43461 1.05123 1.58318 1.05081 1.20109 1.14648 1.14419 0.93472 0.86757 1.25608 0.96101 0.94859 0.99939 1.69690 1.25267 1.19451 1.36679 0.85912 0.79939 0.78450 0.80673 1.18792 1.20800 1.21022 1.18026 0.84725 0.83515 0.84637 1.90636 1.68440 1.58428 1.31205 1.21561 0.96023 0.95460 0.87730 1.22029 0.91925 0.99789 1.00957 1.21097 0.92241 1.02591 0.88017 1.98358 1.75031 1.94474 1.36123 1.22160 1.01545 1.03569 0.92018 1.23183 0.90516 0.94996 0.97596 1.68902 1.07500 1.08388 1.26950 0.93652 0.92834 0.93115 0.93100 0.92304 0.86328 0.92847 0.92075 0.83311 0.84468 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.13 -2.74 6.22 -26.73 -0.17 -2.91 16 3 C 0.11 2.55 4.88 -4.04 -0.02 2.53 16 4 N -0.41 -10.30 2.51 -115.83 -0.29 -10.59 16 5 C -0.30 -7.47 7.48 -15.02 -0.11 -7.58 16 6 H 0.12 2.82 5.96 -52.49 -0.31 2.51 16 7 C 0.04 0.99 5.35 -17.45 -0.09 0.89 16 8 N -0.87 -22.88 10.99 55.50 0.61 -22.27 16 9 Si 0.92 19.58 29.55 -169.99 -5.02 14.56 16 10 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.50 12.64 7.57 -12.25 -0.09 12.54 16 14 O -0.60 -15.97 15.98 5.30 0.08 -15.89 16 15 C 0.13 2.86 6.66 -83.02 -0.55 2.31 16 16 C -0.12 -2.34 9.45 -38.99 -0.37 -2.71 16 17 C -0.01 -0.08 6.37 -39.20 -0.25 -0.33 16 18 Cl -0.07 -0.92 29.02 -51.86 -1.50 -2.42 16 19 C -0.17 -2.43 9.94 -39.28 -0.39 -2.82 16 20 C 0.10 1.54 11.18 -17.58 -0.20 1.35 16 21 N -0.41 -8.38 6.36 -9.82 -0.06 -8.45 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.12 2.99 5.52 -51.93 -0.29 2.70 16 28 H 0.05 1.33 7.53 -51.93 -0.39 0.94 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.15 2.77 7.65 -52.49 -0.40 2.36 16 31 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -28.42 292.52 -7.14 -35.56 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.49 Total: 3.82 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.87 Total: 1.27 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.26 Total: -41.30 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.42 -7.14 -35.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127537688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.298 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds