Wall clock time and date at job start Mon Mar 30 2020 07:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46809 * 2 1 4 4 N 1.46500 * 109.46927 * 180.02562 * 3 2 1 5 5 C 1.36882 * 119.99796 * 262.73951 * 4 3 2 6 6 H 1.08002 * 119.99944 * 140.80146 * 5 4 3 7 7 C 1.39044 * 120.00340 * 320.80129 * 5 4 3 8 8 N 1.31373 * 119.99724 * 340.29959 * 7 5 4 9 9 Si 1.86800 * 120.00031 * 160.29377 * 7 5 4 10 10 H 1.48499 * 109.46861 * 90.00398 * 9 7 5 11 11 H 1.48500 * 109.46889 * 209.99888 * 9 7 5 12 12 H 1.48491 * 109.47352 * 330.00159 * 9 7 5 13 13 C 1.34776 * 120.00217 * 82.74052 * 4 3 2 14 14 O 1.21600 * 119.99430 * 8.68693 * 13 4 3 15 15 C 1.47647 * 119.99916 * 188.68521 * 13 4 3 16 16 C 1.40074 * 120.57511 * 325.38838 * 15 13 4 17 17 C 1.38331 * 118.29636 * 180.28327 * 16 15 13 18 18 C 1.38367 * 119.34697 * 359.44467 * 17 16 15 19 19 N 1.31927 * 121.12259 * 0.27887 * 18 17 16 20 20 C 1.31819 * 121.86182 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 119.73759 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47510 * 299.99667 * 1 2 3 24 24 H 1.09001 * 109.47134 * 59.99963 * 1 2 3 25 25 H 1.08997 * 109.47074 * 240.00283 * 2 1 3 26 26 H 1.09001 * 109.47134 * 120.00037 * 2 1 3 27 27 H 1.09002 * 109.46813 * 59.99905 * 3 2 1 28 28 H 1.09001 * 109.47302 * 299.99933 * 3 2 1 29 29 H 0.97001 * 119.99830 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.85616 * 0.02562 * 16 15 13 31 31 H 1.08002 * 120.32933 * 179.71262 * 17 16 15 32 32 H 1.08002 * 119.43878 * 180.24659 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1898 1.5922 1.1751 6 1 5.0876 1.0191 1.3537 7 6 3.7297 2.4820 2.1393 8 7 2.8986 3.4425 1.8036 9 14 4.2930 2.3117 3.9122 10 1 5.5264 3.1125 4.1187 11 1 3.2258 2.8035 4.8201 12 1 4.5747 0.8838 4.2071 13 6 4.1784 1.2953 -1.1587 14 8 3.5803 1.3209 -2.2172 15 6 5.6422 1.1028 -1.1422 16 6 6.4335 1.7388 -0.1771 17 6 7.8007 1.5302 -0.2089 18 6 8.3375 0.6988 -1.1760 19 7 7.5684 0.1074 -2.0701 20 6 6.2614 0.2777 -2.0853 21 17 5.3019 -0.5283 -3.2867 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6765 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 2.5779 4.0635 2.4762 30 1 5.9883 2.3790 0.5700 31 1 8.4423 2.0080 0.5166 32 1 9.4042 0.5317 -1.1998 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127547444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:31 Heat of formation + Delta-G solvation = -15.659200 kcal Electronic energy + Delta-G solvation = -18536.738677 eV Core-core repulsion = 15522.973028 eV Total energy + Delta-G solvation = -3013.765649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49867 -39.89722 -37.57508 -36.97481 -34.81694 -33.77773 -32.86066 -31.93557 -27.78266 -26.90444 -24.82728 -24.33566 -22.52060 -21.20803 -19.59066 -18.11382 -17.92236 -17.37919 -16.45282 -16.37149 -15.75132 -15.73574 -15.30490 -15.05046 -14.76514 -14.22754 -13.95169 -13.51816 -13.21395 -13.04093 -12.95543 -12.69260 -12.61914 -12.39004 -12.17130 -12.07670 -11.99283 -11.54442 -11.00814 -10.91329 -10.73877 -10.23377 -9.90921 -9.43957 -8.33740 -6.08749 -0.25813 0.18844 0.88640 1.43690 1.51680 1.61836 2.03442 2.28739 2.70364 2.82832 3.09161 3.62610 3.93703 4.04755 4.10302 4.17425 4.28294 4.39491 4.49980 4.63297 4.81295 4.93296 5.06816 5.16288 5.20135 5.22733 5.33399 5.40271 5.50893 5.61722 5.98485 6.37272 6.68585 7.05473 7.49937 7.94957 8.69263 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.009301 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.406353 B = 3009.545694 C = 4403.425479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.124 3.876 4 N -0.437 5.437 5 C -0.363 4.363 6 H 0.102 0.898 7 C 0.013 3.987 8 N -0.884 5.884 9 Si 0.976 3.024 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.497 3.503 14 O -0.610 6.610 15 C -0.159 4.159 16 C -0.035 4.035 17 C -0.169 4.169 18 C 0.125 3.875 19 N -0.506 5.506 20 C 0.186 3.814 21 Cl -0.031 7.031 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.033 0.967 29 H 0.275 0.725 30 H 0.168 0.832 31 H 0.187 0.813 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -3.674 2.414 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.001 3.999 4 N -0.154 5.154 5 C -0.490 4.490 6 H 0.119 0.881 7 C -0.192 4.192 8 N -0.520 5.520 9 Si 0.798 3.202 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.187 1.187 13 C 0.286 3.714 14 O -0.497 6.497 15 C -0.166 4.166 16 C -0.061 4.061 17 C -0.188 4.188 18 C -0.032 4.032 19 N -0.217 5.217 20 C 0.021 3.979 21 Cl -0.002 7.002 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.185 0.815 31 H 0.204 0.796 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.672 -4.099 1.269 7.933 hybrid contribution -0.683 0.580 1.021 1.359 sum 5.990 -3.519 2.291 7.315 Atomic orbital electron populations 1.21604 0.93447 1.02387 1.01855 1.21761 0.97455 0.96777 1.00521 1.21330 0.80897 0.96083 1.01580 1.43509 1.05295 1.61059 1.05498 1.19797 1.12361 1.23252 0.93607 0.88090 1.26169 0.96619 0.92776 1.03629 1.70037 1.32429 1.13543 1.35960 0.85198 0.78532 0.79256 0.77165 1.18459 1.20921 1.18734 1.18427 0.86824 0.81876 0.84263 1.90629 1.70210 1.57445 1.31388 1.20717 0.95712 1.01683 0.98444 1.22833 0.94046 0.94759 0.94489 1.22682 0.94662 1.00233 1.01248 1.23583 1.01122 0.90442 0.88055 1.67092 1.03252 1.24845 1.26549 1.21738 0.90148 0.94634 0.91339 1.98377 1.68955 1.77973 1.54902 0.90960 0.92242 0.92984 0.94330 0.92394 0.89273 0.94846 0.91481 0.81465 0.79619 0.77236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.91 71.98 0.71 -3.63 16 2 C -0.13 -5.14 6.20 30.60 0.19 -4.95 16 3 C 0.12 5.95 4.91 86.38 0.42 6.37 16 4 N -0.44 -21.82 2.52 -639.01 -1.61 -23.43 16 5 C -0.36 -17.08 6.43 84.10 0.54 -16.54 16 6 H 0.10 4.49 5.84 -2.91 -0.02 4.48 16 7 C 0.01 0.59 4.91 84.95 0.42 1.01 16 8 N -0.88 -43.99 11.59 21.68 0.25 -43.74 16 9 Si 0.98 35.57 29.60 68.60 2.03 37.60 16 10 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 11 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 12 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 13 C 0.50 25.15 7.06 86.73 0.61 25.77 16 14 O -0.61 -33.51 14.72 -4.03 -0.06 -33.57 16 15 C -0.16 -6.94 5.54 -19.98 -0.11 -7.05 16 16 C -0.04 -1.28 7.79 22.74 0.18 -1.11 16 17 C -0.17 -4.37 10.09 22.32 0.23 -4.14 16 18 C 0.12 3.19 11.17 84.71 0.95 4.13 16 19 N -0.51 -17.51 10.33 -185.53 -1.92 -19.43 16 20 C 0.19 7.60 7.30 85.07 0.62 8.22 16 21 Cl -0.03 -1.26 26.83 -2.72 -0.07 -1.34 16 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.09 4.42 5.70 -2.39 -0.01 4.41 16 28 H 0.03 1.71 7.54 -2.39 -0.02 1.69 16 29 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 30 H 0.17 6.53 5.49 -2.91 -0.02 6.51 16 31 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.21 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -62.37 287.92 4.52 -57.85 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.14 Total: 17.98 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 4.76 Total: 8.08 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -3.28 Total: -86.61 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.06 Total: -33.57 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.34 kcal Total: -62.37 4.52 -57.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127547444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.188 kcal (2) G-P(sol) polarization free energy of solvation -62.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds