Wall clock time and date at job start Mon Mar 30 2020 08:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35964 * 117.00281 * 2 1 4 4 C 1.38660 * 119.98661 * 359.97397 * 3 2 1 5 5 C 1.38392 * 120.29588 * 180.02562 * 4 3 2 6 6 C 1.37873 * 120.27345 * 359.70414 * 5 4 3 7 7 C 1.39732 * 119.97165 * 0.57165 * 6 5 4 8 8 C 1.47584 * 120.14071 * 179.72259 * 7 6 5 9 9 O 1.21494 * 119.99600 * 179.72461 * 8 7 6 10 10 O 1.34730 * 120.00111 * 359.72603 * 8 7 6 11 11 C 1.45202 * 116.99814 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46971 * 30.00444 * 11 10 8 13 13 C 1.52996 * 109.47175 * 270.00257 * 11 10 8 14 14 C 1.50698 * 109.46697 * 149.99828 * 11 10 8 15 15 H 1.08003 * 120.00248 * 35.00756 * 14 11 10 16 16 C 1.37879 * 120.00061 * 214.99746 * 14 11 10 17 17 N 1.31514 * 120.00065 * 184.92370 * 16 14 11 18 18 Si 1.86799 * 120.00086 * 4.91820 * 16 14 11 19 19 H 1.48496 * 109.46932 * 84.83083 * 18 16 14 20 20 H 1.48491 * 109.47212 * 204.83377 * 18 16 14 21 21 H 1.48507 * 109.46996 * 324.83552 * 18 16 14 22 22 C 1.38766 * 119.99236 * 179.97438 * 3 2 1 23 23 F 1.35092 * 120.13549 * 0.02562 * 22 3 2 24 24 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47271 * 299.99920 * 1 2 3 26 26 H 1.09001 * 109.47305 * 60.00316 * 1 2 3 27 27 H 1.08003 * 119.85449 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.86276 * 179.97438 * 5 4 3 29 29 H 1.07993 * 120.00875 * 180.27903 * 6 5 4 30 30 H 1.08992 * 109.47218 * 295.03411 * 13 11 10 31 31 H 1.09005 * 109.46733 * 175.03555 * 13 11 10 32 32 H 1.09000 * 109.47120 * 55.03506 * 13 11 10 33 33 H 0.96997 * 119.99915 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2909 2.3742 -0.0005 5 6 1.9126 3.6106 -0.0011 6 6 3.2886 3.6967 0.0051 7 6 4.0609 2.5322 -0.0002 8 6 5.5342 2.6201 0.0002 9 8 6.2031 1.6059 0.0006 10 8 6.1372 3.8249 0.0000 11 6 7.5892 3.8353 0.0010 12 1 7.9592 2.9477 -0.5123 13 6 8.0982 3.8395 1.4438 14 6 8.0831 5.0690 -0.7097 15 1 7.5340 5.9955 -0.6281 16 6 9.2359 5.0150 -1.4640 17 7 9.7200 6.1119 -2.0045 18 14 10.1104 3.3840 -1.7180 19 1 9.4939 2.6648 -2.8616 20 1 11.5462 3.6316 -2.0050 21 1 9.9862 2.5591 -0.4894 22 6 3.4321 1.2838 0.0005 23 9 4.1703 0.1524 0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2125 2.3147 -0.0006 28 1 1.3174 4.5118 -0.0019 29 1 3.7693 4.6638 0.0092 30 1 7.8024 4.7687 1.9307 31 1 9.1852 3.7584 1.4458 32 1 7.6697 2.9945 1.9827 33 1 10.5313 6.0740 -2.5349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156757543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:09:14 Heat of formation + Delta-G solvation = -162.768728 kcal Electronic energy + Delta-G solvation = -20140.949070 eV Core-core repulsion = 16660.175147 eV Total energy + Delta-G solvation = -3480.773923 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98516 -41.56263 -40.83731 -38.46667 -37.59281 -35.21184 -32.91108 -31.94614 -31.33420 -28.26064 -27.49927 -25.76712 -23.66040 -23.07224 -21.60722 -19.98133 -19.07859 -18.57892 -18.18332 -17.60709 -17.43522 -17.31282 -16.76601 -16.24025 -16.06015 -15.69748 -15.56395 -14.93173 -14.61552 -14.44986 -13.97875 -13.76486 -13.47398 -13.31850 -13.07279 -12.95371 -12.78887 -12.63139 -12.32588 -12.12830 -11.99625 -11.59834 -11.45780 -11.22492 -10.90951 -10.17915 -9.37324 -8.49708 -6.58907 -0.61085 0.08950 1.21907 1.27249 1.37250 1.41939 1.58170 2.17324 2.24847 2.49035 2.87874 3.03253 3.49273 3.73086 3.83785 4.07408 4.18166 4.25007 4.38961 4.44274 4.54487 4.58464 4.70287 4.77271 4.82291 4.93552 5.09353 5.19437 5.27304 5.33623 5.44995 5.53067 6.09557 6.20585 6.49359 6.75701 7.08353 8.65200 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.004817 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.888344 B = 5810.873781 C = 6199.968737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.335 6.335 3 C 0.081 3.919 4 C -0.129 4.129 5 C -0.081 4.081 6 C -0.072 4.072 7 C -0.144 4.144 8 C 0.490 3.510 9 O -0.543 6.543 10 O -0.344 6.344 11 C 0.181 3.819 12 H 0.033 0.967 13 C -0.147 4.147 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.041 3.959 17 N -0.918 5.918 18 Si 0.922 3.078 19 H -0.273 1.273 20 H -0.262 1.262 21 H -0.254 1.254 22 C 0.089 3.911 23 F -0.136 7.136 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.191 0.809 28 H 0.189 0.811 29 H 0.154 0.846 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.449 -7.527 4.886 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.249 6.249 3 C 0.035 3.965 4 C -0.148 4.148 5 C -0.099 4.099 6 C -0.090 4.090 7 C -0.147 4.147 8 C 0.336 3.664 9 O -0.436 6.436 10 O -0.260 6.260 11 C 0.127 3.873 12 H 0.051 0.949 13 C -0.205 4.205 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.161 4.161 17 N -0.555 5.555 18 Si 0.745 3.255 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.179 1.179 22 C 0.069 3.931 23 F -0.115 7.115 24 H 0.136 0.864 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.208 0.792 28 H 0.206 0.794 29 H 0.171 0.829 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.946 -7.941 4.779 23.823 hybrid contribution 1.190 -0.844 -0.383 1.509 sum -20.756 -8.786 4.396 22.963 Atomic orbital electron populations 1.23553 0.74874 1.06223 1.03418 1.86144 1.24767 1.25238 1.88758 1.18832 0.88910 0.87661 1.01084 1.21907 1.02508 0.89786 1.00568 1.21517 0.92736 0.99373 0.96272 1.21618 0.95013 0.96842 0.95535 1.19162 0.89418 0.94254 1.11818 1.21551 0.89839 0.82391 0.72611 1.90791 1.67427 1.37659 1.47702 1.86659 1.26619 1.30562 1.82167 1.20920 0.73321 0.96955 0.96056 0.94871 1.22146 1.01326 1.01180 0.95806 1.20875 1.09336 0.95006 1.31350 0.92565 1.25555 0.97331 0.99634 0.93547 1.69930 1.22786 1.29154 1.33667 0.86128 0.78983 0.80405 0.80011 1.19794 1.18679 1.17851 1.17334 0.87597 0.81300 1.06896 1.91500 1.77263 1.49027 1.93672 0.86423 0.90231 0.90371 0.79199 0.79397 0.82880 0.91325 0.91471 0.93854 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -7.42 10.36 -93.15 -0.96 -8.38 16 3 C 0.08 1.97 6.69 22.50 0.15 2.12 16 4 C -0.13 -1.91 9.03 22.41 0.20 -1.71 16 5 C -0.08 -1.27 10.02 22.22 0.22 -1.04 16 6 C -0.07 -1.84 9.61 22.54 0.22 -1.63 16 7 C -0.14 -5.09 5.88 -20.08 -0.12 -5.21 16 8 C 0.49 22.22 7.87 70.29 0.55 22.78 16 9 O -0.54 -27.87 14.60 19.85 0.29 -27.58 16 10 O -0.34 -16.55 9.11 -56.40 -0.51 -17.07 16 11 C 0.18 9.41 2.23 29.85 0.07 9.48 16 12 H 0.03 1.83 4.31 -2.39 -0.01 1.82 16 13 C -0.15 -6.65 9.53 71.98 0.69 -5.96 16 14 C -0.53 -30.80 9.25 25.60 0.24 -30.56 16 15 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 16 C 0.04 2.38 5.47 84.66 0.46 2.84 16 17 N -0.92 -55.38 13.96 21.45 0.30 -55.08 16 18 Si 0.92 45.15 26.99 68.60 1.85 47.00 16 19 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.25 -12.16 6.82 99.48 0.68 -11.48 16 22 C 0.09 3.02 7.30 22.77 0.17 3.19 16 23 F -0.14 -5.55 15.39 44.97 0.69 -4.86 16 24 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.08 0.40 7.66 -2.39 -0.02 0.38 16 26 H 0.08 0.42 7.66 -2.39 -0.02 0.40 16 27 H 0.19 0.97 6.27 -2.91 -0.02 0.95 16 28 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.15 3.93 7.61 -2.91 -0.02 3.90 16 30 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -77.43 294.61 6.72 -70.71 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: 1.11 Total: -0.26 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 3.96 Total: -4.48 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.30 Total: -55.08 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.19 Total: -53.03 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.69 Total: -4.86 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.85 Total: 47.00 kcal Total: -77.43 6.72 -70.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156757543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.061 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds