Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35606 * 116.99880 * 2 1 4 4 C 1.38643 * 120.16387 * 359.96992 * 3 2 1 5 5 C 1.38102 * 120.15394 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.47543 * 0.02850 * 5 4 3 7 7 C 1.37868 * 120.32457 * 359.71848 * 6 5 4 8 8 Cl 1.73597 * 120.07909 * 180.27936 * 7 6 5 9 9 C 1.40157 * 119.83782 * 0.52809 * 7 6 5 10 10 C 1.46697 * 120.22957 * 179.74451 * 9 7 6 11 11 O 1.21310 * 119.99873 * 264.17963 * 10 9 7 12 12 C 1.50697 * 120.00099 * 84.45889 * 10 9 7 13 13 H 1.08999 * 109.46937 * 327.67707 * 12 10 9 14 14 C 1.53003 * 109.47306 * 87.67608 * 12 10 9 15 15 C 1.50701 * 109.47304 * 207.67469 * 12 10 9 16 16 H 1.08000 * 120.00065 * 0.02562 * 15 12 10 17 17 C 1.37880 * 120.00047 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00187 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99805 * 179.97438 * 17 15 12 20 20 H 1.48492 * 109.47139 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46774 * 120.00623 * 19 17 15 22 22 H 1.48493 * 109.47266 * 240.00086 * 19 17 15 23 23 H 1.09001 * 109.46654 * 60.00718 * 1 2 3 24 24 H 1.08996 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47274 * 300.00608 * 1 2 3 26 26 H 1.08003 * 119.92118 * 0.02625 * 4 3 2 27 27 H 1.07992 * 119.76144 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.83328 * 180.02562 * 6 5 4 29 29 H 1.08995 * 109.47288 * 180.02562 * 14 12 10 30 30 H 1.09000 * 109.46907 * 299.99754 * 14 12 10 31 31 H 1.08999 * 109.47042 * 60.00163 * 14 12 10 32 32 H 0.96997 * 120.00194 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2928 2.3732 -0.0006 5 6 1.9200 3.6036 -0.0001 6 6 3.3029 3.6874 0.0005 7 6 4.0697 2.5416 0.0064 8 17 5.8020 2.6540 0.0144 9 6 3.4472 1.2859 0.0006 10 6 4.2548 0.0612 0.0011 11 8 4.5043 -0.5013 -1.0443 12 6 4.7691 -0.5017 1.3010 13 1 4.9690 0.3137 1.9962 14 6 3.7193 -1.4385 1.9021 15 6 6.0410 -1.2692 1.0478 16 1 6.4376 -1.3418 0.0458 17 6 6.6991 -1.8779 2.0954 18 7 6.2166 -1.7891 3.3156 19 14 8.2754 -2.8299 1.7814 20 1 8.6038 -2.7798 0.3341 21 1 9.3838 -2.2230 2.5614 22 1 8.0918 -4.2429 2.1992 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2142 2.3182 -0.0007 27 1 1.3282 4.5069 -0.0010 28 1 3.7826 4.6550 0.0013 29 1 4.0911 -1.8452 2.8425 30 1 2.7993 -0.8833 2.0853 31 1 3.5194 -2.2539 1.2069 32 1 6.6793 -2.2176 4.0526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162039921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = -77.690202 kcal Electronic energy + Delta-G solvation = -18385.119439 eV Core-core repulsion = 15336.371173 eV Total energy + Delta-G solvation = -3048.748266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.53650 -39.85622 -38.57546 -37.27196 -35.81008 -33.02493 -31.87451 -31.10321 -28.25728 -27.29568 -25.91708 -23.56134 -23.15423 -20.77372 -19.08304 -18.43099 -17.66248 -17.34770 -16.98312 -16.62132 -16.18261 -15.70337 -15.37751 -15.26260 -14.57223 -14.41565 -14.26666 -13.54010 -13.34162 -13.06549 -12.82807 -12.79715 -12.69889 -12.64879 -12.30378 -12.25256 -12.13934 -11.95764 -11.83224 -11.07473 -10.57683 -10.29491 -9.84924 -9.31406 -8.15584 -6.28154 -0.06415 0.22831 0.99250 1.12342 1.36949 1.38232 1.51886 2.32336 2.39951 2.49792 3.11426 3.24069 3.85343 4.01189 4.13191 4.30557 4.35408 4.42123 4.44321 4.64011 4.73610 4.75455 4.97333 4.99079 5.09893 5.16079 5.25744 5.46387 5.56109 5.66304 5.90021 6.17395 6.33041 6.71205 6.79913 7.38461 8.90215 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.007308 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.680424 B = 3830.473894 C = 4674.593667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.339 6.339 3 C 0.154 3.846 4 C -0.197 4.197 5 C -0.043 4.043 6 C -0.147 4.147 7 C 0.006 3.994 8 Cl -0.067 7.067 9 C -0.212 4.212 10 C 0.429 3.571 11 O -0.492 6.492 12 C 0.010 3.990 13 H 0.033 0.967 14 C -0.107 4.107 15 C -0.526 4.526 16 H 0.043 0.957 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.953 3.047 20 H -0.278 1.278 21 H -0.271 1.271 22 H -0.272 1.272 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.178 0.822 27 H 0.188 0.812 28 H 0.166 0.834 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.020 0.980 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 12.387 -3.755 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.107 3.893 4 C -0.215 4.215 5 C -0.060 4.060 6 C -0.166 4.166 7 C -0.021 4.021 8 Cl -0.038 7.038 9 C -0.215 4.215 10 C 0.307 3.693 11 O -0.367 6.367 12 C -0.009 4.009 13 H 0.051 0.949 14 C -0.165 4.165 15 C -0.564 4.564 16 H 0.061 0.939 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.778 3.222 20 H -0.203 1.203 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.097 0.903 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.195 0.805 27 H 0.206 0.794 28 H 0.183 0.817 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.459 11.833 -4.122 18.389 hybrid contribution 1.178 -0.771 0.007 1.408 sum -12.282 11.061 -4.116 17.033 Atomic orbital electron populations 1.23503 0.75205 1.05853 1.03305 1.86101 1.24631 1.26755 1.87725 1.18983 0.89259 0.86474 0.94562 1.21699 1.02042 0.90664 1.07104 1.21544 0.92885 0.98719 0.92893 1.21285 0.94591 0.96791 1.03936 1.20929 0.85073 0.93492 1.02628 1.98400 1.10491 1.98307 1.96619 1.19962 0.93562 0.95007 1.12923 1.22999 0.73482 0.81542 0.91325 1.90359 1.50700 1.59176 1.36488 1.19067 0.95208 0.95969 0.90657 0.94930 1.21380 0.95674 0.97813 1.01601 1.21192 1.07776 1.33480 0.93973 0.93896 1.25603 1.00547 0.96887 0.94729 1.69964 1.40422 1.44891 0.99615 0.85578 0.79749 0.78803 0.78036 1.20291 1.19672 1.19717 0.90327 0.87035 0.90223 0.80516 0.79441 0.81695 0.90747 0.94314 0.96118 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -11.18 9.64 -89.17 -0.86 -12.04 16 3 C 0.15 5.05 6.71 22.91 0.15 5.20 16 4 C -0.20 -4.16 9.03 22.33 0.20 -3.96 16 5 C -0.04 -0.76 10.03 22.31 0.22 -0.54 16 6 C -0.15 -3.55 9.80 22.26 0.22 -3.33 16 7 C 0.01 0.20 6.36 22.65 0.14 0.35 16 8 Cl -0.07 -2.58 28.05 -2.72 -0.08 -2.65 16 9 C -0.21 -8.68 5.55 -20.06 -0.11 -8.79 16 10 C 0.43 21.90 4.23 27.90 0.12 22.02 16 11 O -0.49 -28.08 16.66 -3.12 -0.05 -28.13 16 12 C 0.01 0.55 2.55 -12.29 -0.03 0.52 16 13 H 0.03 1.89 8.12 -2.39 -0.02 1.87 16 14 C -0.11 -5.55 8.95 71.98 0.64 -4.90 16 15 C -0.53 -31.95 8.33 25.60 0.21 -31.74 16 16 H 0.04 2.75 7.09 -2.91 -0.02 2.73 16 17 C 0.02 1.26 5.30 84.66 0.45 1.71 16 18 N -0.91 -53.25 11.32 21.45 0.24 -53.00 16 19 Si 0.95 46.26 29.54 68.60 2.03 48.28 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 24 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 26 H 0.18 2.19 6.29 -2.91 -0.02 2.17 16 27 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 29 H 0.07 4.11 6.07 -2.39 -0.01 4.10 16 30 H 0.04 1.76 7.83 -2.39 -0.02 1.74 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.47 294.62 5.75 -70.72 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: 1.14 Total: -1.11 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 3.34 Total: -22.07 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.91 Total: -40.17 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.65 kcal Total: -76.47 5.75 -70.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162039921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.968 kcal (2) G-P(sol) polarization free energy of solvation -76.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds