Wall clock time and date at job start Mon Mar 30 2020 08:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35966 * 116.99830 * 2 1 4 4 C 1.38660 * 119.99287 * 0.02562 * 3 2 1 5 5 C 1.38379 * 120.29876 * 179.97438 * 4 3 2 6 6 C 1.37874 * 120.27875 * 0.02562 * 5 4 3 7 7 C 1.39733 * 119.96927 * 0.02562 * 6 5 4 8 8 C 1.47582 * 120.14367 * 179.97438 * 7 6 5 9 9 O 1.21484 * 120.00016 * 179.97438 * 8 7 6 10 10 O 1.34730 * 120.00106 * 359.97438 * 8 7 6 11 11 C 1.45194 * 117.00038 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47510 * 330.00884 * 11 10 8 13 13 C 1.53006 * 109.46979 * 90.00641 * 11 10 8 14 14 C 1.50699 * 109.47218 * 210.00299 * 11 10 8 15 15 H 1.07999 * 120.00019 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99908 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00364 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99946 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47247 * 89.99769 * 18 16 14 20 20 H 1.48496 * 109.47178 * 209.99766 * 18 16 14 21 21 H 1.48504 * 109.47095 * 329.99574 * 18 16 14 22 22 C 1.38764 * 119.98847 * 180.27795 * 3 2 1 23 23 F 1.35097 * 120.14001 * 0.02618 * 22 3 2 24 24 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46531 * 299.99602 * 1 2 3 26 26 H 1.09001 * 109.47531 * 59.99608 * 1 2 3 27 27 H 1.07998 * 119.85252 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.86844 * 179.97438 * 5 4 3 29 29 H 1.07992 * 120.01440 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.47002 * 299.99655 * 13 11 10 31 31 H 1.08993 * 109.46955 * 60.00092 * 13 11 10 32 32 H 1.09000 * 109.47050 * 179.97438 * 13 11 10 33 33 H 0.96999 * 120.00396 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2909 2.3743 0.0005 5 6 1.9125 3.6106 0.0011 6 6 3.2885 3.6968 0.0005 7 6 4.0609 2.5324 -0.0011 8 6 5.5341 2.6202 -0.0022 9 8 6.2030 1.6061 -0.0032 10 8 6.1371 3.8250 -0.0022 11 6 7.5890 3.8354 -0.0039 12 1 7.9594 2.9477 0.5088 13 6 8.0973 3.8401 -1.4471 14 6 8.0834 5.0690 0.7067 15 1 7.3770 5.7744 1.1188 16 6 9.4375 5.2971 0.8307 17 7 10.2977 4.4379 0.3293 18 14 10.0503 6.8258 1.7122 19 1 10.2199 6.5294 3.1574 20 1 11.3545 7.2403 1.1356 21 1 9.0638 7.9230 1.5442 22 6 3.4320 1.2839 -0.0058 23 9 4.1703 0.1525 -0.0120 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2125 2.3148 0.0005 28 1 1.3173 4.5118 0.0011 29 1 3.7692 4.6639 0.0014 30 1 7.7397 2.9479 -1.9611 31 1 7.7269 4.7278 -1.9598 32 1 9.1872 3.8484 -1.4484 33 1 11.2504 4.5982 0.4169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156757386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:12 Heat of formation + Delta-G solvation = -162.788975 kcal Electronic energy + Delta-G solvation = -20042.784718 eV Core-core repulsion = 16562.009917 eV Total energy + Delta-G solvation = -3480.774801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.98244 -41.52680 -40.81561 -38.44964 -37.56683 -35.35799 -32.49744 -31.59816 -31.20113 -28.25378 -27.48881 -25.76138 -23.66890 -23.22032 -21.63888 -19.78596 -18.76810 -18.51769 -18.09544 -17.60501 -17.40403 -17.20028 -16.72611 -16.36089 -16.06275 -15.69684 -15.55614 -14.96081 -14.37719 -14.10635 -13.89687 -13.46947 -13.40479 -13.19872 -13.01643 -12.84651 -12.77458 -12.40666 -12.31177 -12.14800 -12.11751 -11.66086 -11.51480 -11.02842 -10.62328 -10.17220 -9.36914 -8.29479 -6.47325 -0.59929 0.09470 1.41605 1.44646 1.45751 1.55609 1.65591 2.24477 2.43046 2.50030 3.01489 3.04264 3.51763 3.73756 3.85629 4.08668 4.27080 4.39317 4.44807 4.49019 4.70677 4.74839 4.77464 4.78155 4.92044 5.07475 5.10784 5.20405 5.44873 5.47711 5.56922 5.84421 5.99845 6.21354 6.56249 6.82019 7.23849 8.78839 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038268 B = 0.004312 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.511556 B = 6491.940051 C = 6932.872757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.129 4.129 5 C -0.080 4.080 6 C -0.071 4.071 7 C -0.143 4.143 8 C 0.488 3.512 9 O -0.545 6.545 10 O -0.346 6.346 11 C 0.216 3.784 12 H 0.004 0.996 13 C -0.142 4.142 14 C -0.547 4.547 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.988 3.012 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.258 1.258 22 C 0.087 3.913 23 F -0.138 7.138 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.192 0.808 28 H 0.191 0.809 29 H 0.155 0.845 30 H 0.018 0.982 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.710 -0.712 -0.973 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.250 6.250 3 C 0.036 3.964 4 C -0.148 4.148 5 C -0.097 4.097 6 C -0.089 4.089 7 C -0.145 4.145 8 C 0.334 3.666 9 O -0.438 6.438 10 O -0.262 6.262 11 C 0.163 3.837 12 H 0.022 0.978 13 C -0.200 4.200 14 C -0.585 4.585 15 H 0.092 0.908 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.811 3.189 19 H -0.199 1.199 20 H -0.201 1.201 21 H -0.182 1.182 22 C 0.066 3.934 23 F -0.117 7.117 24 H 0.135 0.865 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.209 0.791 28 H 0.208 0.792 29 H 0.173 0.827 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.173 -1.261 -1.007 23.229 hybrid contribution 1.266 -0.231 0.285 1.318 sum -21.908 -1.493 -0.721 21.970 Atomic orbital electron populations 1.23559 0.74837 1.06225 1.03448 1.86148 1.24810 1.25267 1.88760 1.18830 0.88799 0.87730 1.01082 1.21913 1.02515 0.89751 1.00578 1.21527 0.92645 0.99387 0.96181 1.21624 0.94999 0.96748 0.95556 1.19162 0.89150 0.94405 1.11792 1.21573 0.89921 0.82347 0.72729 1.90803 1.67610 1.37874 1.47488 1.86502 1.27011 1.30448 1.82260 1.20458 0.70587 0.97503 0.95158 0.97815 1.21996 1.03801 0.98279 0.95927 1.21287 0.92764 1.06753 1.37650 0.90810 1.25910 0.95954 1.00769 0.95908 1.70032 1.02895 1.37548 1.45237 0.85102 0.77836 0.77897 0.78082 1.19851 1.20101 1.18156 1.17383 0.87684 0.81291 1.07013 1.91500 1.77343 1.49138 1.93690 0.86450 0.90272 0.90233 0.79093 0.79156 0.82685 0.96271 0.92956 0.89842 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -7.72 10.36 -93.17 -0.97 -8.68 16 3 C 0.08 2.05 6.69 22.50 0.15 2.20 16 4 C -0.13 -1.94 9.03 22.40 0.20 -1.74 16 5 C -0.08 -1.24 10.02 22.22 0.22 -1.01 16 6 C -0.07 -1.84 9.61 22.54 0.22 -1.63 16 7 C -0.14 -5.25 5.88 -20.07 -0.12 -5.37 16 8 C 0.49 23.60 7.87 70.29 0.55 24.16 16 9 O -0.55 -30.48 14.60 19.89 0.29 -30.19 16 10 O -0.35 -17.55 9.11 -56.40 -0.51 -18.07 16 11 C 0.22 12.42 2.56 29.85 0.08 12.50 16 12 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 13 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 14 C -0.55 -31.50 8.90 25.60 0.23 -31.27 16 15 H 0.07 4.08 7.81 -2.91 -0.02 4.05 16 16 C 0.01 0.79 5.30 84.66 0.45 1.24 16 17 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 18 Si 0.99 42.99 29.54 68.60 2.03 45.01 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 C 0.09 3.07 7.30 22.77 0.17 3.24 16 23 F -0.14 -5.95 15.39 44.97 0.69 -5.25 16 24 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.44 7.66 -2.39 -0.02 0.42 16 26 H 0.08 0.43 7.66 -2.39 -0.02 0.41 16 27 H 0.19 0.98 6.27 -2.91 -0.02 0.96 16 28 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 29 H 0.16 3.93 7.61 -2.91 -0.02 3.91 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 2.59 8.14 -2.39 -0.02 2.58 16 32 H 0.08 4.77 6.07 -2.39 -0.01 4.76 16 33 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -78.60 294.96 6.84 -71.76 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.14 Total: 2.56 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 3.93 Total: -3.46 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.24 Total: -53.69 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.19 Total: -56.94 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.69 Total: -5.25 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -78.60 6.84 -71.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156757386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.032 kcal (2) G-P(sol) polarization free energy of solvation -78.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds